fix: handle pipeline resume edge cases and improve robustness

This commit fixes several edge cases when resuming features stuck in pipeline steps:

- Detect if feature is stuck in a pipeline step during resume
- Handle case where context file is missing (restart from beginning)
- Handle case where pipeline step no longer exists in config
- Add dedicated resumePipelineFeature() method for pipeline-specific resume logic
- Add detectPipelineStatus() to extract and validate pipeline step information
- Add resumeFromPipelineStep() to resume from a specific pipeline step index
- Update board view to check context availability for features with pipeline status

Edge cases handled:
1. No context file → restart entire pipeline from beginning
2. Step no longer exists in config → complete feature without pipeline
3. Valid step exists → resume from the crashed step

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

apps/server/src/services/auto-mode-service.ts

@@ -700,6 +700,25 @@ Complete the pipeline step instructions above. Review the previous work and appl
       throw new Error('already running');
     }
 
+    // Load feature to check status
+    const feature = await this.loadFeature(projectPath, featureId);
+    if (!feature) {
+      throw new Error(`Feature ${featureId} not found`);
+    }
+
+    // Check if feature is stuck in a pipeline step
+    const pipelineInfo = await this.detectPipelineStatus(
+      projectPath,
+      featureId,
+      feature.status || ''
+    );
+
+    if (pipelineInfo.isPipeline) {
+      // Feature stuck in pipeline - use pipeline resume
+      return this.resumePipelineFeature(projectPath, featureId, useWorktrees, pipelineInfo);
+    }
+
+    // Normal resume flow for non-pipeline features
     // Check if context exists in .automaker directory
     const featureDir = getFeatureDir(projectPath, featureId);
     const contextPath = path.join(featureDir, 'agent-output.md');
@@ -724,6 +743,239 @@ Complete the pipeline step instructions above. Review the previous work and appl
     return this.executeFeature(projectPath, featureId, useWorktrees, false);
   }
 
