refactor(06-03): migrate Batch 5 secondary routes and wire router index

- features/routes/list.ts: Add facadeFactory parameter, use facade.detectOrphanedFeatures
- projects/routes/overview.ts: Add facadeFactory parameter, use facade.getRunningAgents/getStatusForProject
- features/index.ts: Pass facadeFactory to list handler
- projects/index.ts: Pass facadeFactory to overview handler
- auto-mode/index.ts: Accept facadeFactory parameter and wire to all route handlers
- All routes maintain backward compatibility with autoModeService fallback

apps/server/src/routes/auto-mode/index.ts

@@ -1,11 +1,13 @@
 /**
  * Auto Mode routes - HTTP API for autonomous feature implementation
  *
- * Uses the AutoModeService for real feature execution with Claude Agent SDK
+ * Uses the AutoModeService for real feature execution with Claude Agent SDK.
+ * Supports optional facadeFactory for per-project facade creation during migration.
  */
 
 import { Router } from 'express';
 import type { AutoModeService } from '../../services/auto-mode-service.js';
+import type { AutoModeServiceFacade } from '../../services/auto-mode/index.js';
 import { validatePathParams } from '../../middleware/validate-paths.js';
 import { createStopFeatureHandler } from './routes/stop-feature.js';
 import { createStatusHandler } from './routes/status.js';
@@ -21,59 +23,82 @@ import { createCommitFeatureHandler } from './routes/commit-feature.js';
 import { createApprovePlanHandler } from './routes/approve-plan.js';
 import { createResumeInterruptedHandler } from './routes/resume-interrupted.js';
 
-export function createAutoModeRoutes(autoModeService: AutoModeService): Router {
+/**
+ * Create auto-mode routes with optional facade factory.
+ *
+ * @param autoModeService - The AutoModeService instance (for backward compatibility)
+ * @param facadeFactory - Optional factory for creating per-project facades
+ */
+export function createAutoModeRoutes(
+  autoModeService: AutoModeService,
+  facadeFactory?: (projectPath: string) => AutoModeServiceFacade
+): Router {
   const router = Router();
 
   // Auto loop control routes
-  router.post('/start', validatePathParams('projectPath'), createStartHandler(autoModeService));
-  router.post('/stop', validatePathParams('projectPath'), createStopHandler(autoModeService));
+  router.post(
+    '/start',
+    validatePathParams('projectPath'),
+    createStartHandler(autoModeService, facadeFactory)
+  );
+  router.post(
+    '/stop',
+    validatePathParams('projectPath'),
+    createStopHandler(autoModeService, facadeFactory)
+  );
 
+  // Note: stop-feature doesn't have projectPath, so we pass undefined for facade.
+  // When we fully migrate, we can update stop-feature to use a different approach.
   router.post('/stop-feature', createStopFeatureHandler(autoModeService));
-  router.post('/status', validatePathParams('projectPath?'), createStatusHandler(autoModeService));
+  router.post(
+    '/status',
+    validatePathParams('projectPath?'),
+    createStatusHandler(autoModeService, facadeFactory)
+  );
   router.post(
     '/run-feature',
     validatePathParams('projectPath'),
-    createRunFeatureHandler(autoModeService)
+    createRunFeatureHandler(autoModeService, facadeFactory)
   );
   router.post(
     '/verify-feature',
     validatePathParams('projectPath'),
-    createVerifyFeatureHandler(autoModeService)
+    createVerifyFeatureHandler(autoModeService, facadeFactory)
   );
   router.post(
     '/resume-feature',
     validatePathParams('projectPath'),
-    createResumeFeatureHandler(autoModeService)
+    createResumeFeatureHandler(autoModeService, facadeFactory)
   );
   router.post(
     '/context-exists',
     validatePathParams('projectPath'),
-    createContextExistsHandler(autoModeService)
+    createContextExistsHandler(autoModeService, facadeFactory)
   );
   router.post(
     '/analyze-project',
     validatePathParams('projectPath'),
-    createAnalyzeProjectHandler(autoModeService)
+    createAnalyzeProjectHandler(autoModeService, facadeFactory)
   );
   router.post(
     '/follow-up-feature',
     validatePathParams('projectPath', 'imagePaths[]'),
-    createFollowUpFeatureHandler(autoModeService)
+    createFollowUpFeatureHandler(autoModeService, facadeFactory)
   );
   router.post(
     '/commit-feature',
     validatePathParams('projectPath', 'worktreePath?'),
-    createCommitFeatureHandler(autoModeService)
+    createCommitFeatureHandler(autoModeService, facadeFactory)
   );
   router.post(
     '/approve-plan',
     validatePathParams('projectPath'),
-    createApprovePlanHandler(autoModeService)
+    createApprovePlanHandler(autoModeService, facadeFactory)
   );
   router.post(
     '/resume-interrupted',
     validatePathParams('projectPath'),
-    createResumeInterruptedHandler(autoModeService)
+    createResumeInterruptedHandler(autoModeService, facadeFactory)
   );
 
