Merge pull request #904 from zidoshare/main

Fix: incorrect command formatting in agent context file, refix #895

AGENTS.md

@@ -42,7 +42,7 @@ Specify supports multiple AI agents by generating agent-specific command files a
 | **Kilo Code** | `.kilocode/rules/` | Markdown | N/A (IDE-based) | Kilo Code IDE |
 | **Auggie CLI** | `.augment/rules/` | Markdown | `auggie` | Auggie CLI |
 | **Roo Code** | `.roo/rules/` | Markdown | N/A (IDE-based) | Roo Code IDE |
-| **CodeBuddy** | `.codebuddy/commands/` | Markdown | `codebuddy` | CodeBuddy |
+| **CodeBuddy CLI** | `.codebuddy/commands/` | Markdown | `codebuddy` | CodeBuddy CLI |
 | **Amazon Q Developer CLI** | `.amazonq/prompts/` | Markdown | `q` | Amazon Q Developer CLI |
 
 ### Step-by-Step Integration Guide
@@ -249,7 +249,7 @@ Require a command-line tool to be installed:
 - **Cursor**: `cursor-agent` CLI
 - **Qwen Code**: `qwen` CLI
 - **opencode**: `opencode` CLI
-- **CodeBuddy**: `codebuddy` CLI
+- **CodeBuddy CLI**: `codebuddy` CLI
 
 ### IDE-Based Agents
 Work within integrated development environments:

README.md

@@ -20,16 +20,16 @@
 ## Table of Contents
 
 - [🤔 What is Spec-Driven Development?](#-what-is-spec-driven-development)
-- [⚡ Get started](#-get-started)
+- [⚡ Get Started](#-get-started)
 - [📽️ Video Overview](#️-video-overview)
 - [🤖 Supported AI Agents](#-supported-ai-agents)
 - [🔧 Specify CLI Reference](#-specify-cli-reference)
-- [📚 Core philosophy](#-core-philosophy)
-- [🌟 Development phases](#-development-phases)
-- [🎯 Experimental goals](#-experimental-goals)
+- [📚 Core Philosophy](#-core-philosophy)
+- [🌟 Development Phases](#-development-phases)
+- [🎯 Experimental Goals](#-experimental-goals)
 - [🔧 Prerequisites](#-prerequisites)
-- [📖 Learn more](#-learn-more)
-- [📋 Detailed process](#-detailed-process)
+- [📖 Learn More](#-learn-more)
+- [📋 Detailed Process](#-detailed-process)
 - [🔍 Troubleshooting](#-troubleshooting)
 - [👥 Maintainers](#-maintainers)
 - [💬 Support](#-support)
@@ -40,7 +40,7 @@
 
 Spec-Driven Development **flips the script** on traditional software development. For decades, code has been king — specifications were just scaffolding we built and discarded once the "real work" of coding began. Spec-Driven Development changes this: **specifications become executable**, directly generating working implementations rather than just guiding them.
 
-## ⚡ Get started
+## ⚡ Get Started
 
 ### 1. Install Specify CLI
 
@@ -84,6 +84,8 @@ uvx --from git+https://github.com/github/spec-kit.git specify init <PROJECT_NAME
 