+  /**
+   * Resume a feature that crashed during pipeline execution
+   * Handles edge cases: no context, missing step, deleted pipeline step
+   * @param pipelineInfo - Information about the pipeline status from detectPipelineStatus()
+   */
+  private async resumePipelineFeature(
+    projectPath: string,
+    featureId: string,
+    useWorktrees: boolean,
+    pipelineInfo: {
+      isPipeline: boolean;
+      stepId: string | null;
+      stepIndex: number;
+      totalSteps: number;
+      step: PipelineStep | null;
+      config: PipelineConfig | null;
+    }
+  ): Promise<void> {
+    console.log(
+      `[AutoMode] Resuming feature ${featureId} from pipeline step ${pipelineInfo.stepId}`
+    );
+
+    // Check for context file
+    const featureDir = getFeatureDir(projectPath, featureId);
+    const contextPath = path.join(featureDir, 'agent-output.md');
+
+    let hasContext = false;
+    try {
+      await secureFs.access(contextPath);
+      hasContext = true;
+    } catch {
+      // No context
+    }
+
+    // Edge Case 1: No context file - restart entire pipeline from beginning
+    if (!hasContext) {
+      console.warn(
+        `[AutoMode] No context found for pipeline feature ${featureId}, restarting from beginning`
+      );
+
+      // Reset status to in_progress and start fresh
+      await this.updateFeatureStatus(projectPath, featureId, 'in_progress');
+
+      // Remove temporary entry
+      this.runningFeatures.delete(featureId);
+
+      return this.executeFeature(projectPath, featureId, useWorktrees, false);
+    }
+
+    // Edge Case 2: Step no longer exists in pipeline config
+    if (pipelineInfo.stepIndex === -1) {
+      console.warn(
+        `[AutoMode] Step ${pipelineInfo.stepId} no longer exists in pipeline, completing feature without pipeline`
+      );
+
+      const feature = await this.loadFeature(projectPath, featureId);
+      const finalStatus = feature?.skipTests ? 'waiting_approval' : 'verified';
+
+      await this.updateFeatureStatus(projectPath, featureId, finalStatus);
+
+      this.emitAutoModeEvent('auto_mode_feature_complete', {
+        featureId,
+        passes: true,
+        message:
+          'Pipeline step no longer exists - feature completed without remaining pipeline steps',
+        projectPath,
+      });
+
+      // Remove temporary entry
+      this.runningFeatures.delete(featureId);
+      return;
+    }
+
+    // Normal case: Valid pipeline step exists, has context
+    // Resume from the stuck step (re-execute the step that crashed)
+    if (!pipelineInfo.config) {
+      throw new Error('Pipeline config is null but stepIndex is valid - this should not happen');
+    }
+
+    return this.resumeFromPipelineStep(
+      projectPath,
+      featureId,
+      useWorktrees,
+      pipelineInfo.stepIndex,
+      pipelineInfo.config
+    );
+  }
+
+  /**
+   * Resume pipeline execution from a specific step index
+   * Re-executes the step that crashed, then continues with remaining steps
+   * @param pipelineConfig - Pipeline config passed from detectPipelineStatus to avoid re-reading
+   */
+  private async resumeFromPipelineStep(
+    projectPath: string,
+    featureId: string,
+    useWorktrees: boolean,
+    startFromStepIndex: number,
+    pipelineConfig: PipelineConfig
+  ): Promise<void> {
+    // Load feature and validate
+    const feature = await this.loadFeature(projectPath, featureId);
+    if (!feature) {
+      throw new Error(`Feature ${featureId} not found`);
+    }
+
+    const sortedSteps = [...pipelineConfig.steps].sort((a, b) => a.order - b.order);
+
+    // Validate step index
+    if (startFromStepIndex < 0 || startFromStepIndex >= sortedSteps.length) {
+      throw new Error(`Invalid step index: ${startFromStepIndex}`);
+    }
+
+    // Get steps to execute (from startFromStepIndex onwards)
+    const stepsToExecute = sortedSteps.slice(startFromStepIndex);
+
+    console.log(