   return router;

apps/server/src/routes/features/index.ts

@@ -6,6 +6,7 @@ import { Router } from 'express';
 import { FeatureLoader } from '../../services/feature-loader.js';
 import type { SettingsService } from '../../services/settings-service.js';
 import type { AutoModeService } from '../../services/auto-mode-service.js';
+import type { AutoModeServiceFacade } from '../../services/auto-mode/index.js';
 import type { EventEmitter } from '../../lib/events.js';
 import { validatePathParams } from '../../middleware/validate-paths.js';
 import { createListHandler } from './routes/list.js';
@@ -24,14 +25,15 @@ export function createFeaturesRoutes(
   featureLoader: FeatureLoader,
   settingsService?: SettingsService,
   events?: EventEmitter,
-  autoModeService?: AutoModeService
+  autoModeService?: AutoModeService,
+  facadeFactory?: (projectPath: string) => AutoModeServiceFacade
 ): Router {
   const router = Router();
 
   router.post(
     '/list',
     validatePathParams('projectPath'),
-    createListHandler(featureLoader, autoModeService)
+    createListHandler(featureLoader, autoModeService, facadeFactory)
   );
   router.post('/get', validatePathParams('projectPath'), createGetHandler(featureLoader));
   router.post(

apps/server/src/routes/features/routes/list.ts

@@ -8,12 +8,17 @@
 import type { Request, Response } from 'express';
 import { FeatureLoader } from '../../../services/feature-loader.js';
 import type { AutoModeService } from '../../../services/auto-mode-service.js';
+import type { AutoModeServiceFacade } from '../../../services/auto-mode/index.js';
 import { getErrorMessage, logError } from '../common.js';
 import { createLogger } from '@automaker/utils';
 
 const logger = createLogger('FeaturesListRoute');
 
-export function createListHandler(featureLoader: FeatureLoader, autoModeService?: AutoModeService) {
+export function createListHandler(
+  featureLoader: FeatureLoader,
+  autoModeService?: AutoModeService,
+  facadeFactory?: (projectPath: string) => AutoModeServiceFacade
+) {
   return async (req: Request, res: Response): Promise<void> => {
     try {
       const { projectPath } = req.body as { projectPath: string };
@@ -29,7 +34,21 @@ export function createListHandler(featureLoader: FeatureLoader, autoModeService?
       // This detects features whose branches no longer exist (e.g., after merge/delete)
       // We don't await this to keep the list response fast
       // Note: detectOrphanedFeatures handles errors internally and always resolves
-      if (autoModeService) {
+      if (facadeFactory) {
+        const facade = facadeFactory(projectPath);
+        facade.detectOrphanedFeatures().then((orphanedFeatures) => {
+          if (orphanedFeatures.length > 0) {
+            logger.info(
+              `[ProjectLoad] Detected ${orphanedFeatures.length} orphaned feature(s) in ${projectPath}`
+            );
+            for (const { feature, missingBranch } of orphanedFeatures) {
+              logger.info(
+                `[ProjectLoad] Orphaned: ${feature.title || feature.id} - branch "${missingBranch}" no longer exists`
+              );
+            }
+          }
+        });
+      } else if (autoModeService) {
         autoModeService.detectOrphanedFeatures(projectPath).then((orphanedFeatures) => {
           if (orphanedFeatures.length > 0) {
             logger.info(