 ### 2. Establish project principles
 
+Launch your AI assistant in the project directory. The `/speckit.*` commands are available in the assistant.
+
 Use the **`/speckit.constitution`** command to create your project's governing principles and development guidelines that will guide all subsequent development.
 
 ```bash
@@ -143,7 +145,7 @@ Want to see Spec Kit in action? Watch our [video overview](https://www.youtube.c
 | [Windsurf](https://windsurf.com/)                         | ✅ |                                                   |
 | [Kilo Code](https://github.com/Kilo-Org/kilocode)         | ✅ |                                                   |
 | [Auggie CLI](https://docs.augmentcode.com/cli/overview)   | ✅ |                                                   |
-| [CodeBuddy](https://www.codebuddy.ai/)                    | ✅ |                                                   |
+| [CodeBuddy CLI](https://www.codebuddy.ai/cli)             | ✅ |                                                   |
 | [Roo Code](https://roocode.com/)                          | ✅ |                                                   |
 | [Codex CLI](https://github.com/openai/codex)              | ✅ |                                                   |
 | [Amazon Q Developer CLI](https://aws.amazon.com/developer/learning/q-developer-cli/) | ⚠️ | Amazon Q Developer CLI [does not support](https://github.com/aws/amazon-q-developer-cli/issues/3064) custom arguments for slash commands. |
@@ -247,7 +249,7 @@ Additional commands for enhanced quality and validation:
 |------------------|------------------------------------------------------------------------------------------------|
 | `SPECIFY_FEATURE` | Override feature detection for non-Git repositories. Set to the feature directory name (e.g., `001-photo-albums`) to work on a specific feature when not using Git branches.<br/>**Must be set in the context of the agent you're working with prior to using `/speckit.plan` or follow-up commands. |
 
-## 📚 Core philosophy
+## 📚 Core Philosophy
 
 Spec-Driven Development is a structured process that emphasizes:
 
@@ -256,7 +258,7 @@ Spec-Driven Development is a structured process that emphasizes:
 - **Multi-step refinement** rather than one-shot code generation from prompts
 - **Heavy reliance** on advanced AI model capabilities for specification interpretation
 
-## 🌟 Development phases
+## 🌟 Development Phases
 
 | Phase | Focus | Key Activities |
 |-------|-------|----------------|
@@ -264,7 +266,7 @@ Spec-Driven Development is a structured process that emphasizes:
 | **Creative Exploration** | Parallel implementations | <ul><li>Explore diverse solutions</li><li>Support multiple technology stacks & architectures</li><li>Experiment with UX patterns</li></ul> |
 | **Iterative Enhancement** ("Brownfield") | Brownfield modernization | <ul><li>Add features iteratively</li><li>Modernize legacy systems</li><li>Adapt processes</li></ul> |
 
-## 🎯 Experimental goals
+## 🎯 Experimental Goals
 
 Our research and experimentation focus on:
 
@@ -300,14 +302,14 @@ Our research and experimentation focus on:
 
 If you encounter issues with an agent, please open an issue so we can refine the integration.
 
-## 📖 Learn more
+## 📖 Learn More
 
 - **[Complete Spec-Driven Development Methodology](./spec-driven.md)** - Deep dive into the full process
 - **[Detailed Walkthrough](#-detailed-process)** - Step-by-step implementation guide
 
 ---
 
-## 📋 Detailed process
+## 📋 Detailed Process
 
 <details>
 <summary>Click to expand the detailed step-by-step walkthrough</summary>

docs/installation.md

@@ -3,7 +3,7 @@
 ## Prerequisites
 
 - **Linux/macOS** (or Windows; PowerShell scripts now supported without WSL)
-- AI coding agent: [Claude Code](https://www.anthropic.com/claude-code), [GitHub Copilot](https://code.visualstudio.com/), or [Gemini CLI](https://github.com/google-gemini/gemini-cli)
+- AI coding agent: [Claude Code](https://www.anthropic.com/claude-code), [GitHub Copilot](https://code.visualstudio.com/), [Codebuddy CLI](https://www.codebuddy.ai/cli) or [Gemini CLI](https://github.com/google-gemini/gemini-cli)
 - [uv](https://docs.astral.sh/uv/) for package management
 - [Python 3.11+](https://www.python.org/downloads/)
 - [Git](https://git-scm.com/downloads)
@@ -34,6 +34,7 @@ You can proactively specify your AI agent during initialization:
 uvx --from git+https://github.com/github/spec-kit.git specify init <project_name> --ai claude
 uvx --from git+https://github.com/github/spec-kit.git specify init <project_name> --ai gemini
 uvx --from git+https://github.com/github/spec-kit.git specify init <project_name> --ai copilot
+uvx --from git+https://github.com/github/spec-kit.git specify init <project_name> --ai codebuddy
 ```
 
 ### Specify Script Type (Shell vs PowerShell)

scripts/bash/common.sh

@@ -19,21 +19,21 @@ get_current_branch() {
         echo "$SPECIFY_FEATURE"
         return
     fi
-    
+
     # Then check git if available
     if git rev-parse --abbrev-ref HEAD >/dev/null 2>&1; then
         git rev-parse --abbrev-ref HEAD
         return
     fi
-    
+
     # For non-git repos, try to find the latest feature directory
     local repo_root=$(get_repo_root)
     local specs_dir="$repo_root/specs"
-    
+
     if [[ -d "$specs_dir" ]]; then
         local latest_feature=""
         local highest=0
-        
+
         for dir in "$specs_dir"/*; do
             if [[ -d "$dir" ]]; then
                 local dirname=$(basename "$dir")
@@ -47,13 +47,13 @@ get_current_branch() {
                 fi
             fi
         done
-        
+
         if [[ -n "$latest_feature" ]]; then
             echo "$latest_feature"
             return
         fi
     fi
-    
+
     echo "main"  # Final fallback
 }
 