+      `[AutoMode] Resuming pipeline for feature ${featureId} from step ${startFromStepIndex + 1}/${sortedSteps.length}`
+    );
+
+    // Add to running features immediately
+    const abortController = new AbortController();
+    this.runningFeatures.set(featureId, {
+      featureId,
+      projectPath,
+      worktreePath: null, // Will be set below
+      branchName: feature.branchName ?? null,
+      abortController,
+      isAutoMode: false,
+      startTime: Date.now(),
+    });
+
+    try {
+      // Validate project path
+      validateWorkingDirectory(projectPath);
+
+      // Derive workDir from feature.branchName
+      let worktreePath: string | null = null;
+      const branchName = feature.branchName;
+
+      if (useWorktrees && branchName) {
+        worktreePath = await this.findExistingWorktreeForBranch(projectPath, branchName);
+        if (worktreePath) {
+          console.log(`[AutoMode] Using worktree for branch "${branchName}": ${worktreePath}`);
+        } else {
+          console.warn(
+            `[AutoMode] Worktree for branch "${branchName}" not found, using project path`
+          );
+        }
+      }
+
+      const workDir = worktreePath ? path.resolve(worktreePath) : path.resolve(projectPath);
+      validateWorkingDirectory(workDir);
+
+      // Update running feature with worktree info
+      const runningFeature = this.runningFeatures.get(featureId);
+      if (runningFeature) {
+        runningFeature.worktreePath = worktreePath;
+        runningFeature.branchName = branchName ?? null;
+      }
+
+      // Emit resume event
+      this.emitAutoModeEvent('auto_mode_feature_start', {
+        featureId,
+        projectPath,
+        feature: {
+          id: featureId,
+          title: feature.title || 'Resuming Pipeline',
+          description: feature.description,
+        },
+      });
+
+      this.emitAutoModeEvent('auto_mode_progress', {
+        featureId,
+        content: `Resuming from pipeline step ${startFromStepIndex + 1}/${sortedSteps.length}`,
+        projectPath,
+      });
+
+      // Load autoLoadClaudeMd setting
+      const autoLoadClaudeMd = await getAutoLoadClaudeMdSetting(
+        projectPath,
+        this.settingsService,
+        '[AutoMode]'
+      );
+
+      // Execute remaining pipeline steps (starting from crashed step)
+      await this.executePipelineSteps(
+        projectPath,
+        featureId,
+        feature,
+        stepsToExecute,
+        workDir,
+        abortController,
+        autoLoadClaudeMd
+      );
+
+      // Determine final status
+      const finalStatus = feature.skipTests ? 'waiting_approval' : 'verified';
+      await this.updateFeatureStatus(projectPath, featureId, finalStatus);
+
+      console.log('[AutoMode] Pipeline resume completed successfully');
+
+      this.emitAutoModeEvent('auto_mode_feature_complete', {
+        featureId,
+        passes: true,
+        message: 'Pipeline resumed and completed successfully',
+        projectPath,
+      });
+    } catch (error) {
+      const errorInfo = classifyError(error);
+
+      if (errorInfo.isAbort) {
+        this.emitAutoModeEvent('auto_mode_feature_complete', {
+          featureId,
+          passes: false,
+          message: 'Pipeline resume stopped by user',
+          projectPath,
+        });
+      } else {
+        console.error(`[AutoMode] Pipeline resume failed for feature ${featureId}:`, error);
+        await this.updateFeatureStatus(projectPath, featureId, 'backlog');
+        this.emitAutoModeEvent('auto_mode_error', {
+          featureId,
+          error: errorInfo.message,
+          errorType: errorInfo.type,
+          projectPath,
+        });
+      }
+    } finally {
+      this.runningFeatures.delete(featureId);
+    }
+  }
+
   /**
    * Follow up on a feature with additional instructions
    */
@@ -2504,6 +2756,105 @@ Review the previous work and continue the implementation. If the feature appears
     });
   }
 