apps/server/src/routes/projects/index.ts

@@ -5,6 +5,7 @@
 import { Router } from 'express';
 import type { FeatureLoader } from '../../services/feature-loader.js';
 import type { AutoModeService } from '../../services/auto-mode-service.js';
+import type { AutoModeServiceFacade } from '../../services/auto-mode/index.js';
 import type { SettingsService } from '../../services/settings-service.js';
 import type { NotificationService } from '../../services/notification-service.js';
 import { createOverviewHandler } from './routes/overview.js';
@@ -13,14 +14,21 @@ export function createProjectsRoutes(
   featureLoader: FeatureLoader,
   autoModeService: AutoModeService,
   settingsService: SettingsService,
-  notificationService: NotificationService
+  notificationService: NotificationService,
+  facadeFactory?: (projectPath: string) => AutoModeServiceFacade
 ): Router {
   const router = Router();
 
   // GET /overview - Get aggregate status for all projects
   router.get(
     '/overview',
-    createOverviewHandler(featureLoader, autoModeService, settingsService, notificationService)
+    createOverviewHandler(
+      featureLoader,
+      autoModeService,
+      settingsService,
+      notificationService,
+      facadeFactory
+    )
   );
 
   return router;

apps/server/src/routes/projects/routes/overview.ts

@@ -10,6 +10,11 @@
 import type { Request, Response } from 'express';
 import type { FeatureLoader } from '../../../services/feature-loader.js';
 import type { AutoModeService } from '../../../services/auto-mode-service.js';
+import type {
+  AutoModeServiceFacade,
+  RunningAgentInfo,
+  ProjectAutoModeStatus,
+} from '../../../services/auto-mode/index.js';
 import type { SettingsService } from '../../../services/settings-service.js';
 import type { NotificationService } from '../../../services/notification-service.js';
 import type {
@@ -149,7 +154,8 @@ export function createOverviewHandler(
   featureLoader: FeatureLoader,
   autoModeService: AutoModeService,
   settingsService: SettingsService,
-  notificationService: NotificationService
+  notificationService: NotificationService,
+  facadeFactory?: (projectPath: string) => AutoModeServiceFacade
 ) {
   return async (_req: Request, res: Response): Promise<void> => {
     try {
@@ -158,7 +164,15 @@ export function createOverviewHandler(
       const projectRefs: ProjectRef[] = settings.projects || [];
 
       // Get all running agents once to count live running features per project
-      const allRunningAgents = await autoModeService.getRunningAgents();
+      // Use facade if available, otherwise fall back to autoModeService
+      let allRunningAgents: RunningAgentInfo[];
+      if (facadeFactory && projectRefs.length > 0) {
+        // For running agents, we can use any project's facade since it's a global query
+        const facade = facadeFactory(projectRefs[0].path);
+        allRunningAgents = await facade.getRunningAgents();
+      } else {
+        allRunningAgents = await autoModeService.getRunningAgents();
+      }
 
       // Collect project statuses in parallel
       const projectStatusPromises = projectRefs.map(async (projectRef): Promise<ProjectStatus> => {
@@ -169,7 +183,13 @@ export function createOverviewHandler(
           const totalFeatures = features.length;
 
           // Get auto-mode status for this project (main worktree, branchName = null)
-          const autoModeStatus = autoModeService.getStatusForProject(projectRef.path, null);
+          let autoModeStatus: ProjectAutoModeStatus;
+          if (facadeFactory) {
+            const facade = facadeFactory(projectRef.path);
+            autoModeStatus = facade.getStatusForProject(null);
+          } else {
+            autoModeStatus = autoModeService.getStatusForProject(projectRef.path, null);
+          }
           const isAutoModeRunning = autoModeStatus.isAutoLoopRunning;
 
           // Count live running features for this project (across all branches)