@@ -65,35 +65,77 @@ has_git() {
 check_feature_branch() {
     local branch="$1"
     local has_git_repo="$2"
-    
+
     # For non-git repos, we can't enforce branch naming but still provide output
     if [[ "$has_git_repo" != "true" ]]; then
         echo "[specify] Warning: Git repository not detected; skipped branch validation" >&2
         return 0
     fi
-    
+
     if [[ ! "$branch" =~ ^[0-9]{3}- ]]; then
         echo "ERROR: Not on a feature branch. Current branch: $branch" >&2
         echo "Feature branches should be named like: 001-feature-name" >&2
         return 1
     fi
-    
+
     return 0
 }
 
 get_feature_dir() { echo "$1/specs/$2"; }
 
+# Find feature directory by numeric prefix instead of exact branch match
+# This allows multiple branches to work on the same spec (e.g., 004-fix-bug, 004-add-feature)
+find_feature_dir_by_prefix() {
+    local repo_root="$1"
+    local branch_name="$2"
+    local specs_dir="$repo_root/specs"
+
+    # Extract numeric prefix from branch (e.g., "004" from "004-whatever")
+    if [[ ! "$branch_name" =~ ^([0-9]{3})- ]]; then
+        # If branch doesn't have numeric prefix, fall back to exact match
+        echo "$specs_dir/$branch_name"
+        return
+    fi
+
+    local prefix="${BASH_REMATCH[1]}"
+
+    # Search for directories in specs/ that start with this prefix
+    local matches=()
+    if [[ -d "$specs_dir" ]]; then
+        for dir in "$specs_dir"/"$prefix"-*; do
+            if [[ -d "$dir" ]]; then
+                matches+=("$(basename "$dir")")
+            fi
+        done
+    fi
+
+    # Handle results
+    if [[ ${#matches[@]} -eq 0 ]]; then
+        # No match found - return the branch name path (will fail later with clear error)
+        echo "$specs_dir/$branch_name"
+    elif [[ ${#matches[@]} -eq 1 ]]; then
+        # Exactly one match - perfect!
+        echo "$specs_dir/${matches[0]}"
+    else
+        # Multiple matches - this shouldn't happen with proper naming convention
+        echo "ERROR: Multiple spec directories found with prefix '$prefix': ${matches[*]}" >&2
+        echo "Please ensure only one spec directory exists per numeric prefix." >&2
+        echo "$specs_dir/$branch_name"  # Return something to avoid breaking the script
+    fi
+}
+
 get_feature_paths() {
     local repo_root=$(get_repo_root)
     local current_branch=$(get_current_branch)
     local has_git_repo="false"
-    
+
     if has_git; then
         has_git_repo="true"
     fi
-    
-    local feature_dir=$(get_feature_dir "$repo_root" "$current_branch")
-    
+
+    # Use prefix-based lookup to support multiple branches per spec
+    local feature_dir=$(find_feature_dir_by_prefix "$repo_root" "$current_branch")
+
     cat <<EOF
 REPO_ROOT='$repo_root'
 CURRENT_BRANCH='$current_branch'

scripts/bash/update-agent-context.sh

@@ -250,7 +250,7 @@ get_commands_for_language() {
             echo "cargo test && cargo clippy"
             ;;
         *"JavaScript"*|*"TypeScript"*)
-            echo "npm test && npm run lint"
+            echo "npm test \\&\\& npm run lint"
             ;;
         *)
             echo "# Add commands for $lang"
@@ -583,7 +583,7 @@ update_specific_agent() {
             update_agent_file "$ROO_FILE" "Roo Code"
             ;;
         codebuddy)
-            update_agent_file "$CODEBUDDY_FILE" "CodeBuddy"
+            update_agent_file "$CODEBUDDY_FILE" "CodeBuddy CLI"
             ;;
         q)
             update_agent_file "$Q_FILE" "Amazon Q Developer CLI"
@@ -651,7 +651,7 @@ update_all_existing_agents() {
     fi
 