+  /**
+   * Detect if a feature is stuck in a pipeline step and extract step info
+   * @returns Pipeline information including step details and config
+   */
+  private async detectPipelineStatus(
+    projectPath: string,
+    featureId: string,
+    currentStatus: string
+  ): Promise<{
+    isPipeline: boolean;
+    stepId: string | null;
+    stepIndex: number;
+    totalSteps: number;
+    step: PipelineStep | null;
+    config: PipelineConfig | null;
+  }> {
+    // Check if status is pipeline format using PipelineService
+    const isPipeline = pipelineService.isPipelineStatus(currentStatus);
+
+    if (!isPipeline) {
+      return {
+        isPipeline: false,
+        stepId: null,
+        stepIndex: -1,
+        totalSteps: 0,
+        step: null,
+        config: null,
+      };
+    }
+
+    // Extract step ID using PipelineService
+    const stepId = pipelineService.getStepIdFromStatus(currentStatus);
+
+    if (!stepId) {
+      console.warn(
+        `[AutoMode] Feature ${featureId} has invalid pipeline status format: ${currentStatus}`
+      );
+      return {
+        isPipeline: true,
+        stepId: null,
+        stepIndex: -1,
+        totalSteps: 0,
+        step: null,
+        config: null,
+      };
+    }
+
+    // Load pipeline config
+    const config = await pipelineService.getPipelineConfig(projectPath);
+
+    if (!config || config.steps.length === 0) {
+      // Pipeline config doesn't exist or empty - feature stuck with invalid pipeline status
+      console.warn(
+        `[AutoMode] Feature ${featureId} has pipeline status but no pipeline config exists`
+      );
+      return {
+        isPipeline: true,
+        stepId,
+        stepIndex: -1,
+        totalSteps: 0,
+        step: null,
+        config: null,
+      };
+    }
+
+    // Find the step using PipelineService
+    const step = await pipelineService.getStep(projectPath, stepId);
+    const sortedSteps = [...config.steps].sort((a, b) => a.order - b.order);
+    const stepIndex = sortedSteps.findIndex((s) => s.id === stepId);
+
+    if (stepIndex === -1 || !step) {
+      // Step not found in current config - step was deleted/changed
+      console.warn(
+        `[AutoMode] Feature ${featureId} stuck in step ${stepId} which no longer exists in pipeline config`
+      );
+      return {
+        isPipeline: true,
+        stepId,
+        stepIndex: -1,
+        totalSteps: sortedSteps.length,
+        step: null,
+        config,
+      };
+    }
+
+    console.log(
+      `[AutoMode] Detected pipeline status for feature ${featureId}: step ${stepIndex + 1}/${sortedSteps.length} (${step.name})`
+    );
+
+    return {
+      isPipeline: true,
+      stepId,
+      stepIndex,
+      totalSteps: sortedSteps.length,
+      step,
+      config,
+    };
+  }
+
   /**
    * Build a focused prompt for executing a single task.
    * Each task gets minimal context to keep the agent focused.

apps/ui/src/components/views/board-view/hooks/use-board-effects.ts

@@ -123,7 +123,10 @@ export function useBoardEffects({
     const checkAllContexts = async () => {
       const featuresWithPotentialContext = features.filter(
         (f) =>
-          f.status === 'in_progress' || f.status === 'waiting_approval' || f.status === 'verified'
+          f.status === 'in_progress' ||
+          f.status === 'waiting_approval' ||
+          f.status === 'verified' ||
+          (typeof f.status === 'string' && f.status.startsWith('pipeline_'))
       );
       const contextChecks = await Promise.all(
         featuresWithPotentialContext.map(async (f) => ({

package-lock.json

@@ -455,6 +455,7 @@
       "integrity": "sha512-e7jT4DxYvIDLk1ZHmU/m/mB19rex9sv0c2ftBtjSBv+kVM/902eh0fINUzD7UwLLNR+jU585GxUJ8/EBfAM5fw==",
       "dev": true,
       "license": "MIT",
+      "peer": true,
       "dependencies": {
         "@babel/code-frame": "^7.27.1",
         "@babel/generator": "^7.28.5",
@@ -1038,6 +1039,7 @@
       "resolved": "https://registry.npmjs.org/@codemirror/view/-/view-6.39.4.tgz",
       "integrity": "sha512-xMF6OfEAUVY5Waega4juo1QGACfNkNF+aJLqpd8oUJz96ms2zbfQ9Gh35/tI3y8akEV31FruKfj7hBnIU/nkqA==",
       "license": "MIT",
+      "peer": true,
       "dependencies": {
         "@codemirror/state": "^6.5.0",
         "crelt": "^1.0.6",
@@ -1080,6 +1082,7 @@
       "resolved": "https://registry.npmjs.org/@dnd-kit/core/-/core-6.3.1.tgz",
       "integrity": "sha512-xkGBRQQab4RLwgXxoqETICr6S5JlogafbhNsidmrkVv2YRs5MLwpjoF2qpiGjQt8S9AoxtIV603s0GIUpY5eYQ==",
       "license": "MIT",
+      "peer": true,
       "dependencies": {
         "@dnd-kit/accessibility": "^3.1.1",
         "@dnd-kit/utilities": "^3.2.2",
@@ -1900,7 +1903,6 @@
       "dev": true,
       "license": "BSD-2-Clause",
       "optional": true,
-      "peer": true,
       "dependencies": {
         "cross-dirname": "^0.1.0",
         "debug": "^4.3.4",
@@ -1922,7 +1924,6 @@
       "dev": true,
       "license": "MIT",
       "optional": true,
-      "peer": true,
       "dependencies": {
         "graceful-fs": "^4.2.0",
         "jsonfile": "^6.0.1",
@@ -1939,7 +1940,6 @@
       "dev": true,
       "license": "MIT",
       "optional": true,
-      "peer": true,
       "dependencies": {
         "universalify": "^2.0.0"
       },
@@ -1954,7 +1954,6 @@
       "dev": true,
       "license": "MIT",
       "optional": true,
-      "peer": true,
       "engines": {
         "node": ">= 10.0.0"
       }
@@ -2722,7 +2721,6 @@
       "integrity": "sha512-A5P/LfWGFSl6nsckYtjw9da+19jB8hkJ6ACTGcDfEJ0aE+l2n2El7dsVM7UVHZQ9s2lmYMWlrS21YLy2IR1LUw==",
       "license": "MIT",
       "optional": true,
-      "peer": true,
       "engines": {
         "node": ">=18"
       }
@@ -2847,7 +2845,6 @@
       "os": [
         "linux"
       ],
-      "peer": true,
       "funding": {
         "url": "https://opencollective.com/libvips"
       }
@@ -2864,7 +2861,6 @@
       "os": [
         "linux"
       ],
-      "peer": true,
       "funding": {
         "url": "https://opencollective.com/libvips"
       }
@@ -2881,7 +2877,6 @@
       "os": [
         "linux"
       ],
-      "peer": true,
       "funding": {
         "url": "https://opencollective.com/libvips"
       }
@@ -2990,7 +2985,6 @@
       "os": [
         "linux"
       ],
-      "peer": true,
       "engines": {
         "node": "^18.17.0 || ^20.3.0 || >=21.0.0"
       },
@@ -3013,7 +3007,6 @@
       "os": [
         "linux"
       ],
-      "peer": true,
       "engines": {
         "node": "^18.17.0 || ^20.3.0 || >=21.0.0"
       },
@@ -3036,7 +3029,6 @@
       "os": [
         "linux"
       ],
-      "peer": true,
       "engines": {
         "node": "^18.17.0 || ^20.3.0 || >=21.0.0"
       },
@@ -3122,7 +3114,6 @@
       ],
       "license": "Apache-2.0 AND LGPL-3.0-or-later AND MIT",
       "optional": true,
-      "peer": true,
       "dependencies": {
         "@emnapi/runtime": "^1.7.0"
       },
@@ -3145,7 +3136,6 @@
       "os": [
         "win32"
       ],
-      "peer": true,
       "engines": {
         "node": "^18.17.0 || ^20.3.0 || >=21.0.0"
       },
@@ -3165,7 +3155,6 @@
       "os": [
         "win32"
       ],
-      "peer": true,
       "engines": {
         "node": "^18.17.0 || ^20.3.0 || >=21.0.0"
       },
@@ -3565,8 +3554,7 @@
       "version": "16.0.10",
       "resolved": "https://registry.npmjs.org/@next/env/-/env-16.0.10.tgz",