     if [[ -f "$CODEBUDDY_FILE" ]]; then
-        update_agent_file "$CODEBUDDY_FILE" "CodeBuddy"
+        update_agent_file "$CODEBUDDY_FILE" "CodeBuddy CLI"
         found_agent=true
     fi
 

scripts/powershell/update-agent-context.ps1

@@ -378,7 +378,7 @@ function Update-SpecificAgent {
         'kilocode' { Update-AgentFile -TargetFile $KILOCODE_FILE -AgentName 'Kilo Code' }
         'auggie'   { Update-AgentFile -TargetFile $AUGGIE_FILE   -AgentName 'Auggie CLI' }
         'roo'      { Update-AgentFile -TargetFile $ROO_FILE      -AgentName 'Roo Code' }
-        'codebuddy' { Update-AgentFile -TargetFile $CODEBUDDY_FILE -AgentName 'CodeBuddy' }
+        'codebuddy' { Update-AgentFile -TargetFile $CODEBUDDY_FILE -AgentName 'CodeBuddy CLI' }
         'q'        { Update-AgentFile -TargetFile $Q_FILE        -AgentName 'Amazon Q Developer CLI' }
         default { Write-Err "Unknown agent type '$Type'"; Write-Err 'Expected: claude|gemini|copilot|cursor-agent|qwen|opencode|codex|windsurf|kilocode|auggie|roo|codebuddy|q'; return $false }
     }
@@ -397,7 +397,7 @@ function Update-AllExistingAgents {
     if (Test-Path $KILOCODE_FILE) { if (-not (Update-AgentFile -TargetFile $KILOCODE_FILE -AgentName 'Kilo Code')) { $ok = $false }; $found = $true }
     if (Test-Path $AUGGIE_FILE)   { if (-not (Update-AgentFile -TargetFile $AUGGIE_FILE   -AgentName 'Auggie CLI')) { $ok = $false }; $found = $true }
     if (Test-Path $ROO_FILE)      { if (-not (Update-AgentFile -TargetFile $ROO_FILE      -AgentName 'Roo Code')) { $ok = $false }; $found = $true }
-    if (Test-Path $CODEBUDDY_FILE) { if (-not (Update-AgentFile -TargetFile $CODEBUDDY_FILE -AgentName 'CodeBuddy')) { $ok = $false }; $found = $true }
+    if (Test-Path $CODEBUDDY_FILE) { if (-not (Update-AgentFile -TargetFile $CODEBUDDY_FILE -AgentName 'CodeBuddy CLI')) { $ok = $false }; $found = $true }
     if (Test-Path $Q_FILE)        { if (-not (Update-AgentFile -TargetFile $Q_FILE        -AgentName 'Amazon Q Developer CLI')) { $ok = $false }; $found = $true }
     if (-not $found) {
         Write-Info 'No existing agent files found, creating default Claude file...'

src/specify_cli/__init__.py

@@ -129,7 +129,7 @@ AGENT_CONFIG = {
     "codebuddy": {
         "name": "CodeBuddy",
         "folder": ".codebuddy/",
-        "install_url": "https://www.codebuddy.ai",
+        "install_url": "https://www.codebuddy.ai/cli",
         "requires_cli": True,
     },
     "roo": {
@@ -485,6 +485,73 @@ def init_git_repo(project_path: Path, quiet: bool = False) -> Tuple[bool, Option
     finally:
         os.chdir(original_cwd)
 