       "integrity": "sha512-8tuaQkyDVgeONQ1MeT9Mkk8pQmZapMKFh5B+OrFUlG3rVmYTXcXlBetBgTurKXGaIZvkoqRT9JL5K3phXcgang==",
-      "license": "MIT",
-      "peer": true
+      "license": "MIT"
     },
     "node_modules/@next/swc-darwin-arm64": {
       "version": "16.0.10",
@@ -3580,7 +3568,6 @@
       "os": [
         "darwin"
       ],
-      "peer": true,
       "engines": {
         "node": ">= 10"
       }
@@ -3597,7 +3584,6 @@
       "os": [
         "darwin"
       ],
-      "peer": true,
       "engines": {
         "node": ">= 10"
       }
@@ -3614,7 +3600,6 @@
       "os": [
         "linux"
       ],
-      "peer": true,
       "engines": {
         "node": ">= 10"
       }
@@ -3631,7 +3616,6 @@
       "os": [
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-      "peer": true,
       "engines": {
         "node": ">= 10"
       }
@@ -3648,7 +3632,6 @@
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-      "peer": true,
       "engines": {
         "node": ">= 10"
       }
@@ -3665,7 +3648,6 @@
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         "linux"
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-      "peer": true,
       "engines": {
         "node": ">= 10"
       }
@@ -3682,7 +3664,6 @@
       "os": [
         "win32"
       ],
-      "peer": true,
       "engines": {
         "node": ">= 10"
       }
@@ -3699,7 +3680,6 @@
       "os": [
         "win32"
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-      "peer": true,
       "engines": {
         "node": ">= 10"
       }
@@ -3790,6 +3770,7 @@
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       "devOptional": true,
       "license": "Apache-2.0",
+      "peer": true,
       "dependencies": {
         "playwright": "1.57.0"
       },
@@ -5230,7 +5211,6 @@
       "resolved": "https://registry.npmjs.org/@swc/helpers/-/helpers-0.5.15.tgz",
       "integrity": "sha512-JQ5TuMi45Owi4/BIMAJBoSQoOJu12oOk/gADqlcUL9JEdHB8vyjUSsxqeNXnmXHjYKMi2WcYtezGEEhqUI/E2g==",
       "license": "Apache-2.0",
-      "peer": true,
       "dependencies": {
         "tslib": "^2.8.0"
       }
@@ -5564,6 +5544,7 @@
       "resolved": "https://registry.npmjs.org/@tanstack/react-router/-/react-router-1.141.6.tgz",
       "integrity": "sha512-qWFxi2D6eGc1L03RzUuhyEOplZ7Q6q62YOl7Of9Y0q4YjwQwxRm4zxwDVtvUIoy4RLVCpqp5UoE+Nxv2PY9trg==",
       "license": "MIT",
+      "peer": true,
       "dependencies": {
         "@tanstack/history": "1.141.0",
         "@tanstack/react-store": "^0.8.0",
@@ -5990,6 +5971,7 @@
       "integrity": "sha512-sKYVuV7Sv9fbPIt/442koC7+IIwK5olP1KWeD88e/idgoJqDm3JV/YUiPwkoKK92ylff2MGxSz1CSjsXelx0YA==",
       "dev": true,
       "license": "MIT",
+      "peer": true,
       "dependencies": {
         "@types/body-parser": "*",
         "@types/express-serve-static-core": "^5.0.0",
@@ -6132,6 +6114,7 @@
       "resolved": "https://registry.npmjs.org/@types/react/-/react-19.2.7.tgz",
       "integrity": "sha512-MWtvHrGZLFttgeEj28VXHxpmwYbor/ATPYbBfSFZEIRK0ecCFLl2Qo55z52Hss+UV9CRN7trSeq1zbgx7YDWWg==",
       "license": "MIT",
+      "peer": true,
       "dependencies": {
         "csstype": "^3.2.2"
       }
@@ -6142,6 +6125,7 @@
       "integrity": "sha512-jp2L/eY6fn+KgVVQAOqYItbF0VY/YApe5Mz2F0aykSO8gx31bYCZyvSeYxCHKvzHG5eZjc+zyaS5BrBWya2+kQ==",
       "devOptional": true,
       "license": "MIT",
+      "peer": true,
       "peerDependencies": {
         "@types/react": "^19.2.0"
       }
@@ -6247,6 +6231,7 @@
       "integrity": "sha512-6/cmF2piao+f6wSxUsJLZjck7OQsYyRtcOZS02k7XINSNlz93v6emM8WutDQSXnroG2xwYlEVHJI+cPA7CPM3Q==",
       "dev": true,
       "license": "MIT",
+      "peer": true,
       "dependencies": {
         "@typescript-eslint/scope-manager": "8.50.0",
         "@typescript-eslint/types": "8.50.0",
@@ -6740,7 +6725,8 @@
       "version": "5.5.0",
       "resolved": "https://registry.npmjs.org/@xterm/xterm/-/xterm-5.5.0.tgz",
       "integrity": "sha512-hqJHYaQb5OptNunnyAnkHyM8aCjZ1MEIDTQu1iIbbTD/xops91NB5yq1ZK/dC2JDbVWtF23zUtl9JE2NqwT87A==",
-      "license": "MIT"
+      "license": "MIT",
+      "peer": true
     },
     "node_modules/@xyflow/react": {
       "version": "12.10.0",
@@ -6838,6 +6824,7 @@
       "integrity": "sha512-NZyJarBfL7nWwIq+FDL6Zp/yHEhePMNnnJ0y3qfieCrmNvYct8uvtiV41UvlSe6apAfk0fY1FbWx+NwfmpvtTg==",
       "dev": true,
       "license": "MIT",
+      "peer": true,
       "bin": {
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