+def handle_vscode_settings(sub_item, dest_file, rel_path, verbose=False, tracker=None) -> None:
+    """Handle merging or copying of .vscode/settings.json files."""
+    def log(message, color="green"):
+        if verbose and not tracker:
+            console.print(f"[{color}]{message}[/] {rel_path}")
+
+    try:
+        with open(sub_item, 'r', encoding='utf-8') as f:
+            new_settings = json.load(f)
+
+        if dest_file.exists():
+            merged = merge_json_files(dest_file, new_settings, verbose=verbose and not tracker)
+            with open(dest_file, 'w', encoding='utf-8') as f:
+                json.dump(merged, f, indent=4)
+                f.write('\n')
+            log("Merged:", "green")
+        else:
+            shutil.copy2(sub_item, dest_file)
+            log("Copied (no existing settings.json):", "blue")
+
+    except Exception as e:
+        log(f"Warning: Could not merge, copying instead: {e}", "yellow")
+        shutil.copy2(sub_item, dest_file)
+
+def merge_json_files(existing_path: Path, new_content: dict, verbose: bool = False) -> dict:
+    """Merge new JSON content into existing JSON file.
+
+    Performs a deep merge where:
+    - New keys are added
+    - Existing keys are preserved unless overwritten by new content
+    - Nested dictionaries are merged recursively
+    - Lists and other values are replaced (not merged)
+
+    Args:
+        existing_path: Path to existing JSON file
+        new_content: New JSON content to merge in
+        verbose: Whether to print merge details
+
+    Returns:
+        Merged JSON content as dict
+    """
+    try:
+        with open(existing_path, 'r', encoding='utf-8') as f:
+            existing_content = json.load(f)
+    except (FileNotFoundError, json.JSONDecodeError):
+        # If file doesn't exist or is invalid, just use new content
+        return new_content
+
+    def deep_merge(base: dict, update: dict) -> dict:
+        """Recursively merge update dict into base dict."""
+        result = base.copy()
+        for key, value in update.items():
+            if key in result and isinstance(result[key], dict) and isinstance(value, dict):
+                # Recursively merge nested dictionaries
+                result[key] = deep_merge(result[key], value)
+            else:
+                # Add new key or replace existing value
+                result[key] = value
+        return result
+
+    merged = deep_merge(existing_content, new_content)
+
+    if verbose:
+        console.print(f"[cyan]Merged JSON file:[/cyan] {existing_path.name}")
+
+    return merged
+
 def download_template_from_github(ai_assistant: str, download_dir: Path, *, script_type: str = "sh", verbose: bool = True, show_progress: bool = True, client: httpx.Client = None, debug: bool = False, github_token: str = None) -> Tuple[Path, dict]:
     repo_owner = "github"
     repo_name = "spec-kit"
@@ -676,7 +743,11 @@ def download_and_extract_template(project_path: Path, ai_assistant: str, script_
                                         rel_path = sub_item.relative_to(item)
                                         dest_file = dest_path / rel_path
                                         dest_file.parent.mkdir(parents=True, exist_ok=True)
-                                        shutil.copy2(sub_item, dest_file)
+                                        # Special handling for .vscode/settings.json - merge instead of overwrite
+                                        if dest_file.name == "settings.json" and dest_file.parent.name == ".vscode":
+                                            handle_vscode_settings(sub_item, dest_file, rel_path, verbose, tracker)
+                                        else:
+                                            shutil.copy2(sub_item, dest_file)
                             else:
                                 shutil.copytree(item, dest_path)
                         else:

templates/commands/implement.md

@@ -79,6 +79,12 @@ You **MUST** consider the user input before proceeding (if not empty).
    - **Java**: `target/`, `*.class`, `*.jar`, `.gradle/`, `build/`
    - **C#/.NET**: `bin/`, `obj/`, `*.user`, `*.suo`, `packages/`
    - **Go**: `*.exe`, `*.test`, `vendor/`, `*.out`
+   - **Ruby**: `.bundle/`, `log/`, `tmp/`, `*.gem`, `vendor/bundle/`
+   - **PHP**: `vendor/`, `*.log`, `*.cache`, `*.env`
+   - **Rust**: `target/`, `debug/`, `release/`, `*.rs.bk`, `*.rlib`, `*.prof*`, `.idea/`, `*.log`, `.env*`
+   - **Kotlin**: `build/`, `out/`, `.gradle/`, `.idea/`, `*.class`, `*.jar`, `*.iml`, `*.log`, `.env*`
+   - **C++**: `build/`, `bin/`, `obj/`, `out/`, `*.o`, `*.so`, `*.a`, `*.exe`, `*.dll`, `.idea/`, `*.log`, `.env*`
+   - **C**: `build/`, `bin/`, `obj/`, `out/`, `*.o`, `*.a`, `*.so`, `*.exe`, `Makefile`, `config.log`, `.idea/`, `*.log`, `.env*`
    - **Universal**: `.DS_Store`, `Thumbs.db`, `*.tmp`, `*.swp`, `.vscode/`, `.idea/`
    
    **Tool-Specific Patterns**: