Update with --force flag

Merge pull request #477 from spboyer/fix/add-uv-tool-install-instructions
Add uv tool install instructions to README
2025-09-22 14:45:35 -07:00 · 2025-09-22 09:20:04 -07:00 · 2025-09-22 11:08:25 -04:00 · 2025-09-21 19:56:17 -07:00 · 2025-09-21 13:16:15 -07:00 · 2025-09-21 13:12:49 -07:00
36 changed files with 2292 additions and 493 deletions
--- a/.github/workflows/release.yml
+++ b/.github/workflows/release.yml
@@ -25,33 +25,13 @@ jobs:
      - name: Get latest tag
        id: get_tag
        run: |
-          # Get the latest tag, or use v0.0.0 if no tags exist
-          LATEST_TAG=$(git describe --tags --abbrev=0 2>/dev/null || echo "v0.0.0")
-          echo "latest_tag=$LATEST_TAG" >> $GITHUB_OUTPUT
-          
-          # Extract version number and increment
-          VERSION=$(echo $LATEST_TAG | sed 's/v//')
-          IFS='.' read -ra VERSION_PARTS <<< "$VERSION"
-          MAJOR=${VERSION_PARTS[0]:-0}
-          MINOR=${VERSION_PARTS[1]:-0}
-          PATCH=${VERSION_PARTS[2]:-0}
-          
-          # Increment patch version
-          PATCH=$((PATCH + 1))
-          NEW_VERSION="v$MAJOR.$MINOR.$PATCH"
-          
-          echo "new_version=$NEW_VERSION" >> $GITHUB_OUTPUT
-          echo "New version will be: $NEW_VERSION"
+          chmod +x .github/workflows/scripts/get-next-version.sh
+          .github/workflows/scripts/get-next-version.sh
      - name: Check if release already exists
        id: check_release
        run: |
-          if gh release view ${{ steps.get_tag.outputs.new_version }} >/dev/null 2>&1; then
-            echo "exists=true" >> $GITHUB_OUTPUT
-            echo "Release ${{ steps.get_tag.outputs.new_version }} already exists, skipping..."
-          else
-            echo "exists=false" >> $GITHUB_OUTPUT
-            echo "Release ${{ steps.get_tag.outputs.new_version }} does not exist, proceeding..."
-          fi
+          chmod +x .github/workflows/scripts/check-release-exists.sh
+          .github/workflows/scripts/check-release-exists.sh ${{ steps.get_tag.outputs.new_version }}
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
      - name: Create release package variants
@@ -63,85 +43,17 @@ jobs:
        if: steps.check_release.outputs.exists == 'false'
        id: release_notes
        run: |
-          # Get commits since last tag
-          LAST_TAG=${{ steps.get_tag.outputs.latest_tag }}
-          if [ "$LAST_TAG" = "v0.0.0" ]; then
-            # Check how many commits we have and use that as the limit
-            COMMIT_COUNT=$(git rev-list --count HEAD)
-            if [ "$COMMIT_COUNT" -gt 10 ]; then
-              COMMITS=$(git log --oneline --pretty=format:"- %s" HEAD~10..HEAD)
-            else
-              COMMITS=$(git log --oneline --pretty=format:"- %s" HEAD~$COMMIT_COUNT..HEAD 2>/dev/null || git log --oneline --pretty=format:"- %s")
-            fi
-          else
-            COMMITS=$(git log --oneline --pretty=format:"- %s" $LAST_TAG..HEAD)
-          fi
-          
-          # Create release notes
-          cat > release_notes.md << EOF
-          Template release ${{ steps.get_tag.outputs.new_version }}
-
-          Updated specification-driven development templates for GitHub Copilot, Claude Code, Gemini CLI, Cursor, Qwen, opencode, Windsurf, and Codex.
-
-          Now includes per-script variants for POSIX shell (sh) and PowerShell (ps).
-
-          Download the template for your preferred AI assistant + script type:
-          - spec-kit-template-copilot-sh-${{ steps.get_tag.outputs.new_version }}.zip
-          - spec-kit-template-copilot-ps-${{ steps.get_tag.outputs.new_version }}.zip
-          - spec-kit-template-claude-sh-${{ steps.get_tag.outputs.new_version }}.zip
-          - spec-kit-template-claude-ps-${{ steps.get_tag.outputs.new_version }}.zip
-          - spec-kit-template-gemini-sh-${{ steps.get_tag.outputs.new_version }}.zip
-          - spec-kit-template-gemini-ps-${{ steps.get_tag.outputs.new_version }}.zip
-          - spec-kit-template-cursor-sh-${{ steps.get_tag.outputs.new_version }}.zip
-          - spec-kit-template-cursor-ps-${{ steps.get_tag.outputs.new_version }}.zip
-          - spec-kit-template-opencode-sh-${{ steps.get_tag.outputs.new_version }}.zip
-          - spec-kit-template-opencode-ps-${{ steps.get_tag.outputs.new_version }}.zip
-          - spec-kit-template-qwen-sh-${{ steps.get_tag.outputs.new_version }}.zip
-          - spec-kit-template-qwen-ps-${{ steps.get_tag.outputs.new_version }}.zip
-          - spec-kit-template-windsurf-sh-${{ steps.get_tag.outputs.new_version }}.zip
-          - spec-kit-template-windsurf-ps-${{ steps.get_tag.outputs.new_version }}.zip
-          - spec-kit-template-codex-sh-${{ steps.get_tag.outputs.new_version }}.zip
-          - spec-kit-template-codex-ps-${{ steps.get_tag.outputs.new_version }}.zip
-          EOF
-          
-          echo "Generated release notes:"
-          cat release_notes.md
+          chmod +x .github/workflows/scripts/generate-release-notes.sh
+          .github/workflows/scripts/generate-release-notes.sh ${{ steps.get_tag.outputs.new_version }} ${{ steps.get_tag.outputs.latest_tag }}
      - name: Create GitHub Release
        if: steps.check_release.outputs.exists == 'false'
        run: |
-          # Remove 'v' prefix from version for release title
-          VERSION_NO_V=${{ steps.get_tag.outputs.new_version }}
-          VERSION_NO_V=${VERSION_NO_V#v}
-          
-          gh release create ${{ steps.get_tag.outputs.new_version }} \
-            spec-kit-template-copilot-sh-${{ steps.get_tag.outputs.new_version }}.zip \
-            spec-kit-template-copilot-ps-${{ steps.get_tag.outputs.new_version }}.zip \
-            spec-kit-template-claude-sh-${{ steps.get_tag.outputs.new_version }}.zip \
-            spec-kit-template-claude-ps-${{ steps.get_tag.outputs.new_version }}.zip \
-            spec-kit-template-gemini-sh-${{ steps.get_tag.outputs.new_version }}.zip \
-            spec-kit-template-gemini-ps-${{ steps.get_tag.outputs.new_version }}.zip \
-            spec-kit-template-cursor-sh-${{ steps.get_tag.outputs.new_version }}.zip \
-            spec-kit-template-cursor-ps-${{ steps.get_tag.outputs.new_version }}.zip \
-            spec-kit-template-opencode-sh-${{ steps.get_tag.outputs.new_version }}.zip \
-            spec-kit-template-opencode-ps-${{ steps.get_tag.outputs.new_version }}.zip \
-            spec-kit-template-qwen-sh-${{ steps.get_tag.outputs.new_version }}.zip \
-            spec-kit-template-qwen-ps-${{ steps.get_tag.outputs.new_version }}.zip \
-            spec-kit-template-windsurf-sh-${{ steps.get_tag.outputs.new_version }}.zip \
-            spec-kit-template-windsurf-ps-${{ steps.get_tag.outputs.new_version }}.zip \
-            spec-kit-template-codex-sh-${{ steps.get_tag.outputs.new_version }}.zip \
-            spec-kit-template-codex-ps-${{ steps.get_tag.outputs.new_version }}.zip \
-            --title "Spec Kit Templates - $VERSION_NO_V" \
-            --notes-file release_notes.md
+          chmod +x .github/workflows/scripts/create-github-release.sh
+          .github/workflows/scripts/create-github-release.sh ${{ steps.get_tag.outputs.new_version }}
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
      - name: Update version in pyproject.toml (for release artifacts only)
        if: steps.check_release.outputs.exists == 'false'
        run: |
-          # Update version in pyproject.toml (remove 'v' prefix for Python versioning)
-          VERSION=${{ steps.get_tag.outputs.new_version }}
-          PYTHON_VERSION=${VERSION#v}
-          
-          if [ -f "pyproject.toml" ]; then
-            sed -i "s/version = \".*\"/version = \"$PYTHON_VERSION\"/" pyproject.toml
-            echo "Updated pyproject.toml version to $PYTHON_VERSION (for release artifacts only)"
-          fi
+          chmod +x .github/workflows/scripts/update-version.sh
+          .github/workflows/scripts/update-version.sh ${{ steps.get_tag.outputs.new_version }}
--- a/.github/workflows/scripts/check-release-exists.sh
+++ b/.github/workflows/scripts/check-release-exists.sh
@@ -0,0 +1,21 @@
+#!/usr/bin/env bash
+set -euo pipefail
+
+# check-release-exists.sh
+# Check if a GitHub release already exists for the given version
+# Usage: check-release-exists.sh <version>
+
+if [[ $# -ne 1 ]]; then
+  echo "Usage: $0 <version>" >&2
+  exit 1
+fi
+
+VERSION="$1"
+
+if gh release view "$VERSION" >/dev/null 2>&1; then
+  echo "exists=true" >> $GITHUB_OUTPUT
+  echo "Release $VERSION already exists, skipping..."
+else
+  echo "exists=false" >> $GITHUB_OUTPUT
+  echo "Release $VERSION does not exist, proceeding..."
+fi
--- a/.github/workflows/scripts/create-github-release.sh
+++ b/.github/workflows/scripts/create-github-release.sh
@@ -0,0 +1,42 @@
+#!/usr/bin/env bash
+set -euo pipefail
+
+# create-github-release.sh
+# Create a GitHub release with all template zip files
+# Usage: create-github-release.sh <version>
+
+if [[ $# -ne 1 ]]; then
+  echo "Usage: $0 <version>" >&2
+  exit 1
+fi
+
+VERSION="$1"
+
+# Remove 'v' prefix from version for release title
+VERSION_NO_V=${VERSION#v}
+
+gh release create "$VERSION" \
+  .genreleases/spec-kit-template-copilot-sh-"$VERSION".zip \
+  .genreleases/spec-kit-template-copilot-ps-"$VERSION".zip \
+  .genreleases/spec-kit-template-claude-sh-"$VERSION".zip \
+  .genreleases/spec-kit-template-claude-ps-"$VERSION".zip \
+  .genreleases/spec-kit-template-gemini-sh-"$VERSION".zip \
+  .genreleases/spec-kit-template-gemini-ps-"$VERSION".zip \
+  .genreleases/spec-kit-template-cursor-sh-"$VERSION".zip \
+  .genreleases/spec-kit-template-cursor-ps-"$VERSION".zip \
+  .genreleases/spec-kit-template-opencode-sh-"$VERSION".zip \
+  .genreleases/spec-kit-template-opencode-ps-"$VERSION".zip \
+  .genreleases/spec-kit-template-qwen-sh-"$VERSION".zip \
+  .genreleases/spec-kit-template-qwen-ps-"$VERSION".zip \
+  .genreleases/spec-kit-template-windsurf-sh-"$VERSION".zip \
+  .genreleases/spec-kit-template-windsurf-ps-"$VERSION".zip \
+  .genreleases/spec-kit-template-codex-sh-"$VERSION".zip \
+  .genreleases/spec-kit-template-codex-ps-"$VERSION".zip \
+  .genreleases/spec-kit-template-kilocode-sh-"$VERSION".zip \
+  .genreleases/spec-kit-template-kilocode-ps-"$VERSION".zip \
+  .genreleases/spec-kit-template-auggie-sh-"$VERSION".zip \
+  .genreleases/spec-kit-template-auggie-ps-"$VERSION".zip \
+  .genreleases/spec-kit-template-roo-sh-"$VERSION".zip \
+  .genreleases/spec-kit-template-roo-ps-"$VERSION".zip \
+  --title "Spec Kit Templates - $VERSION_NO_V" \
+  --notes-file release_notes.md
--- a/.github/workflows/scripts/create-release-packages.sh
+++ b/.github/workflows/scripts/create-release-packages.sh
@@ -25,7 +25,10 @@ fi

 echo "Building release packages for $NEW_VERSION"

-rm -rf sdd-package-base* sdd-*-package-* spec-kit-template-*-"${NEW_VERSION}".zip || true
+# Create and use .genreleases directory for all build artifacts
+GENRELEASES_DIR=".genreleases"
+mkdir -p "$GENRELEASES_DIR"
+rm -rf "$GENRELEASES_DIR"/* || true

 rewrite_paths() {
  sed -E \
@@ -82,7 +85,7 @@ generate_commands() {

 build_variant() {
  local agent=$1 script=$2
-  local base_dir="sdd-${agent}-package-${script}"
+  local base_dir="$GENRELEASES_DIR/sdd-${agent}-package-${script}"
  echo "Building $agent ($script) package..."
  mkdir -p "$base_dir"
  
@@ -158,15 +161,24 @@ build_variant() {
      mkdir -p "$base_dir/.windsurf/workflows"
      generate_commands windsurf md "\$ARGUMENTS" "$base_dir/.windsurf/workflows" "$script" ;;
    codex)
-      mkdir -p "$base_dir/.codex/commands"
-      generate_commands codex md "\$ARGUMENTS" "$base_dir/.codex/commands" "$script" ;;
+      mkdir -p "$base_dir/.codex/prompts"
+      generate_commands codex md "\$ARGUMENTS" "$base_dir/.codex/prompts" "$script" ;;
+    kilocode)
+      mkdir -p "$base_dir/.kilocode/workflows"
+      generate_commands kilocode md "\$ARGUMENTS" "$base_dir/.kilocode/workflows" "$script" ;;
+    auggie)
+      mkdir -p "$base_dir/.augment/commands"
+      generate_commands auggie md "\$ARGUMENTS" "$base_dir/.augment/commands" "$script" ;;
+    roo)
+      mkdir -p "$base_dir/.roo/commands"
+      generate_commands roo md "\$ARGUMENTS" "$base_dir/.roo/commands" "$script" ;;
  esac
  ( cd "$base_dir" && zip -r "../spec-kit-template-${agent}-${script}-${NEW_VERSION}.zip" . )
-  echo "Created spec-kit-template-${agent}-${script}-${NEW_VERSION}.zip"
+  echo "Created $GENRELEASES_DIR/spec-kit-template-${agent}-${script}-${NEW_VERSION}.zip"
 }

 # Determine agent list
-ALL_AGENTS=(claude gemini copilot cursor qwen opencode windsurf codex)
+ALL_AGENTS=(claude gemini copilot cursor qwen opencode windsurf codex kilocode auggie roo)
 ALL_SCRIPTS=(sh ps)


@@ -212,5 +224,5 @@ for agent in "${AGENT_LIST[@]}"; do
  done
 done

-echo "Archives:"
-ls -1 spec-kit-template-*-"${NEW_VERSION}".zip
+echo "Archives in $GENRELEASES_DIR:"
+ls -1 "$GENRELEASES_DIR"/spec-kit-template-*-"${NEW_VERSION}".zip
--- a/.github/workflows/scripts/generate-release-notes.sh
+++ b/.github/workflows/scripts/generate-release-notes.sh
@@ -0,0 +1,36 @@
+#!/usr/bin/env bash
+set -euo pipefail
+
+# generate-release-notes.sh
+# Generate release notes from git history
+# Usage: generate-release-notes.sh <new_version> <last_tag>
+
+if [[ $# -ne 2 ]]; then
+  echo "Usage: $0 <new_version> <last_tag>" >&2
+  exit 1
+fi
+
+NEW_VERSION="$1"
+LAST_TAG="$2"
+
+# Get commits since last tag
+if [ "$LAST_TAG" = "v0.0.0" ]; then
+  # Check how many commits we have and use that as the limit
+  COMMIT_COUNT=$(git rev-list --count HEAD)
+  if [ "$COMMIT_COUNT" -gt 10 ]; then
+    COMMITS=$(git log --oneline --pretty=format:"- %s" HEAD~10..HEAD)
+  else
+    COMMITS=$(git log --oneline --pretty=format:"- %s" HEAD~$COMMIT_COUNT..HEAD 2>/dev/null || git log --oneline --pretty=format:"- %s")
+  fi
+else
+  COMMITS=$(git log --oneline --pretty=format:"- %s" $LAST_TAG..HEAD)
+fi
+
+# Create release notes
+cat > release_notes.md << EOF
+This is the latest set of releases that you can use with your agent of choice. We recommend using the Specify CLI to scaffold your projects, however you can download these independently and manage them yourself.
+
+EOF
+
+echo "Generated release notes:"
+cat release_notes.md
--- a/.github/workflows/scripts/get-next-version.sh
+++ b/.github/workflows/scripts/get-next-version.sh
@@ -0,0 +1,24 @@
+#!/usr/bin/env bash
+set -euo pipefail
+
+# get-next-version.sh
+# Calculate the next version based on the latest git tag and output GitHub Actions variables
+# Usage: get-next-version.sh
+
+# Get the latest tag, or use v0.0.0 if no tags exist
+LATEST_TAG=$(git describe --tags --abbrev=0 2>/dev/null || echo "v0.0.0")
+echo "latest_tag=$LATEST_TAG" >> $GITHUB_OUTPUT
+
+# Extract version number and increment
+VERSION=$(echo $LATEST_TAG | sed 's/v//')
+IFS='.' read -ra VERSION_PARTS <<< "$VERSION"
+MAJOR=${VERSION_PARTS[0]:-0}
+MINOR=${VERSION_PARTS[1]:-0}
+PATCH=${VERSION_PARTS[2]:-0}
+
+# Increment patch version
+PATCH=$((PATCH + 1))
+NEW_VERSION="v$MAJOR.$MINOR.$PATCH"
+
+echo "new_version=$NEW_VERSION" >> $GITHUB_OUTPUT
+echo "New version will be: $NEW_VERSION"
--- a/.github/workflows/scripts/update-version.sh
+++ b/.github/workflows/scripts/update-version.sh
@@ -0,0 +1,23 @@
+#!/usr/bin/env bash
+set -euo pipefail
+
+# update-version.sh
+# Update version in pyproject.toml (for release artifacts only)
+# Usage: update-version.sh <version>
+
+if [[ $# -ne 1 ]]; then
+  echo "Usage: $0 <version>" >&2
+  exit 1
+fi
+
+VERSION="$1"
+
+# Remove 'v' prefix for Python versioning
+PYTHON_VERSION=${VERSION#v}
+
+if [ -f "pyproject.toml" ]; then
+  sed -i "s/version = \".*\"/version = \"$PYTHON_VERSION\"/" pyproject.toml
+  echo "Updated pyproject.toml version to $PYTHON_VERSION (for release artifacts only)"
+else
+  echo "Warning: pyproject.toml not found, skipping version update"
+fi
--- a/.gitignore
+++ b/.gitignore
@@ -38,3 +38,8 @@ env/
 .env
 .env.local
 *.lock
+
+# Spec Kit-specific files
+.genreleases/
+*.zip
+sdd-*/
--- a/AGENTS.md
+++ b/AGENTS.md
@@ -59,6 +59,23 @@ AI_CHOICES = {
 }
 ```

+Also update the `agent_folder_map` in the same file to include the new agent's folder for the security notice:
+
+```python
+agent_folder_map = {
+    "claude": ".claude/",
+    "gemini": ".gemini/",
+    "cursor": ".cursor/",
+    "qwen": ".qwen/",
+    "opencode": ".opencode/",
+    "codex": ".codex/",
+    "windsurf": ".windsurf/",  # Add new agent folder here
+    "kilocode": ".kilocode/",
+    "auggie": ".auggie/",
+    "copilot": ".github/"
+}
+```
+
 #### 2. Update CLI Help Text

 Update all help text and examples to include the new agent:
@@ -67,7 +84,16 @@ Update all help text and examples to include the new agent:
 - Function docstrings and examples
 - Error messages with agent lists

-#### 3. Update Release Package Script
+#### 3. Update README Documentation
+
+Update the **Supported AI Agents** section in `README.md` to include the new agent:
+
+- Add the new agent to the table with appropriate support level (Full/Partial)
+- Include the agent's official website link
+- Add any relevant notes about the agent's implementation
+- Ensure the table formatting remains aligned and consistent
+
+#### 4. Update Release Package Script

 Modify `.github/workflows/scripts/create-release-packages.sh`:

@@ -86,7 +112,19 @@ case $agent in
 esac
 ```

-#### 4. Update Agent Context Scripts
+#### 4. Update GitHub Release Script
+
+Modify `.github/workflows/scripts/create-github-release.sh` to include the new agent's packages:
+
+```bash
+gh release create "$VERSION" \
+  # ... existing packages ...
+  .genreleases/spec-kit-template-windsurf-sh-"$VERSION".zip \
+  .genreleases/spec-kit-template-windsurf-ps-"$VERSION".zip \
+  # Add new agent packages here
+```
+
+#### 5. Update Agent Context Scripts

 ##### Bash script (`scripts/bash/update-agent-context.sh`):

@@ -132,7 +170,7 @@ switch ($AgentType) {
 }
 ```

-#### 5. Update CLI Tool Checks (Optional)
+#### 6. Update CLI Tool Checks (Optional)

 For agents that require CLI tools, add checks in the `check()` command and agent validation:

--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,10 +1,49 @@
 # Changelog

+<!-- markdownlint-disable MD024 -->
+
 All notable changes to the Specify CLI will be documented in this file.

 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

+## [0.0.16] - 2025-09-22
+
+### Added
+
+- `--force` flag for `init` command to bypass confirmation when using `--here` in a non-empty directory and proceed with merging/overwriting files.
+
+## [0.0.15] - 2025-09-21
+
+### Added
+
+- Support for Roo Code.
+
+## [0.0.14] - 2025-09-21
+
+### Changed
+
+- Error messages are now shown consistently.
+
+## [0.0.13] - 2025-09-21
+
+### Added
+
+- Support for Kilo Code. Thank you [@shahrukhkhan489](https://github.com/shahrukhkhan489) with [#394](https://github.com/github/spec-kit/pull/394).
+- Support for Auggie CLI. Thank you [@hungthai1401](https://github.com/hungthai1401) with [#137](https://github.com/github/spec-kit/pull/137).
+- Agent folder security notice displayed after project provisioning completion, warning users that some agents may store credentials or auth tokens in their agent folders and recommending adding relevant folders to `.gitignore` to prevent accidental credential leakage.
+
+### Changed
+
+- Warning displayed to ensure that folks are aware that they might need to add their agent folder to `.gitignore`.
+- Cleaned up the `check` command output.
+
+## [0.0.12] - 2025-09-21
+
+### Changed
+
+- Added additional context for OpenAI Codex users - they need to set an additional environment variable, as described in [#417](https://github.com/github/spec-kit/issues/417).
+
 ## [0.0.11] - 2025-09-20

 ### Added
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -11,7 +11,7 @@ These are one time installations required to be able to test your changes locall
 1. Install [Python 3.11+](https://www.python.org/downloads/)
 1. Install [uv](https://docs.astral.sh/uv/) for package management
 1. Install [Git](https://git-scm.com/downloads)
-1. Have an AI coding agent available: [Claude Code](https://www.anthropic.com/claude-code), [GitHub Copilot](https://code.visualstudio.com/), [Gemini CLI](https://github.com/google-gemini/gemini-cli), or [Qwen Code](https://github.com/QwenLM/qwen-code). We're working on adding support for other agents as well.
+1. Have an [AI coding agent available](README.md#-supported-ai-agents)

 ## Submitting a pull request

@@ -45,6 +45,33 @@ When working on spec-kit:
 3. Test script functionality in the `scripts/` directory
 4. Ensure memory files (`memory/constitution.md`) are updated if major process changes are made

+## AI contributions in Spec Kit
+
+We welcome and encourage the use of AI tools to help improve Spec Kit! Many valuable contributions have been enhanced with AI assistance for code generation, issue detection, and feature definition.
+
+### What we're looking for
+
+When submitting AI-assisted contributions, please ensure they include:
+
+- **Human understanding and testing** - You've personally tested the changes and understand what they do
+- **Clear rationale** - You can explain why the change is needed and how it fits within Spec Kit's goals  
+- **Concrete evidence** - Include test cases, scenarios, or examples that demonstrate the improvement
+- **Your own analysis** - Share your thoughts on the end-to-end developer experience
+
+### What we'll close
+
+We reserve the right to close contributions that appear to be:
+
+- Untested changes submitted without verification
+- Generic suggestions that don't address specific Spec Kit needs
+- Bulk submissions that show no human review or understanding
+
+### Guidelines for success
+
+The key is demonstrating that you understand and have validated your proposed changes. If a maintainer can easily tell that a contribution was generated entirely by AI without human input or testing, it likely needs more work before submission.
+
+Contributors who consistently submit low-effort AI-generated changes may be restricted from further contributions at the maintainers' discretion.
+
 ## Resources

 - [Spec-Driven Development Methodology](./spec-driven.md)
--- a/README.md
+++ b/README.md
@@ -17,6 +17,7 @@
 - [🤔 What is Spec-Driven Development?](#-what-is-spec-driven-development)
 - [⚡ Get started](#-get-started)
 - [📽️ Video Overview](#️-video-overview)
+- [🤖 Supported AI Agents](#-supported-ai-agents)
 - [🔧 Specify CLI Reference](#-specify-cli-reference)
 - [📚 Core philosophy](#-core-philosophy)
 - [🌟 Development phases](#-development-phases)
@@ -38,12 +39,38 @@ Spec-Driven Development **flips the script** on traditional software development

 ### 1. Install Specify

-Initialize your project depending on the coding agent you're using:
+Choose your preferred installation method:
+
+#### Option 1: Persistent Installation (Recommended)
+
+Install once and use everywhere:
+
+```bash
+uv tool install specify-cli --from git+https://github.com/github/spec-kit.git
+```
+
+Then use the tool directly:
+
+```bash
+specify init <PROJECT_NAME>
+specify check
+```
+
+#### Option 2: One-time Usage
+
+Run directly without installing:

 ```bash
 uvx --from git+https://github.com/github/spec-kit.git specify init <PROJECT_NAME>
 ```

+**Benefits of persistent installation:**
+
+- Tool stays installed and available in PATH
+- No need to create shell aliases
+- Better tool management with `uv tool list`, `uv tool upgrade`, `uv tool uninstall`
+- Cleaner shell configuration
+
 ### 2. Establish project principles

 Use the **`/constitution`** command to create your project's governing principles and development guidelines that will guide all subsequent development.
@@ -92,6 +119,22 @@ Want to see Spec Kit in action? Watch our [video overview](https://www.youtube.c

 [![Spec Kit video header](/media/spec-kit-video-header.jpg)](https://www.youtube.com/watch?v=a9eR1xsfvHg&pp=0gcJCckJAYcqIYzv)

+## 🤖 Supported AI Agents
+
+| Agent                                                     | Support | Notes                                             |
+|-----------------------------------------------------------|---------|---------------------------------------------------|
+| [Claude Code](https://www.anthropic.com/claude-code)      | ✅ |                                                   |
+| [GitHub Copilot](https://code.visualstudio.com/)          | ✅ |                                                   |
+| [Gemini CLI](https://github.com/google-gemini/gemini-cli) | ✅ |                                                   |
+| [Cursor](https://cursor.sh/)                              | ✅ |                                                   |
+| [Qwen Code](https://github.com/QwenLM/qwen-code)          | ✅ |                                                   |
+| [opencode](https://opencode.ai/)                          | ✅ |                                                   |
+| [Windsurf](https://windsurf.com/)                         | ✅ |                                                   |
+| [Kilo Code](https://github.com/Kilo-Org/kilocode)         | ✅ |                                                   |
+| [Auggie CLI](https://docs.augmentcode.com/cli/overview)   | ✅ |                                                   |
+| [Roo Code](https://roocode.com/)                          | ✅ |                                                   |
+| [Codex CLI](https://github.com/openai/codex)              | ⚠️ | Codex [does not support](https://github.com/openai/codex/issues/2890) custom arguments for slash commands.  |
+
 ## 🔧 Specify CLI Reference

 The `specify` command supports the following options:
@@ -101,18 +144,19 @@ The `specify` command supports the following options:
 | Command     | Description                                                    |
 |-------------|----------------------------------------------------------------|
 | `init`      | Initialize a new Specify project from the latest template      |
-| `check`     | Check for installed tools (`git`, `claude`, `gemini`, `code`/`code-insiders`, `cursor-agent`, `windsurf`, `qwen`, `opencode`) |
+| `check`     | Check for installed tools (`git`, `claude`, `gemini`, `code`/`code-insiders`, `cursor-agent`, `windsurf`, `qwen`, `opencode`, `codex`) |

 ### `specify init` Arguments & Options

 | Argument/Option        | Type     | Description                                                                  |
 |------------------------|----------|------------------------------------------------------------------------------|
 | `<project-name>`       | Argument | Name for your new project directory (optional if using `--here`)            |
-| `--ai`                 | Option   | AI assistant to use: `claude`, `gemini`, `copilot`, `cursor`, `qwen`, `opencode`, or `windsurf` |
+| `--ai`                 | Option   | AI assistant to use: `claude`, `gemini`, `copilot`, `cursor`, `qwen`, `opencode`, `codex`, `windsurf`, `kilocode`, `auggie`, or `roo` |
 | `--script`             | Option   | Script variant to use: `sh` (bash/zsh) or `ps` (PowerShell)                 |
 | `--ignore-agent-tools` | Flag     | Skip checks for AI agent tools like Claude Code                             |
 | `--no-git`             | Flag     | Skip git repository initialization                                          |
 | `--here`               | Flag     | Initialize project in the current directory instead of creating a new one   |
+| `--force`              | Flag     | Force merge/overwrite when using `--here` in a non-empty directory (skip confirmation) |
 | `--skip-tls`           | Flag     | Skip SSL/TLS verification (not recommended)                                 |
 | `--debug`              | Flag     | Enable detailed debug output for troubleshooting                            |
 | `--github-token`       | Option   | GitHub token for API requests (or set GH_TOKEN/GITHUB_TOKEN env variable)  |
@@ -138,6 +182,9 @@ specify init my-project --ai copilot --script ps
 # Initialize in current directory
 specify init --here --ai copilot

+# Force merge into current (non-empty) directory without confirmation
+specify init --here --force --ai copilot
+
 # Skip git initialization
 specify init my-project --ai gemini --no-git

@@ -163,6 +210,12 @@ After running `specify init`, your AI coding agent will have access to these sla
 | `/tasks`        | Generate actionable task lists for implementation                     |
 | `/implement`    | Execute all tasks to build the feature according to the plan         |

+### Environment Variables
+
+| Variable         | Description                                                                                    |
+|------------------|------------------------------------------------------------------------------------------------|
+| `SPECIFY_FEATURE` | Override feature detection for non-Git repositories. Set to the feature directory name (e.g., `001-photo-albums`) to work on a specific feature when not using Git branches.<br/>**Must be set in the context of the agent you're working with prior to using `/plan` or follow-up commands. |
+
 ## 📚 Core philosophy

 Spec-Driven Development is a structured process that emphasizes:
@@ -214,6 +267,8 @@ Our research and experimentation focus on:
 - [Python 3.11+](https://www.python.org/downloads/)
 - [Git](https://git-scm.com/downloads)

+If you encounter issues with an agent, please open an issue so we can refine the integration.
+
 ## 📖 Learn more

 - **[Complete Spec-Driven Development Methodology](./spec-driven.md)** - Deep dive into the full process
@@ -236,6 +291,8 @@ Or initialize in the current directory:

 ```bash
 specify init --here
+# Skip confirmation when the directory already has files
+specify init --here --force
 ```

 ![Specify CLI bootstrapping a new project in the terminal](./media/specify_cli.gif)
@@ -254,6 +311,8 @@ specify init <project_name> --ai windsurf
 # Or in current directory:
 specify init --here --ai claude
 specify init --here --ai codex
+# Force merge into a non-empty current directory
+specify init --here --force --ai claude
 ```

 The CLI will check if you have Claude Code, Gemini CLI, Cursor CLI, Qwen CLI, opencode, or Codex CLI installed. If you do not, or you prefer to get the templates without checking for the right tools, use `--ignore-agent-tools` with your command:
@@ -319,10 +378,9 @@ At this stage, your project folder contents should resemble the following:
 │	 ├── constitution.md
 │	 └── constitution_update_checklist.md
 ├── scripts
-│	 ├── check-task-prerequisites.sh
+│	 ├── check-prerequisites.sh
 │	 ├── common.sh
 │	 ├── create-new-feature.sh
-│	 ├── get-feature-paths.sh
 │	 ├── setup-plan.sh
 │	 └── update-claude-md.sh
 ├── specs
@@ -371,10 +429,9 @@ The output of this step will include a number of implementation detail documents
 │	 ├── constitution.md
 │	 └── constitution_update_checklist.md
 ├── scripts
-│	 ├── check-task-prerequisites.sh
+│	 ├── check-prerequisites.sh
 │	 ├── common.sh
 │	 ├── create-new-feature.sh
-│	 ├── get-feature-paths.sh
 │	 ├── setup-plan.sh
 │	 └── update-claude-md.sh
 ├── specs
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "specify-cli"
-version = "0.0.10"
+version = "0.0.16"
 description = "Specify CLI, part of GitHub Spec Kit. A tool to bootstrap your projects for Spec-Driven Development (SDD)."
 requires-python = ">=3.11"
 dependencies = [
--- a/scripts/bash/check-implementation-prerequisites.sh
+++ b/scripts/bash/check-implementation-prerequisites.sh
@@ -1,16 +0,0 @@
-#!/usr/bin/env bash
-set -e
-JSON_MODE=false
-for arg in "$@"; do case "$arg" in --json) JSON_MODE=true ;; --help|-h) echo "Usage: $0 [--json]"; exit 0 ;; esac; done
-SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
-source "$SCRIPT_DIR/common.sh"
-eval $(get_feature_paths)
-check_feature_branch "$CURRENT_BRANCH" || exit 1
-if [[ ! -d "$FEATURE_DIR" ]]; then echo "ERROR: Feature directory not found: $FEATURE_DIR"; echo "Run /specify first."; exit 1; fi
-if [[ ! -f "$IMPL_PLAN" ]]; then echo "ERROR: plan.md not found in $FEATURE_DIR"; echo "Run /plan first."; exit 1; fi
-if [[ ! -f "$TASKS" ]]; then echo "ERROR: tasks.md not found in $FEATURE_DIR"; echo "Run /tasks first."; exit 1; fi
-if $JSON_MODE; then
-  docs=(); [[ -f "$RESEARCH" ]] && docs+=("research.md"); [[ -f "$DATA_MODEL" ]] && docs+=("data-model.md"); ([[ -d "$CONTRACTS_DIR" ]] && [[ -n "$(ls -A "$CONTRACTS_DIR" 2>/dev/null)" ]]) && docs+=("contracts/"); [[ -f "$QUICKSTART" ]] && docs+=("quickstart.md"); [[ -f "$TASKS" ]] && docs+=("tasks.md");
-  json_docs=$(printf '"%s",' "${docs[@]}"); json_docs="[${json_docs%,}]"; printf '{"FEATURE_DIR":"%s","AVAILABLE_DOCS":%s}\n' "$FEATURE_DIR" "$json_docs"
-else
-  echo "FEATURE_DIR:$FEATURE_DIR"; echo "AVAILABLE_DOCS:"; check_file "$RESEARCH" "research.md"; check_file "$DATA_MODEL" "data-model.md"; check_dir "$CONTRACTS_DIR" "contracts/"; check_file "$QUICKSTART" "quickstart.md"; check_file "$TASKS" "tasks.md"; fi
--- a/scripts/bash/check-prerequisites.sh
+++ b/scripts/bash/check-prerequisites.sh
@@ -0,0 +1,160 @@
+#!/usr/bin/env bash
+
+# Consolidated prerequisite checking script
+#
+# This script provides unified prerequisite checking for Spec-Driven Development workflow.
+# It replaces the functionality previously spread across multiple scripts.
+#
+# Usage: ./check-prerequisites.sh [OPTIONS]
+#
+# OPTIONS:
+#   --json              Output in JSON format
+#   --require-tasks     Require tasks.md to exist (for implementation phase)
+#   --include-tasks     Include tasks.md in AVAILABLE_DOCS list
+#   --paths-only        Only output path variables (no validation)
+#   --help, -h          Show help message
+#
+# OUTPUTS:
+#   JSON mode: {"FEATURE_DIR":"...", "AVAILABLE_DOCS":["..."]}
+#   Text mode: FEATURE_DIR:... \n AVAILABLE_DOCS: \n ✓/✗ file.md
+#   Paths only: REPO_ROOT: ... \n BRANCH: ... \n FEATURE_DIR: ... etc.
+
+set -e
+
+# Parse command line arguments
+JSON_MODE=false
+REQUIRE_TASKS=false
+INCLUDE_TASKS=false
+PATHS_ONLY=false
+
+for arg in "$@"; do
+    case "$arg" in
+        --json)
+            JSON_MODE=true
+            ;;
+        --require-tasks)
+            REQUIRE_TASKS=true
+            ;;
+        --include-tasks)
+            INCLUDE_TASKS=true
+            ;;
+        --paths-only)
+            PATHS_ONLY=true
+            ;;
+        --help|-h)
+            cat << 'EOF'
+Usage: check-prerequisites.sh [OPTIONS]
+
+Consolidated prerequisite checking for Spec-Driven Development workflow.
+
+OPTIONS:
+  --json              Output in JSON format
+  --require-tasks     Require tasks.md to exist (for implementation phase)
+  --include-tasks     Include tasks.md in AVAILABLE_DOCS list
+  --paths-only        Only output path variables (no prerequisite validation)
+  --help, -h          Show this help message
+
+EXAMPLES:
+  # Check task prerequisites (plan.md required)
+  ./check-prerequisites.sh --json
+  
+  # Check implementation prerequisites (plan.md + tasks.md required)
+  ./check-prerequisites.sh --json --require-tasks --include-tasks
+  
+  # Get feature paths only (no validation)
+  ./check-prerequisites.sh --paths-only
+  
+EOF
+            exit 0
+            ;;
+        *)
+            echo "ERROR: Unknown option '$arg'. Use --help for usage information." >&2
+            exit 1
+            ;;
+    esac
+done
+
+# Source common functions
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+source "$SCRIPT_DIR/common.sh"
+
+# Get feature paths and validate branch
+eval $(get_feature_paths)
+check_feature_branch "$CURRENT_BRANCH" "$HAS_GIT" || exit 1
+
+# If paths-only mode, output paths and exit
+if $PATHS_ONLY; then
+    echo "REPO_ROOT: $REPO_ROOT"
+    echo "BRANCH: $CURRENT_BRANCH"
+    echo "FEATURE_DIR: $FEATURE_DIR"
+    echo "FEATURE_SPEC: $FEATURE_SPEC"
+    echo "IMPL_PLAN: $IMPL_PLAN"
+    echo "TASKS: $TASKS"
+    exit 0
+fi
+
+# Validate required directories and files
+if [[ ! -d "$FEATURE_DIR" ]]; then
+    echo "ERROR: Feature directory not found: $FEATURE_DIR" >&2
+    echo "Run /specify first to create the feature structure." >&2
+    exit 1
+fi
+
+if [[ ! -f "$IMPL_PLAN" ]]; then
+    echo "ERROR: plan.md not found in $FEATURE_DIR" >&2
+    echo "Run /plan first to create the implementation plan." >&2
+    exit 1
+fi
+
+# Check for tasks.md if required
+if $REQUIRE_TASKS && [[ ! -f "$TASKS" ]]; then
+    echo "ERROR: tasks.md not found in $FEATURE_DIR" >&2
+    echo "Run /tasks first to create the task list." >&2
+    exit 1
+fi
+
+# Build list of available documents
+docs=()
+
+# Always check these optional docs
+[[ -f "$RESEARCH" ]] && docs+=("research.md")
+[[ -f "$DATA_MODEL" ]] && docs+=("data-model.md")
+
+# Check contracts directory (only if it exists and has files)
+if [[ -d "$CONTRACTS_DIR" ]] && [[ -n "$(ls -A "$CONTRACTS_DIR" 2>/dev/null)" ]]; then
+    docs+=("contracts/")
+fi
+
+[[ -f "$QUICKSTART" ]] && docs+=("quickstart.md")
+
+# Include tasks.md if requested and it exists
+if $INCLUDE_TASKS && [[ -f "$TASKS" ]]; then
+    docs+=("tasks.md")
+fi
+
+# Output results
+if $JSON_MODE; then
+    # Build JSON array of documents
+    if [[ ${#docs[@]} -eq 0 ]]; then
+        json_docs="[]"
+    else
+        json_docs=$(printf '"%s",' "${docs[@]}")
+        json_docs="[${json_docs%,}]"
+    fi
+    
+    printf '{"FEATURE_DIR":"%s","AVAILABLE_DOCS":%s}\n' "$FEATURE_DIR" "$json_docs"
+else
+    # Text output
+    echo "FEATURE_DIR:$FEATURE_DIR"
+    echo "AVAILABLE_DOCS:"
+    
+    # Show status of each potential document
+    check_file "$RESEARCH" "research.md"
+    check_file "$DATA_MODEL" "data-model.md"
+    check_dir "$CONTRACTS_DIR" "contracts/"
+    check_file "$QUICKSTART" "quickstart.md"
+    
+    if $INCLUDE_TASKS; then
+        check_file "$TASKS" "tasks.md"
+    fi
+fi
--- a/scripts/bash/check-task-prerequisites.sh
+++ b/scripts/bash/check-task-prerequisites.sh
@@ -1,15 +0,0 @@
-#!/usr/bin/env bash
-set -e
-JSON_MODE=false
-for arg in "$@"; do case "$arg" in --json) JSON_MODE=true ;; --help|-h) echo "Usage: $0 [--json]"; exit 0 ;; esac; done
-SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
-source "$SCRIPT_DIR/common.sh"
-eval $(get_feature_paths)
-check_feature_branch "$CURRENT_BRANCH" || exit 1
-if [[ ! -d "$FEATURE_DIR" ]]; then echo "ERROR: Feature directory not found: $FEATURE_DIR"; echo "Run /specify first."; exit 1; fi
-if [[ ! -f "$IMPL_PLAN" ]]; then echo "ERROR: plan.md not found in $FEATURE_DIR"; echo "Run /plan first."; exit 1; fi
-if $JSON_MODE; then
-  docs=(); [[ -f "$RESEARCH" ]] && docs+=("research.md"); [[ -f "$DATA_MODEL" ]] && docs+=("data-model.md"); ([[ -d "$CONTRACTS_DIR" ]] && [[ -n "$(ls -A "$CONTRACTS_DIR" 2>/dev/null)" ]]) && docs+=("contracts/"); [[ -f "$QUICKSTART" ]] && docs+=("quickstart.md");
-  json_docs=$(printf '"%s",' "${docs[@]}"); json_docs="[${json_docs%,}]"; printf '{"FEATURE_DIR":"%s","AVAILABLE_DOCS":%s}\n' "$FEATURE_DIR" "$json_docs"
-else
-  echo "FEATURE_DIR:$FEATURE_DIR"; echo "AVAILABLE_DOCS:"; check_file "$RESEARCH" "research.md"; check_file "$DATA_MODEL" "data-model.md"; check_dir "$CONTRACTS_DIR" "contracts/"; check_file "$QUICKSTART" "quickstart.md"; fi
--- a/scripts/bash/common.sh
+++ b/scripts/bash/common.sh
@@ -1,16 +1,84 @@
 #!/usr/bin/env bash
-# (Moved to scripts/bash/) Common functions and variables for all scripts
+# Common functions and variables for all scripts

-get_repo_root() { git rev-parse --show-toplevel; }
-get_current_branch() { git rev-parse --abbrev-ref HEAD; }
+# Get repository root, with fallback for non-git repositories
+get_repo_root() {
+    if git rev-parse --show-toplevel >/dev/null 2>&1; then
+        git rev-parse --show-toplevel
+    else
+        # Fall back to script location for non-git repos
+        local script_dir="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+        (cd "$script_dir/../../.." && pwd)
+    fi
+}
+
+# Get current branch, with fallback for non-git repositories
+get_current_branch() {
+    # First check if SPECIFY_FEATURE environment variable is set
+    if [[ -n "${SPECIFY_FEATURE:-}" ]]; then
+        echo "$SPECIFY_FEATURE"
+        return
+    fi
+    
+    # Then check git if available
+    if git rev-parse --abbrev-ref HEAD >/dev/null 2>&1; then
+        git rev-parse --abbrev-ref HEAD
+        return
+    fi
+    
+    # For non-git repos, try to find the latest feature directory
+    local repo_root=$(get_repo_root)
+    local specs_dir="$repo_root/specs"
+    
+    if [[ -d "$specs_dir" ]]; then
+        local latest_feature=""
+        local highest=0
+        
+        for dir in "$specs_dir"/*; do
+            if [[ -d "$dir" ]]; then
+                local dirname=$(basename "$dir")
+                if [[ "$dirname" =~ ^([0-9]{3})- ]]; then
+                    local number=${BASH_REMATCH[1]}
+                    number=$((10#$number))
+                    if [[ "$number" -gt "$highest" ]]; then
+                        highest=$number
+                        latest_feature=$dirname
+                    fi
+                fi
+            fi
+        done
+        
+        if [[ -n "$latest_feature" ]]; then
+            echo "$latest_feature"
+            return
+        fi
+    fi
+    
+    echo "main"  # Final fallback
+}
+
+# Check if we have git available
+has_git() {
+    git rev-parse --show-toplevel >/dev/null 2>&1
+}

 check_feature_branch() {
    local branch="$1"
+    local has_git_repo="$2"
+    
+    # For non-git repos, we can't enforce branch naming but still provide output
+    if [[ "$has_git_repo" != "true" ]]; then
+        echo "[specify] Warning: Git repository not detected; skipped branch validation" >&2
+        return 0
+    fi
+    
    if [[ ! "$branch" =~ ^[0-9]{3}- ]]; then
        echo "ERROR: Not on a feature branch. Current branch: $branch" >&2
        echo "Feature branches should be named like: 001-feature-name" >&2
        return 1
-    fi; return 0
+    fi
+    
+    return 0
 }

 get_feature_dir() { echo "$1/specs/$2"; }
@@ -18,10 +86,18 @@ get_feature_dir() { echo "$1/specs/$2"; }
 get_feature_paths() {
    local repo_root=$(get_repo_root)
    local current_branch=$(get_current_branch)
+    local has_git_repo="false"
+    
+    if has_git; then
+        has_git_repo="true"
+    fi
+    
    local feature_dir=$(get_feature_dir "$repo_root" "$current_branch")
+    
    cat <<EOF
 REPO_ROOT='$repo_root'
 CURRENT_BRANCH='$current_branch'
+HAS_GIT='$has_git_repo'
 FEATURE_DIR='$feature_dir'
 FEATURE_SPEC='$feature_dir/spec.md'
 IMPL_PLAN='$feature_dir/plan.md'
--- a/scripts/bash/create-new-feature.sh
+++ b/scripts/bash/create-new-feature.sh
@@ -1,5 +1,5 @@
 #!/usr/bin/env bash
-# (Moved to scripts/bash/) Create a new feature with branch, directory structure, and template
+
 set -e

 JSON_MODE=false
@@ -18,16 +18,33 @@ if [ -z "$FEATURE_DESCRIPTION" ]; then
    exit 1
 fi

+# Function to find the repository root by searching for existing project markers
+find_repo_root() {
+    local dir="$1"
+    while [ "$dir" != "/" ]; do
+        if [ -d "$dir/.git" ] || [ -d "$dir/.specify" ]; then
+            echo "$dir"
+            return 0
+        fi
+        dir="$(dirname "$dir")"
+    done
+    return 1
+}
+
 # Resolve repository root. Prefer git information when available, but fall back
-# to the script location so the workflow still functions in repositories that
+# to searching for repository markers so the workflow still functions in repositories that
 # were initialised with --no-git.
 SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
-FALLBACK_ROOT="$(cd "$SCRIPT_DIR/../.." && pwd)"
+
 if git rev-parse --show-toplevel >/dev/null 2>&1; then
    REPO_ROOT=$(git rev-parse --show-toplevel)
    HAS_GIT=true
 else
-    REPO_ROOT="$FALLBACK_ROOT"
+    REPO_ROOT="$(find_repo_root "$SCRIPT_DIR")"
+    if [ -z "$REPO_ROOT" ]; then
+        echo "Error: Could not determine repository root. Please run this script from within the repository." >&2
+        exit 1
+    fi
    HAS_GIT=false
 fi

@@ -67,10 +84,14 @@ TEMPLATE="$REPO_ROOT/templates/spec-template.md"
 SPEC_FILE="$FEATURE_DIR/spec.md"
 if [ -f "$TEMPLATE" ]; then cp "$TEMPLATE" "$SPEC_FILE"; else touch "$SPEC_FILE"; fi

+# Set the SPECIFY_FEATURE environment variable for the current session
+export SPECIFY_FEATURE="$BRANCH_NAME"
+
 if $JSON_MODE; then
    printf '{"BRANCH_NAME":"%s","SPEC_FILE":"%s","FEATURE_NUM":"%s"}\n' "$BRANCH_NAME" "$SPEC_FILE" "$FEATURE_NUM"
 else
    echo "BRANCH_NAME: $BRANCH_NAME"
    echo "SPEC_FILE: $SPEC_FILE"
    echo "FEATURE_NUM: $FEATURE_NUM"
+    echo "SPECIFY_FEATURE environment variable set to: $BRANCH_NAME"
 fi
--- a/scripts/bash/get-feature-paths.sh
+++ b/scripts/bash/get-feature-paths.sh
@@ -1,7 +0,0 @@
-#!/usr/bin/env bash
-set -e
-SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
-source "$SCRIPT_DIR/common.sh"
-eval $(get_feature_paths)
-check_feature_branch "$CURRENT_BRANCH" || exit 1
-echo "REPO_ROOT: $REPO_ROOT"; echo "BRANCH: $CURRENT_BRANCH"; echo "FEATURE_DIR: $FEATURE_DIR"; echo "FEATURE_SPEC: $FEATURE_SPEC"; echo "IMPL_PLAN: $IMPL_PLAN"; echo "TASKS: $TASKS"
--- a/scripts/bash/setup-plan.sh
+++ b/scripts/bash/setup-plan.sh
@@ -1,17 +1,60 @@
 #!/usr/bin/env bash
+
 set -e
+
+# Parse command line arguments
 JSON_MODE=false
-for arg in "$@"; do case "$arg" in --json) JSON_MODE=true ;; --help|-h) echo "Usage: $0 [--json]"; exit 0 ;; esac; done
+ARGS=()
+
+for arg in "$@"; do
+    case "$arg" in
+        --json) 
+            JSON_MODE=true 
+            ;;
+        --help|-h) 
+            echo "Usage: $0 [--json]"
+            echo "  --json    Output results in JSON format"
+            echo "  --help    Show this help message"
+            exit 0 
+            ;;
+        *) 
+            ARGS+=("$arg") 
+            ;;
+    esac
+done
+
+# Get script directory and load common functions
 SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
 source "$SCRIPT_DIR/common.sh"
+
+# Get all paths and variables from common functions
 eval $(get_feature_paths)
-check_feature_branch "$CURRENT_BRANCH" || exit 1
+
+# Check if we're on a proper feature branch (only for git repos)
+check_feature_branch "$CURRENT_BRANCH" "$HAS_GIT" || exit 1
+
+# Ensure the feature directory exists
 mkdir -p "$FEATURE_DIR"
+
+# Copy plan template if it exists
 TEMPLATE="$REPO_ROOT/.specify/templates/plan-template.md"
-[[ -f "$TEMPLATE" ]] && cp "$TEMPLATE" "$IMPL_PLAN"
-if $JSON_MODE; then
-  printf '{"FEATURE_SPEC":"%s","IMPL_PLAN":"%s","SPECS_DIR":"%s","BRANCH":"%s"}\n' \
-    "$FEATURE_SPEC" "$IMPL_PLAN" "$FEATURE_DIR" "$CURRENT_BRANCH"
+if [[ -f "$TEMPLATE" ]]; then
+    cp "$TEMPLATE" "$IMPL_PLAN"
+    echo "Copied plan template to $IMPL_PLAN"
 else
-  echo "FEATURE_SPEC: $FEATURE_SPEC"; echo "IMPL_PLAN: $IMPL_PLAN"; echo "SPECS_DIR: $FEATURE_DIR"; echo "BRANCH: $CURRENT_BRANCH"
+    echo "Warning: Plan template not found at $TEMPLATE"
+    # Create a basic plan file if template doesn't exist
+    touch "$IMPL_PLAN"
+fi
+
+# Output results
+if $JSON_MODE; then
+    printf '{"FEATURE_SPEC":"%s","IMPL_PLAN":"%s","SPECS_DIR":"%s","BRANCH":"%s","HAS_GIT":"%s"}\n' \
+        "$FEATURE_SPEC" "$IMPL_PLAN" "$FEATURE_DIR" "$CURRENT_BRANCH" "$HAS_GIT"
+else
+    echo "FEATURE_SPEC: $FEATURE_SPEC"
+    echo "IMPL_PLAN: $IMPL_PLAN" 
+    echo "SPECS_DIR: $FEATURE_DIR"
+    echo "BRANCH: $CURRENT_BRANCH"
+    echo "HAS_GIT: $HAS_GIT"
 fi
--- a/scripts/bash/update-agent-context.sh
+++ b/scripts/bash/update-agent-context.sh
@@ -1,69 +1,719 @@
 #!/usr/bin/env bash
+
+# Update agent context files with information from plan.md
+#
+# This script maintains AI agent context files by parsing feature specifications 
+# and updating agent-specific configuration files with project information.
+#
+# MAIN FUNCTIONS:
+# 1. Environment Validation
+#    - Verifies git repository structure and branch information
+#    - Checks for required plan.md files and templates
+#    - Validates file permissions and accessibility
+#
+# 2. Plan Data Extraction
+#    - Parses plan.md files to extract project metadata
+#    - Identifies language/version, frameworks, databases, and project types
+#    - Handles missing or incomplete specification data gracefully
+#
+# 3. Agent File Management
+#    - Creates new agent context files from templates when needed
+#    - Updates existing agent files with new project information
+#    - Preserves manual additions and custom configurations
+#    - Supports multiple AI agent formats and directory structures
+#
+# 4. Content Generation
+#    - Generates language-specific build/test commands
+#    - Creates appropriate project directory structures
+#    - Updates technology stacks and recent changes sections
+#    - Maintains consistent formatting and timestamps
+#
+# 5. Multi-Agent Support
+#    - Handles agent-specific file paths and naming conventions
+#    - Supports: Claude, Gemini, Copilot, Cursor, Qwen, opencode, Codex, Windsurf
+#    - Can update single agents or all existing agent files
+#    - Creates default Claude file if no agent files exist
+#
+# Usage: ./update-agent-context.sh [agent_type]
+# Agent types: claude|gemini|copilot|cursor|qwen|opencode|codex|windsurf
+# Leave empty to update all existing agent files
+
 set -e
-REPO_ROOT=$(git rev-parse --show-toplevel)
-CURRENT_BRANCH=$(git rev-parse --abbrev-ref HEAD)
-FEATURE_DIR="$REPO_ROOT/specs/$CURRENT_BRANCH"
-NEW_PLAN="$FEATURE_DIR/plan.md"
-CLAUDE_FILE="$REPO_ROOT/CLAUDE.md"; GEMINI_FILE="$REPO_ROOT/GEMINI.md"; COPILOT_FILE="$REPO_ROOT/.github/copilot-instructions.md"; CURSOR_FILE="$REPO_ROOT/.cursor/rules/specify-rules.mdc"; QWEN_FILE="$REPO_ROOT/QWEN.md"; AGENTS_FILE="$REPO_ROOT/AGENTS.md"; WINDSURF_FILE="$REPO_ROOT/.windsurf/rules/specify-rules.md"
-AGENT_TYPE="$1"
-[ -f "$NEW_PLAN" ] || { echo "ERROR: No plan.md found at $NEW_PLAN"; exit 1; }
-echo "=== Updating agent context files for feature $CURRENT_BRANCH ==="
-NEW_LANG=$(grep "^**Language/Version**: " "$NEW_PLAN" 2>/dev/null | head -1 | sed 's/^**Language\/Version**: //' | grep -v "NEEDS CLARIFICATION" || echo "")
-NEW_FRAMEWORK=$(grep "^**Primary Dependencies**: " "$NEW_PLAN" 2>/dev/null | head -1 | sed 's/^**Primary Dependencies**: //' | grep -v "NEEDS CLARIFICATION" || echo "")
-NEW_DB=$(grep "^**Storage**: " "$NEW_PLAN" 2>/dev/null | head -1 | sed 's/^**Storage**: //' | grep -v "N/A" | grep -v "NEEDS CLARIFICATION" || echo "")
-NEW_PROJECT_TYPE=$(grep "^**Project Type**: " "$NEW_PLAN" 2>/dev/null | head -1 | sed 's/^**Project Type**: //' || echo "")
-update_agent_file() { local target_file="$1" agent_name="$2"; echo "Updating $agent_name context file: $target_file"; local temp_file=$(mktemp); if [ ! -f "$target_file" ]; then
-  echo "Creating new $agent_name context file..."; if [ -f "$REPO_ROOT/.specify/templates/agent-file-template.md" ]; then cp "$REPO_ROOT/.specify/templates/agent-file-template.md" "$temp_file"; else echo "ERROR: Template not found"; return 1; fi;
-  sed -i.bak "s/\[PROJECT NAME\]/$(basename $REPO_ROOT)/" "$temp_file"; sed -i.bak "s/\[DATE\]/$(date +%Y-%m-%d)/" "$temp_file"; sed -i.bak "s/\[EXTRACTED FROM ALL PLAN.MD FILES\]/- $NEW_LANG + $NEW_FRAMEWORK ($CURRENT_BRANCH)/" "$temp_file";
-  if [[ "$NEW_PROJECT_TYPE" == *"web"* ]]; then sed -i.bak "s|\[ACTUAL STRUCTURE FROM PLANS\]|backend/\nfrontend/\ntests/|" "$temp_file"; else sed -i.bak "s|\[ACTUAL STRUCTURE FROM PLANS\]|src/\ntests/|" "$temp_file"; fi;
-  if [[ "$NEW_LANG" == *"Python"* ]]; then COMMANDS="cd src && pytest && ruff check ."; elif [[ "$NEW_LANG" == *"Rust"* ]]; then COMMANDS="cargo test && cargo clippy"; elif [[ "$NEW_LANG" == *"JavaScript"* ]] || [[ "$NEW_LANG" == *"TypeScript"* ]]; then COMMANDS="npm test && npm run lint"; else COMMANDS="# Add commands for $NEW_LANG"; fi; sed -i.bak "s|\[ONLY COMMANDS FOR ACTIVE TECHNOLOGIES\]|$COMMANDS|" "$temp_file";
-  sed -i.bak "s|\[LANGUAGE-SPECIFIC, ONLY FOR LANGUAGES IN USE\]|$NEW_LANG: Follow standard conventions|" "$temp_file"; sed -i.bak "s|\[LAST 3 FEATURES AND WHAT THEY ADDED\]|- $CURRENT_BRANCH: Added $NEW_LANG + $NEW_FRAMEWORK|" "$temp_file"; rm "$temp_file.bak";
+
+# Enable strict error handling
+set -u
+set -o pipefail
+
+#==============================================================================
+# Configuration and Global Variables
+#==============================================================================
+
+# Get script directory and load common functions
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+source "$SCRIPT_DIR/common.sh"
+
+# Get all paths and variables from common functions
+eval $(get_feature_paths)
+
+NEW_PLAN="$IMPL_PLAN"  # Alias for compatibility with existing code
+AGENT_TYPE="${1:-}"
+
+# Agent-specific file paths  
+CLAUDE_FILE="$REPO_ROOT/CLAUDE.md"
+GEMINI_FILE="$REPO_ROOT/GEMINI.md"
+COPILOT_FILE="$REPO_ROOT/.github/copilot-instructions.md"
+CURSOR_FILE="$REPO_ROOT/.cursor/rules/specify-rules.mdc"
+QWEN_FILE="$REPO_ROOT/QWEN.md"
+AGENTS_FILE="$REPO_ROOT/AGENTS.md"
+WINDSURF_FILE="$REPO_ROOT/.windsurf/rules/specify-rules.md"
+KILOCODE_FILE="$REPO_ROOT/.kilocode/rules/specify-rules.md"
+AUGGIE_FILE="$REPO_ROOT/.augment/rules/specify-rules.md"
+ROO_FILE="$REPO_ROOT/.roo/rules/specify-rules.md"
+
+# Template file
+TEMPLATE_FILE="$REPO_ROOT/.specify/templates/agent-file-template.md"
+
+# Global variables for parsed plan data
+NEW_LANG=""
+NEW_FRAMEWORK=""
+NEW_DB=""
+NEW_PROJECT_TYPE=""
+
+#==============================================================================
+# Utility Functions
+#==============================================================================
+
+log_info() {
+    echo "INFO: $1"
+}
+
+log_success() {
+    echo "✓ $1"
+}
+
+log_error() {
+    echo "ERROR: $1" >&2
+}
+
+log_warning() {
+    echo "WARNING: $1" >&2
+}
+
+# Cleanup function for temporary files
+cleanup() {
+    local exit_code=$?
+    rm -f /tmp/agent_update_*_$$
+    rm -f /tmp/manual_additions_$$
+    exit $exit_code
+}
+
+# Set up cleanup trap
+trap cleanup EXIT INT TERM
+
+#==============================================================================
+# Validation Functions
+#==============================================================================
+
+validate_environment() {
+    # Check if we have a current branch/feature (git or non-git)
+    if [[ -z "$CURRENT_BRANCH" ]]; then
+        log_error "Unable to determine current feature"
+        if [[ "$HAS_GIT" == "true" ]]; then
+            log_info "Make sure you're on a feature branch"
        else
-  echo "Updating existing $agent_name context file..."; manual_start=$(grep -n "<!-- MANUAL ADDITIONS START -->" "$target_file" | cut -d: -f1); manual_end=$(grep -n "<!-- MANUAL ADDITIONS END -->" "$target_file" | cut -d: -f1); if [ -n "$manual_start" ] && [ -n "$manual_end" ]; then sed -n "${manual_start},${manual_end}p" "$target_file" > /tmp/manual_additions.txt; fi;
-  python3 - "$target_file" <<'EOF'
-import re,sys,datetime
-target=sys.argv[1]
-with open(target) as f: content=f.read()
-NEW_LANG="'$NEW_LANG'";NEW_FRAMEWORK="'$NEW_FRAMEWORK'";CURRENT_BRANCH="'$CURRENT_BRANCH'";NEW_DB="'$NEW_DB'";NEW_PROJECT_TYPE="'$NEW_PROJECT_TYPE'"
-# Tech section
-m=re.search(r'## Active Technologies\n(.*?)\n\n',content, re.DOTALL)
-if m:
-  existing=m.group(1)
-  additions=[]
-  if '$NEW_LANG' and '$NEW_LANG' not in existing: additions.append(f"- $NEW_LANG + $NEW_FRAMEWORK ($CURRENT_BRANCH)")
-  if '$NEW_DB' and '$NEW_DB' not in existing and '$NEW_DB'!='N/A': additions.append(f"- $NEW_DB ($CURRENT_BRANCH)")
-  if additions:
-    new_block=existing+"\n"+"\n".join(additions)
-    content=content.replace(m.group(0),f"## Active Technologies\n{new_block}\n\n")
-# Recent changes
-m2=re.search(r'## Recent Changes\n(.*?)(\n\n|$)',content, re.DOTALL)
-if m2:
-  lines=[l for l in m2.group(1).strip().split('\n') if l]
-  lines.insert(0,f"- $CURRENT_BRANCH: Added $NEW_LANG + $NEW_FRAMEWORK")
-  lines=lines[:3]
-  content=re.sub(r'## Recent Changes\n.*?(\n\n|$)', '## Recent Changes\n'+"\n".join(lines)+'\n\n', content, flags=re.DOTALL)
-content=re.sub(r'Last updated: \d{4}-\d{2}-\d{2}', 'Last updated: '+datetime.datetime.now().strftime('%Y-%m-%d'), content)
-open(target+'.tmp','w').write(content)
-EOF
-  mv "$target_file.tmp" "$target_file"; if [ -f /tmp/manual_additions.txt ]; then sed -i.bak '/<!-- MANUAL ADDITIONS START -->/,/<!-- MANUAL ADDITIONS END -->/d' "$target_file"; cat /tmp/manual_additions.txt >> "$target_file"; rm /tmp/manual_additions.txt "$target_file.bak"; fi;
-fi; mv "$temp_file" "$target_file" 2>/dev/null || true; echo "✅ $agent_name context file updated successfully"; }
-case "$AGENT_TYPE" in
-  claude) update_agent_file "$CLAUDE_FILE" "Claude Code" ;;
-  gemini) update_agent_file "$GEMINI_FILE" "Gemini CLI" ;;
-  copilot) update_agent_file "$COPILOT_FILE" "GitHub Copilot" ;;
-  cursor) update_agent_file "$CURSOR_FILE" "Cursor IDE" ;;
-  qwen) update_agent_file "$QWEN_FILE" "Qwen Code" ;;
-  opencode) update_agent_file "$AGENTS_FILE" "opencode" ;;
-  codex) update_agent_file "$AGENTS_FILE" "Codex CLI" ;;
-  windsurf) update_agent_file "$WINDSURF_FILE" "Windsurf" ;;
-  "") [ -f "$CLAUDE_FILE" ] && update_agent_file "$CLAUDE_FILE" "Claude Code"; \
-       [ -f "$GEMINI_FILE" ] && update_agent_file "$GEMINI_FILE" "Gemini CLI"; \
-       [ -f "$COPILOT_FILE" ] && update_agent_file "$COPILOT_FILE" "GitHub Copilot"; \
-       [ -f "$CURSOR_FILE" ] && update_agent_file "$CURSOR_FILE" "Cursor IDE"; \
-       [ -f "$QWEN_FILE" ] && update_agent_file "$QWEN_FILE" "Qwen Code"; \
-       [ -f "$AGENTS_FILE" ] && update_agent_file "$AGENTS_FILE" "Codex/opencode"; \
-       [ -f "$WINDSURF_FILE" ] && update_agent_file "$WINDSURF_FILE" "Windsurf"; \
-       if [ ! -f "$CLAUDE_FILE" ] && [ ! -f "$GEMINI_FILE" ] && [ ! -f "$COPILOT_FILE" ] && [ ! -f "$CURSOR_FILE" ] && [ ! -f "$QWEN_FILE" ] && [ ! -f "$AGENTS_FILE" ] && [ ! -f "$WINDSURF_FILE" ]; then update_agent_file "$CLAUDE_FILE" "Claude Code"; fi ;;
-  *) echo "ERROR: Unknown agent type '$AGENT_TYPE' (expected claude|gemini|copilot|cursor|qwen|opencode|codex|windsurf)"; exit 1 ;;
+            log_info "Set SPECIFY_FEATURE environment variable or create a feature first"
+        fi
+        exit 1
+    fi
+    
+    # Check if plan.md exists
+    if [[ ! -f "$NEW_PLAN" ]]; then
+        log_error "No plan.md found at $NEW_PLAN"
+        log_info "Make sure you're working on a feature with a corresponding spec directory"
+        if [[ "$HAS_GIT" != "true" ]]; then
+            log_info "Use: export SPECIFY_FEATURE=your-feature-name or create a new feature first"
+        fi
+        exit 1
+    fi
+    
+    # Check if template exists (needed for new files)
+    if [[ ! -f "$TEMPLATE_FILE" ]]; then
+        log_warning "Template file not found at $TEMPLATE_FILE"
+        log_warning "Creating new agent files will fail"
+    fi
+}
+
+#==============================================================================
+# Plan Parsing Functions
+#==============================================================================
+
+extract_plan_field() {
+    local field_pattern="$1"
+    local plan_file="$2"
+    
+    grep "^\*\*${field_pattern}\*\*: " "$plan_file" 2>/dev/null | \
+        head -1 | \
+        sed "s|^\*\*${field_pattern}\*\*: ||" | \
+        sed 's/^[ \t]*//;s/[ \t]*$//' | \
+        grep -v "NEEDS CLARIFICATION" | \
+        grep -v "^N/A$" || echo ""
+}
+
+parse_plan_data() {
+    local plan_file="$1"
+    
+    if [[ ! -f "$plan_file" ]]; then
+        log_error "Plan file not found: $plan_file"
+        return 1
+    fi
+    
+    if [[ ! -r "$plan_file" ]]; then
+        log_error "Plan file is not readable: $plan_file"
+        return 1
+    fi
+    
+    log_info "Parsing plan data from $plan_file"
+    
+    NEW_LANG=$(extract_plan_field "Language/Version" "$plan_file")
+    NEW_FRAMEWORK=$(extract_plan_field "Primary Dependencies" "$plan_file")
+    NEW_DB=$(extract_plan_field "Storage" "$plan_file")
+    NEW_PROJECT_TYPE=$(extract_plan_field "Project Type" "$plan_file")
+    
+    # Log what we found
+    if [[ -n "$NEW_LANG" ]]; then
+        log_info "Found language: $NEW_LANG"
+    else
+        log_warning "No language information found in plan"
+    fi
+    
+    if [[ -n "$NEW_FRAMEWORK" ]]; then
+        log_info "Found framework: $NEW_FRAMEWORK"
+    fi
+    
+    if [[ -n "$NEW_DB" ]] && [[ "$NEW_DB" != "N/A" ]]; then
+        log_info "Found database: $NEW_DB"
+    fi
+    
+    if [[ -n "$NEW_PROJECT_TYPE" ]]; then
+        log_info "Found project type: $NEW_PROJECT_TYPE"
+    fi
+}
+
+format_technology_stack() {
+    local lang="$1"
+    local framework="$2"
+    local parts=()
+    
+    # Add non-empty parts
+    [[ -n "$lang" && "$lang" != "NEEDS CLARIFICATION" ]] && parts+=("$lang")
+    [[ -n "$framework" && "$framework" != "NEEDS CLARIFICATION" && "$framework" != "N/A" ]] && parts+=("$framework")
+    
+    # Join with proper formatting
+    if [[ ${#parts[@]} -eq 0 ]]; then
+        echo ""
+    elif [[ ${#parts[@]} -eq 1 ]]; then
+        echo "${parts[0]}"
+    else
+        # Join multiple parts with " + "
+        local result="${parts[0]}"
+        for ((i=1; i<${#parts[@]}; i++)); do
+            result="$result + ${parts[i]}"
+        done
+        echo "$result"
+    fi
+}
+
+#==============================================================================
+# Template and Content Generation Functions
+#==============================================================================
+
+get_project_structure() {
+    local project_type="$1"
+    
+    if [[ "$project_type" == *"web"* ]]; then
+        echo "backend/\\nfrontend/\\ntests/"
+    else
+        echo "src/\\ntests/"
+    fi
+}
+
+get_commands_for_language() {
+    local lang="$1"
+    
+    case "$lang" in
+        *"Python"*)
+            echo "cd src && pytest && ruff check ."
+            ;;
+        *"Rust"*)
+            echo "cargo test && cargo clippy"
+            ;;
+        *"JavaScript"*|*"TypeScript"*)
+            echo "npm test && npm run lint"
+            ;;
+        *)
+            echo "# Add commands for $lang"
+            ;;
    esac
-echo; echo "Summary of changes:"; [ -n "$NEW_LANG" ] && echo "- Added language: $NEW_LANG"; [ -n "$NEW_FRAMEWORK" ] && echo "- Added framework: $NEW_FRAMEWORK"; [ -n "$NEW_DB" ] && [ "$NEW_DB" != "N/A" ] && echo "- Added database: $NEW_DB"; echo; echo "Usage: $0 [claude|gemini|copilot|cursor|qwen|opencode|codex|windsurf]"
+}
+
+get_language_conventions() {
+    local lang="$1"
+    echo "$lang: Follow standard conventions"
+}
+
+create_new_agent_file() {
+    local target_file="$1"
+    local temp_file="$2"
+    local project_name="$3"
+    local current_date="$4"
+    
+    if [[ ! -f "$TEMPLATE_FILE" ]]; then
+        log_error "Template not found at $TEMPLATE_FILE"
+        return 1
+    fi
+    
+    if [[ ! -r "$TEMPLATE_FILE" ]]; then
+        log_error "Template file is not readable: $TEMPLATE_FILE"
+        return 1
+    fi
+    
+    log_info "Creating new agent context file from template..."
+    
+    if ! cp "$TEMPLATE_FILE" "$temp_file"; then
+        log_error "Failed to copy template file"
+        return 1
+    fi
+    
+    # Replace template placeholders
+    local project_structure
+    project_structure=$(get_project_structure "$NEW_PROJECT_TYPE")
+    
+    local commands
+    commands=$(get_commands_for_language "$NEW_LANG")
+    
+    local language_conventions
+    language_conventions=$(get_language_conventions "$NEW_LANG")
+    
+    # Perform substitutions with error checking using safer approach
+    # Escape special characters for sed by using a different delimiter or escaping
+    local escaped_lang=$(printf '%s\n' "$NEW_LANG" | sed 's/[\[\.*^$()+{}|]/\\&/g')
+    local escaped_framework=$(printf '%s\n' "$NEW_FRAMEWORK" | sed 's/[\[\.*^$()+{}|]/\\&/g')
+    local escaped_branch=$(printf '%s\n' "$CURRENT_BRANCH" | sed 's/[\[\.*^$()+{}|]/\\&/g')
+    
+    # Build technology stack and recent change strings conditionally
+    local tech_stack
+    if [[ -n "$escaped_lang" && -n "$escaped_framework" ]]; then
+        tech_stack="- $escaped_lang + $escaped_framework ($escaped_branch)"
+    elif [[ -n "$escaped_lang" ]]; then
+        tech_stack="- $escaped_lang ($escaped_branch)"
+    elif [[ -n "$escaped_framework" ]]; then
+        tech_stack="- $escaped_framework ($escaped_branch)"
+    else
+        tech_stack="- ($escaped_branch)"
+    fi
+
+    local recent_change
+    if [[ -n "$escaped_lang" && -n "$escaped_framework" ]]; then
+        recent_change="- $escaped_branch: Added $escaped_lang + $escaped_framework"
+    elif [[ -n "$escaped_lang" ]]; then
+        recent_change="- $escaped_branch: Added $escaped_lang"
+    elif [[ -n "$escaped_framework" ]]; then
+        recent_change="- $escaped_branch: Added $escaped_framework"
+    else
+        recent_change="- $escaped_branch: Added"
+    fi
+
+    local substitutions=(
+        "s|\[PROJECT NAME\]|$project_name|"
+        "s|\[DATE\]|$current_date|"
+        "s|\[EXTRACTED FROM ALL PLAN.MD FILES\]|$tech_stack|"
+        "s|\[ACTUAL STRUCTURE FROM PLANS\]|$project_structure|g"
+        "s|\[ONLY COMMANDS FOR ACTIVE TECHNOLOGIES\]|$commands|"
+        "s|\[LANGUAGE-SPECIFIC, ONLY FOR LANGUAGES IN USE\]|$language_conventions|"
+        "s|\[LAST 3 FEATURES AND WHAT THEY ADDED\]|$recent_change|"
+    )
+    
+    for substitution in "${substitutions[@]}"; do
+        if ! sed -i.bak -e "$substitution" "$temp_file"; then
+            log_error "Failed to perform substitution: $substitution"
+            rm -f "$temp_file" "$temp_file.bak"
+            return 1
+        fi
+    done
+    
+    # Convert \n sequences to actual newlines
+    newline=$(printf '\n')
+    sed -i.bak2 "s/\\\\n/${newline}/g" "$temp_file"
+    
+    # Clean up backup files
+    rm -f "$temp_file.bak" "$temp_file.bak2"
+    
+    return 0
+}
+
+
+
+
+update_existing_agent_file() {
+    local target_file="$1"
+    local current_date="$2"
+    
+    log_info "Updating existing agent context file..."
+    
+    # Use a single temporary file for atomic update
+    local temp_file
+    temp_file=$(mktemp) || {
+        log_error "Failed to create temporary file"
+        return 1
+    }
+    
+    # Process the file in one pass
+    local tech_stack=$(format_technology_stack "$NEW_LANG" "$NEW_FRAMEWORK")
+    local new_tech_entries=()
+    local new_change_entry=""
+    
+    # Prepare new technology entries
+    if [[ -n "$tech_stack" ]] && ! grep -q "$tech_stack" "$target_file"; then
+        new_tech_entries+=("- $tech_stack ($CURRENT_BRANCH)")
+    fi
+    
+    if [[ -n "$NEW_DB" ]] && [[ "$NEW_DB" != "N/A" ]] && [[ "$NEW_DB" != "NEEDS CLARIFICATION" ]] && ! grep -q "$NEW_DB" "$target_file"; then
+        new_tech_entries+=("- $NEW_DB ($CURRENT_BRANCH)")
+    fi
+    
+    # Prepare new change entry
+    if [[ -n "$tech_stack" ]]; then
+        new_change_entry="- $CURRENT_BRANCH: Added $tech_stack"
+    elif [[ -n "$NEW_DB" ]] && [[ "$NEW_DB" != "N/A" ]] && [[ "$NEW_DB" != "NEEDS CLARIFICATION" ]]; then
+        new_change_entry="- $CURRENT_BRANCH: Added $NEW_DB"
+    fi
+    
+    # Process file line by line
+    local in_tech_section=false
+    local in_changes_section=false
+    local tech_entries_added=false
+    local changes_entries_added=false
+    local existing_changes_count=0
+    
+    while IFS= read -r line || [[ -n "$line" ]]; do
+        # Handle Active Technologies section
+        if [[ "$line" == "## Active Technologies" ]]; then
+            echo "$line" >> "$temp_file"
+            in_tech_section=true
+            continue
+        elif [[ $in_tech_section == true ]] && [[ "$line" =~ ^##[[:space:]] ]]; then
+            # Add new tech entries before closing the section
+            if [[ $tech_entries_added == false ]] && [[ ${#new_tech_entries[@]} -gt 0 ]]; then
+                printf '%s\n' "${new_tech_entries[@]}" >> "$temp_file"
+                tech_entries_added=true
+            fi
+            echo "$line" >> "$temp_file"
+            in_tech_section=false
+            continue
+        elif [[ $in_tech_section == true ]] && [[ -z "$line" ]]; then
+            # Add new tech entries before empty line in tech section
+            if [[ $tech_entries_added == false ]] && [[ ${#new_tech_entries[@]} -gt 0 ]]; then
+                printf '%s\n' "${new_tech_entries[@]}" >> "$temp_file"
+                tech_entries_added=true
+            fi
+            echo "$line" >> "$temp_file"
+            continue
+        fi
+        
+        # Handle Recent Changes section
+        if [[ "$line" == "## Recent Changes" ]]; then
+            echo "$line" >> "$temp_file"
+            # Add new change entry right after the heading
+            if [[ -n "$new_change_entry" ]]; then
+                echo "$new_change_entry" >> "$temp_file"
+            fi
+            in_changes_section=true
+            changes_entries_added=true
+            continue
+        elif [[ $in_changes_section == true ]] && [[ "$line" =~ ^##[[:space:]] ]]; then
+            echo "$line" >> "$temp_file"
+            in_changes_section=false
+            continue
+        elif [[ $in_changes_section == true ]] && [[ "$line" == "- "* ]]; then
+            # Keep only first 2 existing changes
+            if [[ $existing_changes_count -lt 2 ]]; then
+                echo "$line" >> "$temp_file"
+                ((existing_changes_count++))
+            fi
+            continue
+        fi
+        
+        # Update timestamp
+        if [[ "$line" =~ \*\*Last\ updated\*\*:.*[0-9][0-9][0-9][0-9]-[0-9][0-9]-[0-9][0-9] ]]; then
+            echo "$line" | sed "s/[0-9][0-9][0-9][0-9]-[0-9][0-9]-[0-9][0-9]/$current_date/" >> "$temp_file"
+        else
+            echo "$line" >> "$temp_file"
+        fi
+    done < "$target_file"
+    
+    # Post-loop check: if we're still in the Active Technologies section and haven't added new entries
+    if [[ $in_tech_section == true ]] && [[ $tech_entries_added == false ]] && [[ ${#new_tech_entries[@]} -gt 0 ]]; then
+        printf '%s\n' "${new_tech_entries[@]}" >> "$temp_file"
+    fi
+    
+    # Move temp file to target atomically
+    if ! mv "$temp_file" "$target_file"; then
+        log_error "Failed to update target file"
+        rm -f "$temp_file"
+        return 1
+    fi
+    
+    return 0
+}
+#==============================================================================
+# Main Agent File Update Function
+#==============================================================================
+
+update_agent_file() {
+    local target_file="$1"
+    local agent_name="$2"
+    
+    if [[ -z "$target_file" ]] || [[ -z "$agent_name" ]]; then
+        log_error "update_agent_file requires target_file and agent_name parameters"
+        return 1
+    fi
+    
+    log_info "Updating $agent_name context file: $target_file"
+    
+    local project_name
+    project_name=$(basename "$REPO_ROOT")
+    local current_date
+    current_date=$(date +%Y-%m-%d)
+    
+    # Create directory if it doesn't exist
+    local target_dir
+    target_dir=$(dirname "$target_file")
+    if [[ ! -d "$target_dir" ]]; then
+        if ! mkdir -p "$target_dir"; then
+            log_error "Failed to create directory: $target_dir"
+            return 1
+        fi
+    fi
+    
+    if [[ ! -f "$target_file" ]]; then
+        # Create new file from template
+        local temp_file
+        temp_file=$(mktemp) || {
+            log_error "Failed to create temporary file"
+            return 1
+        }
+        
+        if create_new_agent_file "$target_file" "$temp_file" "$project_name" "$current_date"; then
+            if mv "$temp_file" "$target_file"; then
+                log_success "Created new $agent_name context file"
+            else
+                log_error "Failed to move temporary file to $target_file"
+                rm -f "$temp_file"
+                return 1
+            fi
+        else
+            log_error "Failed to create new agent file"
+            rm -f "$temp_file"
+            return 1
+        fi
+    else
+        # Update existing file
+        if [[ ! -r "$target_file" ]]; then
+            log_error "Cannot read existing file: $target_file"
+            return 1
+        fi
+        
+        if [[ ! -w "$target_file" ]]; then
+            log_error "Cannot write to existing file: $target_file"
+            return 1
+        fi
+        
+        if update_existing_agent_file "$target_file" "$current_date"; then
+            log_success "Updated existing $agent_name context file"
+        else
+            log_error "Failed to update existing agent file"
+            return 1
+        fi
+    fi
+    
+    return 0
+}
+
+#==============================================================================
+# Agent Selection and Processing
+#==============================================================================
+
+update_specific_agent() {
+    local agent_type="$1"
+    
+    case "$agent_type" in
+        claude)
+            update_agent_file "$CLAUDE_FILE" "Claude Code"
+            ;;
+        gemini)
+            update_agent_file "$GEMINI_FILE" "Gemini CLI"
+            ;;
+        copilot)
+            update_agent_file "$COPILOT_FILE" "GitHub Copilot"
+            ;;
+        cursor)
+            update_agent_file "$CURSOR_FILE" "Cursor IDE"
+            ;;
+        qwen)
+            update_agent_file "$QWEN_FILE" "Qwen Code"
+            ;;
+        opencode)
+            update_agent_file "$AGENTS_FILE" "opencode"
+            ;;
+        codex)
+            update_agent_file "$AGENTS_FILE" "Codex CLI"
+            ;;
+        windsurf)
+            update_agent_file "$WINDSURF_FILE" "Windsurf"
+            ;;
+        kilocode)
+            update_agent_file "$KILOCODE_FILE" "Kilo Code"
+            ;;
+        auggie)
+            update_agent_file "$AUGGIE_FILE" "Auggie CLI"
+            ;;
+        roo)
+            update_agent_file "$ROO_FILE" "Roo Code"
+            ;;
+        *)
+            log_error "Unknown agent type '$agent_type'"
+            log_error "Expected: claude|gemini|copilot|cursor|qwen|opencode|codex|windsurf|kilocode|auggie|roo"
+            exit 1
+            ;;
+    esac
+}
+
+update_all_existing_agents() {
+    local found_agent=false
+    
+    # Check each possible agent file and update if it exists
+    if [[ -f "$CLAUDE_FILE" ]]; then
+        update_agent_file "$CLAUDE_FILE" "Claude Code"
+        found_agent=true
+    fi
+    
+    if [[ -f "$GEMINI_FILE" ]]; then
+        update_agent_file "$GEMINI_FILE" "Gemini CLI"
+        found_agent=true
+    fi
+    
+    if [[ -f "$COPILOT_FILE" ]]; then
+        update_agent_file "$COPILOT_FILE" "GitHub Copilot"
+        found_agent=true
+    fi
+    
+    if [[ -f "$CURSOR_FILE" ]]; then
+        update_agent_file "$CURSOR_FILE" "Cursor IDE"
+        found_agent=true
+    fi
+    
+    if [[ -f "$QWEN_FILE" ]]; then
+        update_agent_file "$QWEN_FILE" "Qwen Code"
+        found_agent=true
+    fi
+    
+    if [[ -f "$AGENTS_FILE" ]]; then
+        update_agent_file "$AGENTS_FILE" "Codex/opencode"
+        found_agent=true
+    fi
+    
+    if [[ -f "$WINDSURF_FILE" ]]; then
+        update_agent_file "$WINDSURF_FILE" "Windsurf"
+        found_agent=true
+    fi
+    
+    if [[ -f "$KILOCODE_FILE" ]]; then
+        update_agent_file "$KILOCODE_FILE" "Kilo Code"
+        found_agent=true
+    fi
+
+    if [[ -f "$AUGGIE_FILE" ]]; then
+        update_agent_file "$AUGGIE_FILE" "Auggie CLI"
+        found_agent=true
+    fi
+    
+    if [[ -f "$ROO_FILE" ]]; then
+        update_agent_file "$ROO_FILE" "Roo Code"
+        found_agent=true
+    fi
+    
+    # If no agent files exist, create a default Claude file
+    if [[ "$found_agent" == false ]]; then
+        log_info "No existing agent files found, creating default Claude file..."
+        update_agent_file "$CLAUDE_FILE" "Claude Code"
+    fi
+}
+print_summary() {
+    echo
+    log_info "Summary of changes:"
+    
+    if [[ -n "$NEW_LANG" ]]; then
+        echo "  - Added language: $NEW_LANG"
+    fi
+    
+    if [[ -n "$NEW_FRAMEWORK" ]]; then
+        echo "  - Added framework: $NEW_FRAMEWORK"
+    fi
+    
+    if [[ -n "$NEW_DB" ]] && [[ "$NEW_DB" != "N/A" ]]; then
+        echo "  - Added database: $NEW_DB"
+    fi
+    
+    echo
+    log_info "Usage: $0 [claude|gemini|copilot|cursor|qwen|opencode|codex|windsurf|kilocode|auggie|roo]"
+}
+
+#==============================================================================
+# Main Execution
+#==============================================================================
+
+main() {
+    # Validate environment before proceeding
+    validate_environment
+    
+    log_info "=== Updating agent context files for feature $CURRENT_BRANCH ==="
+    
+    # Parse the plan file to extract project information
+    if ! parse_plan_data "$NEW_PLAN"; then
+        log_error "Failed to parse plan data"
+        exit 1
+    fi
+    
+    # Process based on agent type argument
+    local success=true
+    
+    if [[ -z "$AGENT_TYPE" ]]; then
+        # No specific agent provided - update all existing agent files
+        log_info "No agent specified, updating all existing agent files..."
+        if ! update_all_existing_agents; then
+            success=false
+        fi
+    else
+        # Specific agent provided - update only that agent
+        log_info "Updating specific agent: $AGENT_TYPE"
+        if ! update_specific_agent "$AGENT_TYPE"; then
+            success=false
+        fi
+    fi
+    
+    # Print summary
+    print_summary
+    
+    if [[ "$success" == true ]]; then
+        log_success "Agent context update completed successfully"
+        exit 0
+    else
+        log_error "Agent context update completed with errors"
+        exit 1
+    fi
+}
+
+# Execute main function if script is run directly
+if [[ "${BASH_SOURCE[0]}" == "${0}" ]]; then
+    main "$@"
+fi
--- a/scripts/powershell/check-implementation-prerequisites.ps1
+++ b/scripts/powershell/check-implementation-prerequisites.ps1
@@ -1,42 +0,0 @@
-#!/usr/bin/env pwsh
-[CmdletBinding()]
-param([switch]$Json)
-$ErrorActionPreference = 'Stop'
-. "$PSScriptRoot/common.ps1"
-
-$paths = Get-FeaturePathsEnv
-if (-not (Test-FeatureBranch -Branch $paths.CURRENT_BRANCH)) { exit 1 }
-
-if (-not (Test-Path $paths.FEATURE_DIR -PathType Container)) {
-    Write-Output "ERROR: Feature directory not found: $($paths.FEATURE_DIR)"
-    Write-Output "Run /specify first to create the feature structure."
-    exit 1
-}
-if (-not (Test-Path $paths.IMPL_PLAN -PathType Leaf)) {
-    Write-Output "ERROR: plan.md not found in $($paths.FEATURE_DIR)"
-    Write-Output "Run /plan first to create the plan."
-    exit 1
-}
-if (-not (Test-Path $paths.TASKS -PathType Leaf)) {
-    Write-Output "ERROR: tasks.md not found in $($paths.FEATURE_DIR)"
-    Write-Output "Run /tasks first to create the task list."
-    exit 1
-}
-
-if ($Json) {
-    $docs = @()
-    if (Test-Path $paths.RESEARCH) { $docs += 'research.md' }
-    if (Test-Path $paths.DATA_MODEL) { $docs += 'data-model.md' }
-    if ((Test-Path $paths.CONTRACTS_DIR) -and (Get-ChildItem -Path $paths.CONTRACTS_DIR -ErrorAction SilentlyContinue | Select-Object -First 1)) { $docs += 'contracts/' }
-    if (Test-Path $paths.QUICKSTART) { $docs += 'quickstart.md' }
-    if (Test-Path $paths.TASKS) { $docs += 'tasks.md' }
-    [PSCustomObject]@{ FEATURE_DIR=$paths.FEATURE_DIR; AVAILABLE_DOCS=$docs } | ConvertTo-Json -Compress
-} else {
-    Write-Output "FEATURE_DIR:$($paths.FEATURE_DIR)"
-    Write-Output "AVAILABLE_DOCS:"
-    Test-FileExists -Path $paths.RESEARCH -Description 'research.md' | Out-Null
-    Test-FileExists -Path $paths.DATA_MODEL -Description 'data-model.md' | Out-Null
-    Test-DirHasFiles -Path $paths.CONTRACTS_DIR -Description 'contracts/' | Out-Null
-    Test-FileExists -Path $paths.QUICKSTART -Description 'quickstart.md' | Out-Null
-    Test-FileExists -Path $paths.TASKS -Description 'tasks.md' | Out-Null
-}
--- a/scripts/powershell/check-prerequisites.ps1
+++ b/scripts/powershell/check-prerequisites.ps1
@@ -0,0 +1,137 @@
+#!/usr/bin/env pwsh
+
+# Consolidated prerequisite checking script (PowerShell)
+#
+# This script provides unified prerequisite checking for Spec-Driven Development workflow.
+# It replaces the functionality previously spread across multiple scripts.
+#
+# Usage: ./check-prerequisites.ps1 [OPTIONS]
+#
+# OPTIONS:
+#   -Json               Output in JSON format
+#   -RequireTasks       Require tasks.md to exist (for implementation phase)
+#   -IncludeTasks       Include tasks.md in AVAILABLE_DOCS list
+#   -PathsOnly          Only output path variables (no validation)
+#   -Help, -h           Show help message
+
+[CmdletBinding()]
+param(
+    [switch]$Json,
+    [switch]$RequireTasks,
+    [switch]$IncludeTasks,
+    [switch]$PathsOnly,
+    [switch]$Help
+)
+
+$ErrorActionPreference = 'Stop'
+
+# Show help if requested
+if ($Help) {
+    Write-Output @"
+Usage: check-prerequisites.ps1 [OPTIONS]
+
+Consolidated prerequisite checking for Spec-Driven Development workflow.
+
+OPTIONS:
+  -Json               Output in JSON format
+  -RequireTasks       Require tasks.md to exist (for implementation phase)
+  -IncludeTasks       Include tasks.md in AVAILABLE_DOCS list
+  -PathsOnly          Only output path variables (no prerequisite validation)
+  -Help, -h           Show this help message
+
+EXAMPLES:
+  # Check task prerequisites (plan.md required)
+  .\check-prerequisites.ps1 -Json
+  
+  # Check implementation prerequisites (plan.md + tasks.md required)
+  .\check-prerequisites.ps1 -Json -RequireTasks -IncludeTasks
+  
+  # Get feature paths only (no validation)
+  .\check-prerequisites.ps1 -PathsOnly
+
+"@
+    exit 0
+}
+
+# Source common functions
+. "$PSScriptRoot/common.ps1"
+
+# Get feature paths and validate branch
+$paths = Get-FeaturePathsEnv
+
+if (-not (Test-FeatureBranch -Branch $paths.CURRENT_BRANCH -HasGit:$paths.HAS_GIT)) { 
+    exit 1 
+}
+
+# If paths-only mode, output paths and exit
+if ($PathsOnly) {
+    Write-Output "REPO_ROOT: $($paths.REPO_ROOT)"
+    Write-Output "BRANCH: $($paths.CURRENT_BRANCH)"
+    Write-Output "FEATURE_DIR: $($paths.FEATURE_DIR)"
+    Write-Output "FEATURE_SPEC: $($paths.FEATURE_SPEC)"
+    Write-Output "IMPL_PLAN: $($paths.IMPL_PLAN)"
+    Write-Output "TASKS: $($paths.TASKS)"
+    exit 0
+}
+
+# Validate required directories and files
+if (-not (Test-Path $paths.FEATURE_DIR -PathType Container)) {
+    Write-Output "ERROR: Feature directory not found: $($paths.FEATURE_DIR)"
+    Write-Output "Run /specify first to create the feature structure."
+    exit 1
+}
+
+if (-not (Test-Path $paths.IMPL_PLAN -PathType Leaf)) {
+    Write-Output "ERROR: plan.md not found in $($paths.FEATURE_DIR)"
+    Write-Output "Run /plan first to create the implementation plan."
+    exit 1
+}
+
+# Check for tasks.md if required
+if ($RequireTasks -and -not (Test-Path $paths.TASKS -PathType Leaf)) {
+    Write-Output "ERROR: tasks.md not found in $($paths.FEATURE_DIR)"
+    Write-Output "Run /tasks first to create the task list."
+    exit 1
+}
+
+# Build list of available documents
+$docs = @()
+
+# Always check these optional docs
+if (Test-Path $paths.RESEARCH) { $docs += 'research.md' }
+if (Test-Path $paths.DATA_MODEL) { $docs += 'data-model.md' }
+
+# Check contracts directory (only if it exists and has files)
+if ((Test-Path $paths.CONTRACTS_DIR) -and (Get-ChildItem -Path $paths.CONTRACTS_DIR -ErrorAction SilentlyContinue | Select-Object -First 1)) { 
+    $docs += 'contracts/' 
+}
+
+if (Test-Path $paths.QUICKSTART) { $docs += 'quickstart.md' }
+
+# Include tasks.md if requested and it exists
+if ($IncludeTasks -and (Test-Path $paths.TASKS)) { 
+    $docs += 'tasks.md' 
+}
+
+# Output results
+if ($Json) {
+    # JSON output
+    [PSCustomObject]@{ 
+        FEATURE_DIR = $paths.FEATURE_DIR
+        AVAILABLE_DOCS = $docs 
+    } | ConvertTo-Json -Compress
+} else {
+    # Text output
+    Write-Output "FEATURE_DIR:$($paths.FEATURE_DIR)"
+    Write-Output "AVAILABLE_DOCS:"
+    
+    # Show status of each potential document
+    Test-FileExists -Path $paths.RESEARCH -Description 'research.md' | Out-Null
+    Test-FileExists -Path $paths.DATA_MODEL -Description 'data-model.md' | Out-Null
+    Test-DirHasFiles -Path $paths.CONTRACTS_DIR -Description 'contracts/' | Out-Null
+    Test-FileExists -Path $paths.QUICKSTART -Description 'quickstart.md' | Out-Null
+    
+    if ($IncludeTasks) {
+        Test-FileExists -Path $paths.TASKS -Description 'tasks.md' | Out-Null
+    }
+}
--- a/scripts/powershell/check-task-prerequisites.ps1
+++ b/scripts/powershell/check-task-prerequisites.ps1
@@ -1,35 +0,0 @@
-#!/usr/bin/env pwsh
-[CmdletBinding()]
-param([switch]$Json)
-$ErrorActionPreference = 'Stop'
-. "$PSScriptRoot/common.ps1"
-
-$paths = Get-FeaturePathsEnv
-if (-not (Test-FeatureBranch -Branch $paths.CURRENT_BRANCH)) { exit 1 }
-
-if (-not (Test-Path $paths.FEATURE_DIR -PathType Container)) {
-    Write-Output "ERROR: Feature directory not found: $($paths.FEATURE_DIR)"
-    Write-Output "Run /specify first to create the feature structure."
-    exit 1
-}
-if (-not (Test-Path $paths.IMPL_PLAN -PathType Leaf)) {
-    Write-Output "ERROR: plan.md not found in $($paths.FEATURE_DIR)"
-    Write-Output "Run /plan first to create the plan."
-    exit 1
-}
-
-if ($Json) {
-    $docs = @()
-    if (Test-Path $paths.RESEARCH) { $docs += 'research.md' }
-    if (Test-Path $paths.DATA_MODEL) { $docs += 'data-model.md' }
-    if ((Test-Path $paths.CONTRACTS_DIR) -and (Get-ChildItem -Path $paths.CONTRACTS_DIR -ErrorAction SilentlyContinue | Select-Object -First 1)) { $docs += 'contracts/' }
-    if (Test-Path $paths.QUICKSTART) { $docs += 'quickstart.md' }
-    [PSCustomObject]@{ FEATURE_DIR=$paths.FEATURE_DIR; AVAILABLE_DOCS=$docs } | ConvertTo-Json -Compress
-} else {
-    Write-Output "FEATURE_DIR:$($paths.FEATURE_DIR)"
-    Write-Output "AVAILABLE_DOCS:"
-    Test-FileExists -Path $paths.RESEARCH -Description 'research.md' | Out-Null
-    Test-FileExists -Path $paths.DATA_MODEL -Description 'data-model.md' | Out-Null
-    Test-DirHasFiles -Path $paths.CONTRACTS_DIR -Description 'contracts/' | Out-Null
-    Test-FileExists -Path $paths.QUICKSTART -Description 'quickstart.md' | Out-Null
-}
--- a/scripts/powershell/common.ps1
+++ b/scripts/powershell/common.ps1
@@ -1,16 +1,84 @@
 #!/usr/bin/env pwsh
-# Common PowerShell functions analogous to common.sh (moved to powershell/)
+# Common PowerShell functions analogous to common.sh

 function Get-RepoRoot {
-    git rev-parse --show-toplevel
+    try {
+        $result = git rev-parse --show-toplevel 2>$null
+        if ($LASTEXITCODE -eq 0) {
+            return $result
+        }
+    } catch {
+        # Git command failed
+    }
+    
+    # Fall back to script location for non-git repos
+    return (Resolve-Path (Join-Path $PSScriptRoot "../../..")).Path
 }

 function Get-CurrentBranch {
-    git rev-parse --abbrev-ref HEAD
+    # First check if SPECIFY_FEATURE environment variable is set
+    if ($env:SPECIFY_FEATURE) {
+        return $env:SPECIFY_FEATURE
+    }
+    
+    # Then check git if available
+    try {
+        $result = git rev-parse --abbrev-ref HEAD 2>$null
+        if ($LASTEXITCODE -eq 0) {
+            return $result
+        }
+    } catch {
+        # Git command failed
+    }
+    
+    # For non-git repos, try to find the latest feature directory
+    $repoRoot = Get-RepoRoot
+    $specsDir = Join-Path $repoRoot "specs"
+    
+    if (Test-Path $specsDir) {
+        $latestFeature = ""
+        $highest = 0
+        
+        Get-ChildItem -Path $specsDir -Directory | ForEach-Object {
+            if ($_.Name -match '^(\d{3})-') {
+                $num = [int]$matches[1]
+                if ($num -gt $highest) {
+                    $highest = $num
+                    $latestFeature = $_.Name
+                }
+            }
+        }
+        
+        if ($latestFeature) {
+            return $latestFeature
+        }
+    }
+    
+    # Final fallback
+    return "main"
+}
+
+function Test-HasGit {
+    try {
+        git rev-parse --show-toplevel 2>$null | Out-Null
+        return ($LASTEXITCODE -eq 0)
+    } catch {
+        return $false
+    }
 }

 function Test-FeatureBranch {
-    param([string]$Branch)
+    param(
+        [string]$Branch,
+        [bool]$HasGit = $true
+    )
+    
+    # For non-git repos, we can't enforce branch naming but still provide output
+    if (-not $HasGit) {
+        Write-Warning "[specify] Warning: Git repository not detected; skipped branch validation"
+        return $true
+    }
+    
    if ($Branch -notmatch '^[0-9]{3}-') {
        Write-Output "ERROR: Not on a feature branch. Current branch: $Branch"
        Write-Output "Feature branches should be named like: 001-feature-name"
@@ -27,10 +95,13 @@ function Get-FeatureDir {
 function Get-FeaturePathsEnv {
    $repoRoot = Get-RepoRoot
    $currentBranch = Get-CurrentBranch
+    $hasGit = Test-HasGit
    $featureDir = Get-FeatureDir -RepoRoot $repoRoot -Branch $currentBranch
+    
    [PSCustomObject]@{
        REPO_ROOT     = $repoRoot
        CURRENT_BRANCH = $currentBranch
+        HAS_GIT       = $hasGit
        FEATURE_DIR   = $featureDir
        FEATURE_SPEC  = Join-Path $featureDir 'spec.md'
        IMPL_PLAN     = Join-Path $featureDir 'plan.md'
--- a/scripts/powershell/create-new-feature.ps1
+++ b/scripts/powershell/create-new-feature.ps1
@@ -1,5 +1,5 @@
 #!/usr/bin/env pwsh
-# Create a new feature (moved to powershell/)
+# Create a new feature
 [CmdletBinding()]
 param(
    [switch]$Json,
@@ -9,11 +9,54 @@ param(
 $ErrorActionPreference = 'Stop'

 if (-not $FeatureDescription -or $FeatureDescription.Count -eq 0) {
-    Write-Error "Usage: ./create-new-feature.ps1 [-Json] <feature description>"; exit 1
+    Write-Error "Usage: ./create-new-feature.ps1 [-Json] <feature description>"
+    exit 1
 }
 $featureDesc = ($FeatureDescription -join ' ').Trim()

-$repoRoot = git rev-parse --show-toplevel
+# Resolve repository root. Prefer git information when available, but fall back
+# to searching for repository markers so the workflow still functions in repositories that
+# were initialised with --no-git.
+function Find-RepositoryRoot {
+    param(
+        [string]$StartDir,
+        [string[]]$Markers = @('.git', '.specify')
+    )
+    $current = Resolve-Path $StartDir
+    while ($true) {
+        foreach ($marker in $Markers) {
+            if (Test-Path (Join-Path $current $marker)) {
+                return $current
+            }
+        }
+        $parent = Split-Path $current -Parent
+        if ($parent -eq $current) {
+            # Reached filesystem root without finding markers
+            return $null
+        }
+        $current = $parent
+    }
+}
+$fallbackRoot = (Find-RepositoryRoot -StartDir $PSScriptRoot)
+if (-not $fallbackRoot) {
+    Write-Error "Error: Could not determine repository root. Please run this script from within the repository."
+    exit 1
+}
+
+try {
+    $repoRoot = git rev-parse --show-toplevel 2>$null
+    if ($LASTEXITCODE -eq 0) {
+        $hasGit = $true
+    } else {
+        throw "Git not available"
+    }
+} catch {
+    $repoRoot = $fallbackRoot
+    $hasGit = $false
+}
+
+Set-Location $repoRoot
+
 $specsDir = Join-Path $repoRoot 'specs'
 New-Item -ItemType Directory -Path $specsDir -Force | Out-Null

@@ -33,20 +76,42 @@ $branchName = $featureDesc.ToLower() -replace '[^a-z0-9]', '-' -replace '-{2,}',
 $words = ($branchName -split '-') | Where-Object { $_ } | Select-Object -First 3
 $branchName = "$featureNum-$([string]::Join('-', $words))"

+if ($hasGit) {
+    try {
        git checkout -b $branchName | Out-Null
+    } catch {
+        Write-Warning "Failed to create git branch: $branchName"
+    }
+} else {
+    Write-Warning "[specify] Warning: Git repository not detected; skipped branch creation for $branchName"
+}

 $featureDir = Join-Path $specsDir $branchName
 New-Item -ItemType Directory -Path $featureDir -Force | Out-Null

 $template = Join-Path $repoRoot 'templates/spec-template.md'
 $specFile = Join-Path $featureDir 'spec.md'
-if (Test-Path $template) { Copy-Item $template $specFile -Force } else { New-Item -ItemType File -Path $specFile | Out-Null }
+if (Test-Path $template) { 
+    Copy-Item $template $specFile -Force 
+} else { 
+    New-Item -ItemType File -Path $specFile | Out-Null 
+}
+
+# Set the SPECIFY_FEATURE environment variable for the current session
+$env:SPECIFY_FEATURE = $branchName

 if ($Json) {
-    $obj = [PSCustomObject]@{ BRANCH_NAME = $branchName; SPEC_FILE = $specFile; FEATURE_NUM = $featureNum }
+    $obj = [PSCustomObject]@{ 
+        BRANCH_NAME = $branchName
+        SPEC_FILE = $specFile
+        FEATURE_NUM = $featureNum
+        HAS_GIT = $hasGit
+    }
    $obj | ConvertTo-Json -Compress
 } else {
    Write-Output "BRANCH_NAME: $branchName"
    Write-Output "SPEC_FILE: $specFile"
    Write-Output "FEATURE_NUM: $featureNum"
+    Write-Output "HAS_GIT: $hasGit"
+    Write-Output "SPECIFY_FEATURE environment variable set to: $branchName"
 }
--- a/scripts/powershell/get-feature-paths.ps1
+++ b/scripts/powershell/get-feature-paths.ps1
@@ -1,15 +0,0 @@
-#!/usr/bin/env pwsh
-param()
-$ErrorActionPreference = 'Stop'
-
-. "$PSScriptRoot/common.ps1"
-
-$paths = Get-FeaturePathsEnv
-if (-not (Test-FeatureBranch -Branch $paths.CURRENT_BRANCH)) { exit 1 }
-
-Write-Output "REPO_ROOT: $($paths.REPO_ROOT)"
-Write-Output "BRANCH: $($paths.CURRENT_BRANCH)"
-Write-Output "FEATURE_DIR: $($paths.FEATURE_DIR)"
-Write-Output "FEATURE_SPEC: $($paths.FEATURE_SPEC)"
-Write-Output "IMPL_PLAN: $($paths.IMPL_PLAN)"
-Write-Output "TASKS: $($paths.TASKS)"
--- a/scripts/powershell/setup-plan.ps1
+++ b/scripts/powershell/setup-plan.ps1
@@ -1,21 +1,61 @@
 #!/usr/bin/env pwsh
+# Setup implementation plan for a feature
+
 [CmdletBinding()]
-param([switch]$Json)
+param(
+    [switch]$Json,
+    [switch]$Help
+)
+
 $ErrorActionPreference = 'Stop'
+
+# Show help if requested
+if ($Help) {
+    Write-Output "Usage: ./setup-plan.ps1 [-Json] [-Help]"
+    Write-Output "  -Json     Output results in JSON format"
+    Write-Output "  -Help     Show this help message"
+    exit 0
+}
+
+# Load common functions
 . "$PSScriptRoot/common.ps1"

+# Get all paths and variables from common functions
 $paths = Get-FeaturePathsEnv
-if (-not (Test-FeatureBranch -Branch $paths.CURRENT_BRANCH)) { exit 1 }

+# Check if we're on a proper feature branch (only for git repos)
+if (-not (Test-FeatureBranch -Branch $paths.CURRENT_BRANCH -HasGit $paths.HAS_GIT)) { 
+    exit 1 
+}
+
+# Ensure the feature directory exists
 New-Item -ItemType Directory -Path $paths.FEATURE_DIR -Force | Out-Null
-$template = Join-Path $paths.REPO_ROOT 'templates/plan-template.md'
-if (Test-Path $template) { Copy-Item $template $paths.IMPL_PLAN -Force }

+# Copy plan template if it exists, otherwise note it or create empty file
+$template = Join-Path $paths.REPO_ROOT '.specify/templates/plan-template.md'
+if (Test-Path $template) { 
+    Copy-Item $template $paths.IMPL_PLAN -Force
+    Write-Output "Copied plan template to $($paths.IMPL_PLAN)"
+} else {
+    Write-Warning "Plan template not found at $template"
+    # Create a basic plan file if template doesn't exist
+    New-Item -ItemType File -Path $paths.IMPL_PLAN -Force | Out-Null
+}
+
+# Output results
 if ($Json) {
-    [PSCustomObject]@{ FEATURE_SPEC=$paths.FEATURE_SPEC; IMPL_PLAN=$paths.IMPL_PLAN; SPECS_DIR=$paths.FEATURE_DIR; BRANCH=$paths.CURRENT_BRANCH } | ConvertTo-Json -Compress
+    $result = [PSCustomObject]@{ 
+        FEATURE_SPEC = $paths.FEATURE_SPEC
+        IMPL_PLAN = $paths.IMPL_PLAN
+        SPECS_DIR = $paths.FEATURE_DIR
+        BRANCH = $paths.CURRENT_BRANCH
+        HAS_GIT = $paths.HAS_GIT
+    }
+    $result | ConvertTo-Json -Compress
 } else {
    Write-Output "FEATURE_SPEC: $($paths.FEATURE_SPEC)"
    Write-Output "IMPL_PLAN: $($paths.IMPL_PLAN)"
    Write-Output "SPECS_DIR: $($paths.FEATURE_DIR)"
    Write-Output "BRANCH: $($paths.CURRENT_BRANCH)"
+    Write-Output "HAS_GIT: $($paths.HAS_GIT)"
 }
--- a/scripts/powershell/update-agent-context.ps1
+++ b/scripts/powershell/update-agent-context.ps1
@@ -1,109 +1,430 @@
 #!/usr/bin/env pwsh
-[CmdletBinding()]
-param([string]$AgentType)
+<#!
+.SYNOPSIS
+Update agent context files with information from plan.md (PowerShell version)
+
+.DESCRIPTION
+Mirrors the behavior of scripts/bash/update-agent-context.sh:
+ 1. Environment Validation
+ 2. Plan Data Extraction
+ 3. Agent File Management (create from template or update existing)
+ 4. Content Generation (technology stack, recent changes, timestamp)
+ 5. Multi-Agent Support (claude, gemini, copilot, cursor, qwen, opencode, codex, windsurf)
+
+.PARAMETER AgentType
+Optional agent key to update a single agent. If omitted, updates all existing agent files (creating a default Claude file if none exist).
+
+.EXAMPLE
+./update-agent-context.ps1 -AgentType claude
+
+.EXAMPLE
+./update-agent-context.ps1   # Updates all existing agent files
+
+.NOTES
+Relies on common helper functions in common.ps1
+#>
+param(
+    [Parameter(Position=0)]
+    [ValidateSet('claude','gemini','copilot','cursor','qwen','opencode','codex','windsurf','kilocode','auggie','roo')]
+    [string]$AgentType
+)
+
 $ErrorActionPreference = 'Stop'

-$repoRoot = git rev-parse --show-toplevel
-$currentBranch = git rev-parse --abbrev-ref HEAD
-$featureDir = Join-Path $repoRoot "specs/$currentBranch"
-$newPlan = Join-Path $featureDir 'plan.md'
-if (-not (Test-Path $newPlan)) { Write-Error "ERROR: No plan.md found at $newPlan"; exit 1 }
+# Import common helpers
+$ScriptDir = Split-Path -Parent $MyInvocation.MyCommand.Path
+. (Join-Path $ScriptDir 'common.ps1')

-$claudeFile = Join-Path $repoRoot 'CLAUDE.md'
-$geminiFile = Join-Path $repoRoot 'GEMINI.md'
-$copilotFile = Join-Path $repoRoot '.github/copilot-instructions.md'
-$cursorFile = Join-Path $repoRoot '.cursor/rules/specify-rules.mdc'
-$qwenFile = Join-Path $repoRoot 'QWEN.md'
-$agentsFile = Join-Path $repoRoot 'AGENTS.md'
-$windsurfFile = Join-Path $repoRoot '.windsurf/rules/specify-rules.md'
+# Acquire environment paths
+$envData = Get-FeaturePathsEnv
+$REPO_ROOT     = $envData.REPO_ROOT
+$CURRENT_BRANCH = $envData.CURRENT_BRANCH
+$HAS_GIT       = $envData.HAS_GIT
+$IMPL_PLAN     = $envData.IMPL_PLAN
+$NEW_PLAN = $IMPL_PLAN

-Write-Output "=== Updating agent context files for feature $currentBranch ==="
+# Agent file paths
+$CLAUDE_FILE   = Join-Path $REPO_ROOT 'CLAUDE.md'
+$GEMINI_FILE   = Join-Path $REPO_ROOT 'GEMINI.md'
+$COPILOT_FILE  = Join-Path $REPO_ROOT '.github/copilot-instructions.md'
+$CURSOR_FILE   = Join-Path $REPO_ROOT '.cursor/rules/specify-rules.mdc'
+$QWEN_FILE     = Join-Path $REPO_ROOT 'QWEN.md'
+$AGENTS_FILE   = Join-Path $REPO_ROOT 'AGENTS.md'
+$WINDSURF_FILE = Join-Path $REPO_ROOT '.windsurf/rules/specify-rules.md'
+$KILOCODE_FILE = Join-Path $REPO_ROOT '.kilocode/rules/specify-rules.md'
+$AUGGIE_FILE   = Join-Path $REPO_ROOT '.augment/rules/specify-rules.md'
+$ROO_FILE      = Join-Path $REPO_ROOT '.roo/rules/specify-rules.md'

-function Get-PlanValue($pattern) {
-    if (-not (Test-Path $newPlan)) { return '' }
-    $line = Select-String -Path $newPlan -Pattern $pattern | Select-Object -First 1
-    if ($line) { return ($line.Line -replace "^\*\*$pattern\*\*: ", '') }
-    return ''
+$TEMPLATE_FILE = Join-Path $REPO_ROOT '.specify/templates/agent-file-template.md'
+
+# Parsed plan data placeholders
+$script:NEW_LANG = ''
+$script:NEW_FRAMEWORK = ''
+$script:NEW_DB = ''
+$script:NEW_PROJECT_TYPE = ''
+
+function Write-Info { 
+    param(
+        [Parameter(Mandatory=$true)]
+        [string]$Message
+    )
+    Write-Host "INFO: $Message" 
 }

-$newLang = Get-PlanValue 'Language/Version'
-$newFramework = Get-PlanValue 'Primary Dependencies'
-$newTesting = Get-PlanValue 'Testing'
-$newDb = Get-PlanValue 'Storage'
-$newProjectType = Get-PlanValue 'Project Type'
-
-function Initialize-AgentFile($targetFile, $agentName) {
-    if (Test-Path $targetFile) { return }
-    $template = Join-Path $repoRoot '.specify/templates/agent-file-template.md'
-    if (-not (Test-Path $template)) { Write-Error "Template not found: $template"; return }
-    $content = Get-Content $template -Raw
-    $content = $content.Replace('[PROJECT NAME]', (Split-Path $repoRoot -Leaf))
-    $content = $content.Replace('[DATE]', (Get-Date -Format 'yyyy-MM-dd'))
-    $content = $content.Replace('[EXTRACTED FROM ALL PLAN.MD FILES]', "- $newLang + $newFramework ($currentBranch)")
-    if ($newProjectType -match 'web') { $structure = "backend/`nfrontend/`ntests/" } else { $structure = "src/`ntests/" }
-    $content = $content.Replace('[ACTUAL STRUCTURE FROM PLANS]', $structure)
-    if ($newLang -match 'Python') { $commands = 'cd src && pytest && ruff check .' }
-    elseif ($newLang -match 'Rust') { $commands = 'cargo test && cargo clippy' }
-    elseif ($newLang -match 'JavaScript|TypeScript') { $commands = 'npm test && npm run lint' }
-    else { $commands = "# Add commands for $newLang" }
-    $content = $content.Replace('[ONLY COMMANDS FOR ACTIVE TECHNOLOGIES]', $commands)
-    $content = $content.Replace('[LANGUAGE-SPECIFIC, ONLY FOR LANGUAGES IN USE]', "${newLang}: Follow standard conventions")
-    $content = $content.Replace('[LAST 3 FEATURES AND WHAT THEY ADDED]', "- ${currentBranch}: Added ${newLang} + ${newFramework}")
-    $content | Set-Content $targetFile -Encoding UTF8
+function Write-Success { 
+    param(
+        [Parameter(Mandatory=$true)]
+        [string]$Message
+    )
+    Write-Host "$([char]0x2713) $Message" 
 }

-function Update-AgentFile($targetFile, $agentName) {
-    if (-not (Test-Path $targetFile)) { Initialize-AgentFile $targetFile $agentName; return }
-    $content = Get-Content $targetFile -Raw
-    if ($newLang -and ($content -notmatch [regex]::Escape($newLang))) { $content = $content -replace '(## Active Technologies\n)', "`$1- $newLang + $newFramework ($currentBranch)`n" }
-    if ($newDb -and $newDb -ne 'N/A' -and ($content -notmatch [regex]::Escape($newDb))) { $content = $content -replace '(## Active Technologies\n)', "`$1- $newDb ($currentBranch)`n" }
-    if ($content -match '## Recent Changes\n([\s\S]*?)(\n\n|$)') {
-        $changesBlock = $matches[1].Trim().Split("`n")
-    $changesBlock = ,"- ${currentBranch}: Added ${newLang} + ${newFramework}" + $changesBlock
-        $changesBlock = $changesBlock | Where-Object { $_ } | Select-Object -First 3
-        $joined = ($changesBlock -join "`n")
-        $content = [regex]::Replace($content, '## Recent Changes\n([\s\S]*?)(\n\n|$)', "## Recent Changes`n$joined`n`n")
-    }
-    $content = [regex]::Replace($content, 'Last updated: \d{4}-\d{2}-\d{2}', "Last updated: $(Get-Date -Format 'yyyy-MM-dd')")
-    $content | Set-Content $targetFile -Encoding UTF8
-    Write-Output "✅ $agentName context file updated successfully"
+function Write-WarningMsg { 
+    param(
+        [Parameter(Mandatory=$true)]
+        [string]$Message
+    )
+    Write-Warning $Message 
 }

-switch ($AgentType) {
-    'claude' { Update-AgentFile $claudeFile 'Claude Code' }
-    'gemini' { Update-AgentFile $geminiFile 'Gemini CLI' }
-    'copilot' { Update-AgentFile $copilotFile 'GitHub Copilot' }
-    'cursor' { Update-AgentFile $cursorFile 'Cursor IDE' }
-    'qwen' { Update-AgentFile $qwenFile 'Qwen Code' }
-    'opencode' { Update-AgentFile $agentsFile 'opencode' }
-    'windsurf' { Update-AgentFile $windsurfFile 'Windsurf' }
-    'codex'    { Update-AgentFile $agentsFile 'Codex CLI' }
-    '' {
-        foreach ($pair in @(
-            @{file=$claudeFile; name='Claude Code'},
-            @{file=$geminiFile; name='Gemini CLI'},
-            @{file=$copilotFile; name='GitHub Copilot'},
-            @{file=$cursorFile; name='Cursor IDE'},
-            @{file=$qwenFile; name='Qwen Code'},
-            @{file=$agentsFile; name='opencode'},
-            @{file=$windsurfFile; name='Windsurf'},
-            @{file=$agentsFile; name='Codex CLI'}
-        )) {
-            if (Test-Path $pair.file) { Update-AgentFile $pair.file $pair.name }
-        }
-        if (-not (Test-Path $claudeFile) -and -not (Test-Path $geminiFile) -and -not (Test-Path $copilotFile) -and -not (Test-Path $cursorFile) -and -not (Test-Path $qwenFile) -and -not (Test-Path $agentsFile) -and -not (Test-Path $windsurfFile)) {
-            Write-Output 'No agent context files found. Creating Claude Code context file by default.'
-            Update-AgentFile $claudeFile 'Claude Code'
-        }
-    }
-    Default { Write-Error "ERROR: Unknown agent type '$AgentType'. Use: claude, gemini, copilot, cursor, qwen, opencode, windsurf, codex or leave empty for all."; exit 1 }
+function Write-Err { 
+    param(
+        [Parameter(Mandatory=$true)]
+        [string]$Message
+    )
+    Write-Host "ERROR: $Message" -ForegroundColor Red 
 }

-Write-Output ''
-Write-Output 'Summary of changes:'
-if ($newLang) { Write-Output "- Added language: $newLang" }
-if ($newFramework) { Write-Output "- Added framework: $newFramework" }
-if ($newDb -and $newDb -ne 'N/A') { Write-Output "- Added database: $newDb" }
+function Validate-Environment {
+    if (-not $CURRENT_BRANCH) {
+        Write-Err 'Unable to determine current feature'
+        if ($HAS_GIT) { Write-Info "Make sure you're on a feature branch" } else { Write-Info 'Set SPECIFY_FEATURE environment variable or create a feature first' }
+        exit 1
+    }
+    if (-not (Test-Path $NEW_PLAN)) {
+        Write-Err "No plan.md found at $NEW_PLAN"
+        Write-Info 'Ensure you are working on a feature with a corresponding spec directory'
+        if (-not $HAS_GIT) { Write-Info 'Use: $env:SPECIFY_FEATURE=your-feature-name or create a new feature first' }
+        exit 1
+    }
+    if (-not (Test-Path $TEMPLATE_FILE)) {
+        Write-Err "Template file not found at $TEMPLATE_FILE"
+        Write-Info 'Run specify init to scaffold .specify/templates, or add agent-file-template.md there.'
+        exit 1
+    }
+}

-Write-Output ''
-Write-Output 'Usage: ./update-agent-context.ps1 [claude|gemini|copilot|cursor|qwen|opencode|windsurf|codex]'
+function Extract-PlanField {
+    param(
+        [Parameter(Mandatory=$true)]
+        [string]$FieldPattern,
+        [Parameter(Mandatory=$true)]
+        [string]$PlanFile
+    )
+    if (-not (Test-Path $PlanFile)) { return '' }
+    # Lines like **Language/Version**: Python 3.12
+    $regex = "^\*\*$([Regex]::Escape($FieldPattern))\*\*: (.+)$"
+    Get-Content -LiteralPath $PlanFile | ForEach-Object {
+        if ($_ -match $regex) { 
+            $val = $Matches[1].Trim()
+            if ($val -notin @('NEEDS CLARIFICATION','N/A')) { return $val }
+        }
+    } | Select-Object -First 1
+}
+
+function Parse-PlanData {
+    param(
+        [Parameter(Mandatory=$true)]
+        [string]$PlanFile
+    )
+    if (-not (Test-Path $PlanFile)) { Write-Err "Plan file not found: $PlanFile"; return $false }
+    Write-Info "Parsing plan data from $PlanFile"
+    $script:NEW_LANG        = Extract-PlanField -FieldPattern 'Language/Version' -PlanFile $PlanFile
+    $script:NEW_FRAMEWORK   = Extract-PlanField -FieldPattern 'Primary Dependencies' -PlanFile $PlanFile
+    $script:NEW_DB          = Extract-PlanField -FieldPattern 'Storage' -PlanFile $PlanFile
+    $script:NEW_PROJECT_TYPE = Extract-PlanField -FieldPattern 'Project Type' -PlanFile $PlanFile
+
+    if ($NEW_LANG) { Write-Info "Found language: $NEW_LANG" } else { Write-WarningMsg 'No language information found in plan' }
+    if ($NEW_FRAMEWORK) { Write-Info "Found framework: $NEW_FRAMEWORK" }
+    if ($NEW_DB -and $NEW_DB -ne 'N/A') { Write-Info "Found database: $NEW_DB" }
+    if ($NEW_PROJECT_TYPE) { Write-Info "Found project type: $NEW_PROJECT_TYPE" }
+    return $true
+}
+
+function Format-TechnologyStack {
+    param(
+        [Parameter(Mandatory=$false)]
+        [string]$Lang,
+        [Parameter(Mandatory=$false)]
+        [string]$Framework
+    )
+    $parts = @()
+    if ($Lang -and $Lang -ne 'NEEDS CLARIFICATION') { $parts += $Lang }
+    if ($Framework -and $Framework -notin @('NEEDS CLARIFICATION','N/A')) { $parts += $Framework }
+    if (-not $parts) { return '' }
+    return ($parts -join ' + ')
+}
+
+function Get-ProjectStructure { 
+    param(
+        [Parameter(Mandatory=$false)]
+        [string]$ProjectType
+    )
+    if ($ProjectType -match 'web') { return "backend/`nfrontend/`ntests/" } else { return "src/`ntests/" } 
+}
+
+function Get-CommandsForLanguage { 
+    param(
+        [Parameter(Mandatory=$false)]
+        [string]$Lang
+    )
+    switch -Regex ($Lang) {
+        'Python' { return "cd src; pytest; ruff check ." }
+        'Rust' { return "cargo test; cargo clippy" }
+        'JavaScript|TypeScript' { return "npm test; npm run lint" }
+        default { return "# Add commands for $Lang" }
+    }
+}
+
+function Get-LanguageConventions { 
+    param(
+        [Parameter(Mandatory=$false)]
+        [string]$Lang
+    )
+    if ($Lang) { "${Lang}: Follow standard conventions" } else { 'General: Follow standard conventions' } 
+}
+
+function New-AgentFile {
+    param(
+        [Parameter(Mandatory=$true)]
+        [string]$TargetFile,
+        [Parameter(Mandatory=$true)]
+        [string]$ProjectName,
+        [Parameter(Mandatory=$true)]
+        [datetime]$Date
+    )
+    if (-not (Test-Path $TEMPLATE_FILE)) { Write-Err "Template not found at $TEMPLATE_FILE"; return $false }
+    $temp = New-TemporaryFile
+    Copy-Item -LiteralPath $TEMPLATE_FILE -Destination $temp -Force
+
+    $projectStructure = Get-ProjectStructure -ProjectType $NEW_PROJECT_TYPE
+    $commands = Get-CommandsForLanguage -Lang $NEW_LANG
+    $languageConventions = Get-LanguageConventions -Lang $NEW_LANG
+
+    $escaped_lang = $NEW_LANG
+    $escaped_framework = $NEW_FRAMEWORK
+    $escaped_branch = $CURRENT_BRANCH
+
+    $content = Get-Content -LiteralPath $temp -Raw
+    $content = $content -replace '\[PROJECT NAME\]',$ProjectName
+    $content = $content -replace '\[DATE\]',$Date.ToString('yyyy-MM-dd')
+    
+    # Build the technology stack string safely
+    $techStackForTemplate = ""
+    if ($escaped_lang -and $escaped_framework) {
+        $techStackForTemplate = "- $escaped_lang + $escaped_framework ($escaped_branch)"
+    } elseif ($escaped_lang) {
+        $techStackForTemplate = "- $escaped_lang ($escaped_branch)"
+    } elseif ($escaped_framework) {
+        $techStackForTemplate = "- $escaped_framework ($escaped_branch)"
+    }
+    
+    $content = $content -replace '\[EXTRACTED FROM ALL PLAN.MD FILES\]',$techStackForTemplate
+    # For project structure we manually embed (keep newlines)
+    $escapedStructure = [Regex]::Escape($projectStructure)
+    $content = $content -replace '\[ACTUAL STRUCTURE FROM PLANS\]',$escapedStructure
+    # Replace escaped newlines placeholder after all replacements
+    $content = $content -replace '\[ONLY COMMANDS FOR ACTIVE TECHNOLOGIES\]',$commands
+    $content = $content -replace '\[LANGUAGE-SPECIFIC, ONLY FOR LANGUAGES IN USE\]',$languageConventions
+    
+    # Build the recent changes string safely
+    $recentChangesForTemplate = ""
+    if ($escaped_lang -and $escaped_framework) {
+        $recentChangesForTemplate = "- ${escaped_branch}: Added ${escaped_lang} + ${escaped_framework}"
+    } elseif ($escaped_lang) {
+        $recentChangesForTemplate = "- ${escaped_branch}: Added ${escaped_lang}"
+    } elseif ($escaped_framework) {
+        $recentChangesForTemplate = "- ${escaped_branch}: Added ${escaped_framework}"
+    }
+    
+    $content = $content -replace '\[LAST 3 FEATURES AND WHAT THEY ADDED\]',$recentChangesForTemplate
+    # Convert literal \n sequences introduced by Escape to real newlines
+    $content = $content -replace '\\n',[Environment]::NewLine
+
+    $parent = Split-Path -Parent $TargetFile
+    if (-not (Test-Path $parent)) { New-Item -ItemType Directory -Path $parent | Out-Null }
+    Set-Content -LiteralPath $TargetFile -Value $content -NoNewline
+    Remove-Item $temp -Force
+    return $true
+}
+
+function Update-ExistingAgentFile {
+    param(
+        [Parameter(Mandatory=$true)]
+        [string]$TargetFile,
+        [Parameter(Mandatory=$true)]
+        [datetime]$Date
+    )
+    if (-not (Test-Path $TargetFile)) { return (New-AgentFile -TargetFile $TargetFile -ProjectName (Split-Path $REPO_ROOT -Leaf) -Date $Date) }
+
+    $techStack = Format-TechnologyStack -Lang $NEW_LANG -Framework $NEW_FRAMEWORK
+    $newTechEntries = @()
+    if ($techStack) {
+        $escapedTechStack = [Regex]::Escape($techStack)
+        if (-not (Select-String -Pattern $escapedTechStack -Path $TargetFile -Quiet)) { 
+            $newTechEntries += "- $techStack ($CURRENT_BRANCH)" 
+        }
+    }
+    if ($NEW_DB -and $NEW_DB -notin @('N/A','NEEDS CLARIFICATION')) {
+        $escapedDB = [Regex]::Escape($NEW_DB)
+        if (-not (Select-String -Pattern $escapedDB -Path $TargetFile -Quiet)) { 
+            $newTechEntries += "- $NEW_DB ($CURRENT_BRANCH)" 
+        }
+    }
+    $newChangeEntry = ''
+    if ($techStack) { $newChangeEntry = "- ${CURRENT_BRANCH}: Added ${techStack}" }
+    elseif ($NEW_DB -and $NEW_DB -notin @('N/A','NEEDS CLARIFICATION')) { $newChangeEntry = "- ${CURRENT_BRANCH}: Added ${NEW_DB}" }
+
+    $lines = Get-Content -LiteralPath $TargetFile
+    $output = New-Object System.Collections.Generic.List[string]
+    $inTech = $false; $inChanges = $false; $techAdded = $false; $changeAdded = $false; $existingChanges = 0
+
+    for ($i=0; $i -lt $lines.Count; $i++) {
+        $line = $lines[$i]
+        if ($line -eq '## Active Technologies') {
+            $output.Add($line)
+            $inTech = $true
+            continue
+        }
+        if ($inTech -and $line -match '^##\s') {
+            if (-not $techAdded -and $newTechEntries.Count -gt 0) { $newTechEntries | ForEach-Object { $output.Add($_) }; $techAdded = $true }
+            $output.Add($line); $inTech = $false; continue
+        }
+        if ($inTech -and [string]::IsNullOrWhiteSpace($line)) {
+            if (-not $techAdded -and $newTechEntries.Count -gt 0) { $newTechEntries | ForEach-Object { $output.Add($_) }; $techAdded = $true }
+            $output.Add($line); continue
+        }
+        if ($line -eq '## Recent Changes') {
+            $output.Add($line)
+            if ($newChangeEntry) { $output.Add($newChangeEntry); $changeAdded = $true }
+            $inChanges = $true
+            continue
+        }
+        if ($inChanges -and $line -match '^##\s') { $output.Add($line); $inChanges = $false; continue }
+        if ($inChanges -and $line -match '^- ') {
+            if ($existingChanges -lt 2) { $output.Add($line); $existingChanges++ }
+            continue
+        }
+        if ($line -match '\*\*Last updated\*\*: .*\d{4}-\d{2}-\d{2}') {
+            $output.Add(($line -replace '\d{4}-\d{2}-\d{2}',$Date.ToString('yyyy-MM-dd')))
+            continue
+        }
+        $output.Add($line)
+    }
+
+    # Post-loop check: if we're still in the Active Technologies section and haven't added new entries
+    if ($inTech -and -not $techAdded -and $newTechEntries.Count -gt 0) {
+        $newTechEntries | ForEach-Object { $output.Add($_) }
+    }
+
+    Set-Content -LiteralPath $TargetFile -Value ($output -join [Environment]::NewLine)
+    return $true
+}
+
+function Update-AgentFile {
+    param(
+        [Parameter(Mandatory=$true)]
+        [string]$TargetFile,
+        [Parameter(Mandatory=$true)]
+        [string]$AgentName
+    )
+    if (-not $TargetFile -or -not $AgentName) { Write-Err 'Update-AgentFile requires TargetFile and AgentName'; return $false }
+    Write-Info "Updating $AgentName context file: $TargetFile"
+    $projectName = Split-Path $REPO_ROOT -Leaf
+    $date = Get-Date
+
+    $dir = Split-Path -Parent $TargetFile
+    if (-not (Test-Path $dir)) { New-Item -ItemType Directory -Path $dir | Out-Null }
+
+    if (-not (Test-Path $TargetFile)) {
+        if (New-AgentFile -TargetFile $TargetFile -ProjectName $projectName -Date $date) { Write-Success "Created new $AgentName context file" } else { Write-Err 'Failed to create new agent file'; return $false }
+    } else {
+        try {
+            if (Update-ExistingAgentFile -TargetFile $TargetFile -Date $date) { Write-Success "Updated existing $AgentName context file" } else { Write-Err 'Failed to update agent file'; return $false }
+        } catch {
+            Write-Err "Cannot access or update existing file: $TargetFile. $_"
+            return $false
+        }
+    }
+    return $true
+}
+
+function Update-SpecificAgent {
+    param(
+        [Parameter(Mandatory=$true)]
+        [string]$Type
+    )
+    switch ($Type) {
+        'claude'   { Update-AgentFile -TargetFile $CLAUDE_FILE   -AgentName 'Claude Code' }
+        'gemini'   { Update-AgentFile -TargetFile $GEMINI_FILE   -AgentName 'Gemini CLI' }
+        'copilot'  { Update-AgentFile -TargetFile $COPILOT_FILE  -AgentName 'GitHub Copilot' }
+        'cursor'   { Update-AgentFile -TargetFile $CURSOR_FILE   -AgentName 'Cursor IDE' }
+        'qwen'     { Update-AgentFile -TargetFile $QWEN_FILE     -AgentName 'Qwen Code' }
+        'opencode' { Update-AgentFile -TargetFile $AGENTS_FILE   -AgentName 'opencode' }
+        'codex'    { Update-AgentFile -TargetFile $AGENTS_FILE   -AgentName 'Codex CLI' }
+        'windsurf' { Update-AgentFile -TargetFile $WINDSURF_FILE -AgentName 'Windsurf' }
+        'kilocode' { Update-AgentFile -TargetFile $KILOCODE_FILE -AgentName 'Kilo Code' }
+        'auggie'   { Update-AgentFile -TargetFile $AUGGIE_FILE   -AgentName 'Auggie CLI' }
+        'roo'      { Update-AgentFile -TargetFile $ROO_FILE      -AgentName 'Roo Code' }
+        default { Write-Err "Unknown agent type '$Type'"; Write-Err 'Expected: claude|gemini|copilot|cursor|qwen|opencode|codex|windsurf|kilocode|auggie|roo'; return $false }
+    }
+}
+
+function Update-AllExistingAgents {
+    $found = $false
+    $ok = $true
+    if (Test-Path $CLAUDE_FILE)   { if (-not (Update-AgentFile -TargetFile $CLAUDE_FILE   -AgentName 'Claude Code')) { $ok = $false }; $found = $true }
+    if (Test-Path $GEMINI_FILE)   { if (-not (Update-AgentFile -TargetFile $GEMINI_FILE   -AgentName 'Gemini CLI')) { $ok = $false }; $found = $true }
+    if (Test-Path $COPILOT_FILE)  { if (-not (Update-AgentFile -TargetFile $COPILOT_FILE  -AgentName 'GitHub Copilot')) { $ok = $false }; $found = $true }
+    if (Test-Path $CURSOR_FILE)   { if (-not (Update-AgentFile -TargetFile $CURSOR_FILE   -AgentName 'Cursor IDE')) { $ok = $false }; $found = $true }
+    if (Test-Path $QWEN_FILE)     { if (-not (Update-AgentFile -TargetFile $QWEN_FILE     -AgentName 'Qwen Code')) { $ok = $false }; $found = $true }
+    if (Test-Path $AGENTS_FILE)   { if (-not (Update-AgentFile -TargetFile $AGENTS_FILE   -AgentName 'Codex/opencode')) { $ok = $false }; $found = $true }
+    if (Test-Path $WINDSURF_FILE) { if (-not (Update-AgentFile -TargetFile $WINDSURF_FILE -AgentName 'Windsurf')) { $ok = $false }; $found = $true }
+    if (Test-Path $KILOCODE_FILE) { if (-not (Update-AgentFile -TargetFile $KILOCODE_FILE -AgentName 'Kilo Code')) { $ok = $false }; $found = $true }
+    if (Test-Path $AUGGIE_FILE)   { if (-not (Update-AgentFile -TargetFile $AUGGIE_FILE   -AgentName 'Auggie CLI')) { $ok = $false }; $found = $true }
+    if (Test-Path $ROO_FILE)      { if (-not (Update-AgentFile -TargetFile $ROO_FILE      -AgentName 'Roo Code')) { $ok = $false }; $found = $true }
+    if (-not $found) {
+        Write-Info 'No existing agent files found, creating default Claude file...'
+        if (-not (Update-AgentFile -TargetFile $CLAUDE_FILE -AgentName 'Claude Code')) { $ok = $false }
+    }
+    return $ok
+}
+
+function Print-Summary {
+    Write-Host ''
+    Write-Info 'Summary of changes:'
+    if ($NEW_LANG) { Write-Host "  - Added language: $NEW_LANG" }
+    if ($NEW_FRAMEWORK) { Write-Host "  - Added framework: $NEW_FRAMEWORK" }
+    if ($NEW_DB -and $NEW_DB -ne 'N/A') { Write-Host "  - Added database: $NEW_DB" }
+    Write-Host ''
+    Write-Info 'Usage: ./update-agent-context.ps1 [-AgentType claude|gemini|copilot|cursor|qwen|opencode|codex|windsurf|kilocode|auggie|roo]'
+}
+
+function Main {
+    Validate-Environment
+    Write-Info "=== Updating agent context files for feature $CURRENT_BRANCH ==="
+    if (-not (Parse-PlanData -PlanFile $NEW_PLAN)) { Write-Err 'Failed to parse plan data'; exit 1 }
+    $success = $true
+    if ($AgentType) {
+        Write-Info "Updating specific agent: $AgentType"
+        if (-not (Update-SpecificAgent -Type $AgentType)) { $success = $false }
+    }
+    else {
+        Write-Info 'No agent specified, updating all existing agent files...'
+        if (-not (Update-AllExistingAgents)) { $success = $false }
+    }
+    Print-Summary
+    if ($success) { Write-Success 'Agent context update completed successfully'; exit 0 } else { Write-Err 'Agent context update completed with errors'; exit 1 }
+}
+
+Main
--- a/src/specify_cli/init.py
+++ b/src/specify_cli/init.py
@@ -28,6 +28,7 @@ import sys
 import zipfile
 import tempfile
 import shutil
+import shlex
 import json
 from pathlib import Path
 from typing import Optional, Tuple
@@ -71,6 +72,9 @@ AI_CHOICES = {
    "opencode": "opencode",
    "codex": "Codex CLI",
    "windsurf": "Windsurf",
+    "kilocode": "Kilo Code",
+    "auggie": "Auggie CLI",
+    "roo": "Roo Code",
 }
 # Add script type choices
 SCRIPT_TYPE_CHOICES = {"sh": "POSIX Shell (bash/zsh)", "ps": "PowerShell"}
@@ -354,13 +358,13 @@ def run_command(cmd: list[str], check_return: bool = True, capture: bool = False
        return None


-def check_tool_for_tracker(tool: str, install_hint: str, tracker: StepTracker) -> bool:
+def check_tool_for_tracker(tool: str, tracker: StepTracker) -> bool:
    """Check if a tool is installed and update tracker."""
    if shutil.which(tool):
        tracker.complete(tool, "available")
        return True
    else:
-        tracker.error(tool, f"not found - {install_hint}")
+        tracker.error(tool, "not found")
        return False


@@ -379,8 +383,6 @@ def check_tool(tool: str, install_hint: str) -> bool:
    if shutil.which(tool):
        return True
    else:
-        console.print(f"[yellow]⚠️  {tool} not found[/yellow]")
-        console.print(f"   Install with: [cyan]{install_hint}[/cyan]")
        return False


@@ -746,11 +748,12 @@ def ensure_executable_scripts(project_path: Path, tracker: StepTracker | None =
@app.command()
 def init(
    project_name: str = typer.Argument(None, help="Name for your new project directory (optional if using --here)"),
-    ai_assistant: str = typer.Option(None, "--ai", help="AI assistant to use: claude, gemini, copilot, cursor, qwen, opencode, codex, or windsurf"),
+    ai_assistant: str = typer.Option(None, "--ai", help="AI assistant to use: claude, gemini, copilot, cursor, qwen, opencode, codex, windsurf, kilocode, or auggie"),
    script_type: str = typer.Option(None, "--script", help="Script type to use: sh or ps"),
    ignore_agent_tools: bool = typer.Option(False, "--ignore-agent-tools", help="Skip checks for AI agent tools like Claude Code"),
    no_git: bool = typer.Option(False, "--no-git", help="Skip git repository initialization"),
    here: bool = typer.Option(False, "--here", help="Initialize project in the current directory instead of creating a new one"),
+    force: bool = typer.Option(False, "--force", help="Force merge/overwrite when using --here (skip confirmation)"),
    skip_tls: bool = typer.Option(False, "--skip-tls", help="Skip SSL/TLS verification (not recommended)"),
    debug: bool = typer.Option(False, "--debug", help="Show verbose diagnostic output for network and extraction failures"),
    github_token: str = typer.Option(None, "--github-token", help="GitHub token to use for API requests (or set GH_TOKEN or GITHUB_TOKEN environment variable)"),
@@ -760,7 +763,7 @@ def init(
    
    This command will:
    1. Check that required tools are installed (git is optional)
-    2. Let you choose your AI assistant (Claude Code, Gemini CLI, GitHub Copilot, Cursor, Qwen Code, opencode, Codex CLI, or Windsurf)
+    2. Let you choose your AI assistant (Claude Code, Gemini CLI, GitHub Copilot, Cursor, Qwen Code, opencode, Codex CLI, Windsurf, Kilo Code, or Auggie CLI)
    3. Download the appropriate template from GitHub
    4. Extract the template to a new project directory or current directory
    5. Initialize a fresh git repository (if not --no-git and no existing repo)
@@ -776,10 +779,12 @@ def init(
        specify init my-project --ai opencode
        specify init my-project --ai codex
        specify init my-project --ai windsurf
+        specify init my-project --ai auggie
        specify init --ignore-agent-tools my-project
        specify init --here --ai claude
        specify init --here --ai codex
        specify init --here
+        specify init --here --force  # Skip confirmation when current directory not empty
    """
    # Show banner first
    show_banner()
@@ -803,7 +808,9 @@ def init(
        if existing_items:
            console.print(f"[yellow]Warning:[/yellow] Current directory is not empty ({len(existing_items)} items)")
            console.print("[yellow]Template files will be merged with existing content and may overwrite existing files[/yellow]")
-            
+            if force:
+                console.print("[cyan]--force supplied: skipping confirmation and proceeding with merge[/cyan]")
+            else:
                # Ask for confirmation
                response = typer.confirm("Do you want to continue?")
                if not response:
@@ -813,7 +820,15 @@ def init(
        project_path = Path(project_name).resolve()
        # Check if project directory already exists
        if project_path.exists():
-            console.print(f"[red]Error:[/red] Directory '{project_name}' already exists")
+            error_panel = Panel(
+                f"Directory '[cyan]{project_name}[/cyan]' already exists\n"
+                "Please choose a different project name or remove the existing directory.",
+                title="[red]Directory Conflict[/red]",
+                border_style="red",
+                padding=(1, 2)
+            )
+            console.print()
+            console.print(error_panel)
            raise typer.Exit(1)
    
    # Create formatted setup info with column alignment
@@ -857,31 +872,45 @@ def init(
    # Check agent tools unless ignored
    if not ignore_agent_tools:
        agent_tool_missing = False
+        install_url = ""
        if selected_ai == "claude":
-            if not check_tool("claude", "Install from: https://docs.anthropic.com/en/docs/claude-code/setup"):
-                console.print("[red]Error:[/red] Claude CLI is required for Claude Code projects")
+            if not check_tool("claude", "https://docs.anthropic.com/en/docs/claude-code/setup"):
+                install_url = "https://docs.anthropic.com/en/docs/claude-code/setup"
                agent_tool_missing = True
        elif selected_ai == "gemini":
-            if not check_tool("gemini", "Install from: https://github.com/google-gemini/gemini-cli"):
-                console.print("[red]Error:[/red] Gemini CLI is required for Gemini projects")
+            if not check_tool("gemini", "https://github.com/google-gemini/gemini-cli"):
+                install_url = "https://github.com/google-gemini/gemini-cli"
                agent_tool_missing = True
        elif selected_ai == "qwen":
-            if not check_tool("qwen", "Install from: https://github.com/QwenLM/qwen-code"):
-                console.print("[red]Error:[/red] Qwen CLI is required for Qwen Code projects")
+            if not check_tool("qwen", "https://github.com/QwenLM/qwen-code"):
+                install_url = "https://github.com/QwenLM/qwen-code"
                agent_tool_missing = True
        elif selected_ai == "opencode":
-            if not check_tool("opencode", "Install from: https://opencode.ai"):
-                console.print("[red]Error:[/red] opencode CLI is required for opencode projects")
+            if not check_tool("opencode", "https://opencode.ai"):
+                install_url = "https://opencode.ai"
                agent_tool_missing = True
        elif selected_ai == "codex":
-            if not check_tool("codex", "Install from: https://github.com/openai/codex"):
-                console.print("[red]Error:[/red] Codex CLI is required for Codex projects")
+            if not check_tool("codex", "https://github.com/openai/codex"):
+                install_url = "https://github.com/openai/codex"
+                agent_tool_missing = True
+        elif selected_ai == "auggie":
+            if not check_tool("auggie", "https://docs.augmentcode.com/cli/setup-auggie/install-auggie-cli"):
+                install_url = "https://docs.augmentcode.com/cli/setup-auggie/install-auggie-cli"
                agent_tool_missing = True
        # GitHub Copilot and Cursor checks are not needed as they're typically available in supported IDEs

        if agent_tool_missing:
-            console.print("\n[red]Required AI tool is missing![/red]")
-            console.print("[yellow]Tip:[/yellow] Use --ignore-agent-tools to skip this check")
+            error_panel = Panel(
+                f"[cyan]{selected_ai}[/cyan] not found\n"
+                f"Install with: [cyan]{install_url}[/cyan]\n"
+                f"{AI_CHOICES[selected_ai]} is required to continue with this project type.\n\n"
+                "Tip: Use [cyan]--ignore-agent-tools[/cyan] to skip this check",
+                title="[red]Agent Detection Error[/red]",
+                border_style="red",
+                padding=(1, 2)
+            )
+            console.print()
+            console.print(error_panel)
            raise typer.Exit(1)
    
    # Determine script type (explicit, interactive, or OS default)
@@ -980,15 +1009,54 @@ def init(
    console.print(tracker.render())
    console.print("\n[bold green]Project ready.[/bold green]")
    
+    # Agent folder security notice
+    agent_folder_map = {
+        "claude": ".claude/",
+        "gemini": ".gemini/",
+        "cursor": ".cursor/",
+        "qwen": ".qwen/",
+        "opencode": ".opencode/",
+        "codex": ".codex/",
+        "windsurf": ".windsurf/",
+        "kilocode": ".kilocode/",
+        "auggie": ".augment/",
+        "copilot": ".github/",
+        "roo": ".roo/"
+    }
+    
+    if selected_ai in agent_folder_map:
+        agent_folder = agent_folder_map[selected_ai]
+        security_notice = Panel(
+            f"Some agents may store credentials, auth tokens, or other identifying and private artifacts in the agent folder within your project.\n"
+            f"Consider adding [cyan]{agent_folder}[/cyan] (or parts of it) to [cyan].gitignore[/cyan] to prevent accidental credential leakage.",
+            title="[yellow]Agent Folder Security[/yellow]",
+            border_style="yellow",
+            padding=(1, 2)
+        )
+        console.print()
+        console.print(security_notice)
+    
    # Boxed "Next steps" section
    steps_lines = []
    if not here:
-        steps_lines.append(f"1. [bold green]cd {project_name}[/bold green]")
+        steps_lines.append(f"1. Go to the project folder: [cyan]cd {project_name}[/cyan]")
        step_num = 2
    else:
        steps_lines.append("1. You're already in the project directory!")
        step_num = 2

+    # Add Codex-specific setup step if needed
+    if selected_ai == "codex":
+        codex_path = project_path / ".codex"
+        quoted_path = shlex.quote(str(codex_path))
+        if os.name == "nt":  # Windows
+            cmd = f"setx CODEX_HOME {quoted_path}"
+        else:  # Unix-like systems
+            cmd = f"export CODEX_HOME={quoted_path}"
+        
+        steps_lines.append(f"{step_num}. Set [cyan]CODEX_HOME[/cyan] environment variable before running Codex: [cyan]{cmd}[/cyan]")
+        step_num += 1
+
    steps_lines.append(f"{step_num}. Start using slash commands with your AI agent:")
    steps_lines.append("   2.1 [cyan]/constitution[/] - Establish project principles")
    steps_lines.append("   2.2 [cyan]/specify[/] - Create specifications")
@@ -996,10 +1064,21 @@ def init(
    steps_lines.append("   2.4 [cyan]/tasks[/] - Generate actionable tasks")
    steps_lines.append("   2.5 [cyan]/implement[/] - Execute implementation")

-    steps_panel = Panel("\n".join(steps_lines), title="Next steps", border_style="cyan", padding=(1,2))
+    steps_panel = Panel("\n".join(steps_lines), title="Next Steps", border_style="cyan", padding=(1,2))
    console.print()
    console.print(steps_panel)

+    if selected_ai == "codex":
+        warning_text = """[bold yellow]Important Note:[/bold yellow]
+
+Custom prompts do not yet support arguments in Codex. You may need to manually specify additional project instructions directly in prompt files located in [cyan].codex/prompts/[/cyan].
+
+For more information, see: [cyan]https://github.com/openai/codex/issues/2890[/cyan]"""
+        
+        warning_panel = Panel(warning_text, title="Slash Commands in Codex", border_style="yellow", padding=(1,2))
+        console.print()
+        console.print(warning_panel)
+
@app.command()
 def check():
    """Check that all required tools are installed."""
@@ -1012,23 +1091,27 @@ def check():
    tracker.add("claude", "Claude Code CLI")
    tracker.add("gemini", "Gemini CLI")
    tracker.add("qwen", "Qwen Code CLI")
-    tracker.add("code", "VS Code (for GitHub Copilot)")
-    tracker.add("cursor-agent", "Cursor IDE agent (optional)")
-    tracker.add("windsurf", "Windsurf IDE (optional)")
+    tracker.add("code", "Visual Studio Code")
+    tracker.add("code-insiders", "Visual Studio Code Insiders")
+    tracker.add("cursor-agent", "Cursor IDE agent")
+    tracker.add("windsurf", "Windsurf IDE")
+    tracker.add("kilocode", "Kilo Code IDE")
    tracker.add("opencode", "opencode")
    tracker.add("codex", "Codex CLI")
+    tracker.add("auggie", "Auggie CLI")
    
-    git_ok = check_tool_for_tracker("git", "https://git-scm.com/downloads", tracker)
-    claude_ok = check_tool_for_tracker("claude", "https://docs.anthropic.com/en/docs/claude-code/setup", tracker)  
-    gemini_ok = check_tool_for_tracker("gemini", "https://github.com/google-gemini/gemini-cli", tracker)
-    qwen_ok = check_tool_for_tracker("qwen", "https://github.com/QwenLM/qwen-code", tracker)
-    code_ok = check_tool_for_tracker("code", "https://code.visualstudio.com/", tracker)
-    if not code_ok:
-        code_ok = check_tool_for_tracker("code-insiders", "https://code.visualstudio.com/insiders/", tracker)
-    cursor_ok = check_tool_for_tracker("cursor-agent", "https://cursor.sh/", tracker)
-    windsurf_ok = check_tool_for_tracker("windsurf", "https://windsurf.com/", tracker)
-    opencode_ok = check_tool_for_tracker("opencode", "https://opencode.ai/", tracker)
-    codex_ok = check_tool_for_tracker("codex", "https://github.com/openai/codex", tracker)
+    git_ok = check_tool_for_tracker("git", tracker)
+    claude_ok = check_tool_for_tracker("claude", tracker)  
+    gemini_ok = check_tool_for_tracker("gemini", tracker)
+    qwen_ok = check_tool_for_tracker("qwen", tracker)
+    code_ok = check_tool_for_tracker("code", tracker)
+    code_insiders_ok = check_tool_for_tracker("code-insiders", tracker)
+    cursor_ok = check_tool_for_tracker("cursor-agent", tracker)
+    windsurf_ok = check_tool_for_tracker("windsurf", tracker)
+    kilocode_ok = check_tool_for_tracker("kilocode", tracker)
+    opencode_ok = check_tool_for_tracker("opencode", tracker)
+    codex_ok = check_tool_for_tracker("codex", tracker)
+    auggie_ok = check_tool_for_tracker("auggie", tracker)

    console.print(tracker.render())

@@ -1036,7 +1119,7 @@ def check():

    if not git_ok:
        console.print("[dim]Tip: Install git for repository management[/dim]")
-    if not (claude_ok or gemini_ok or cursor_ok or qwen_ok or windsurf_ok or opencode_ok or codex_ok):
+    if not (claude_ok or gemini_ok or cursor_ok or qwen_ok or windsurf_ok or kilocode_ok or opencode_ok or codex_ok or auggie_ok):
        console.print("[dim]Tip: Install an AI assistant for the best experience[/dim]")


--- a/templates/commands/constitution.md
+++ b/templates/commands/constitution.md
@@ -1,8 +1,13 @@
 ---
 description: Create or update the project constitution from interactive or provided principle inputs, ensuring all dependent templates stay in sync.
-# (No scripts section: constitution edits are manual authoring assisted by the agent)
 ---

+The user input to you can be provided directly by the agent or as a command argument - you **MUST** consider it before proceeding with the prompt (if not empty).
+
+User input:
+
+$ARGUMENTS
+
 You are updating the project constitution at `/memory/constitution.md`. This file is a TEMPLATE containing placeholder tokens in square brackets (e.g. `[PROJECT_NAME]`, `[PRINCIPLE_1_NAME]`). Your job is to (a) collect/derive concrete values, (b) fill the template precisely, and (c) propagate any amendments across dependent artifacts.

 Follow this execution flow:
--- a/templates/commands/implement.md
+++ b/templates/commands/implement.md
@@ -1,11 +1,15 @@
 ---
 description: Execute the implementation plan by processing and executing all tasks defined in tasks.md
 scripts:
-  sh: scripts/bash/check-implementation-prerequisites.sh --json
-  ps: scripts/powershell/check-implementation-prerequisites.ps1 -Json
+  sh: scripts/bash/check-prerequisites.sh --json --require-tasks --include-tasks
+  ps: scripts/powershell/check-prerequisites.ps1 -Json -RequireTasks -IncludeTasks
 ---

-Given the current feature context, do this:
+The user input can be provided directly by the agent or as a command argument - you **MUST** consider it before proceeding with the prompt (if not empty).
+
+User input:
+
+$ARGUMENTS

 1. Run `{SCRIPT}` from repo root and parse FEATURE_DIR and AVAILABLE_DOCS list. All paths must be absolute.

--- a/templates/commands/plan.md
+++ b/templates/commands/plan.md
@@ -5,6 +5,12 @@ scripts:
  ps: scripts/powershell/setup-plan.ps1 -Json
 ---

+The user input to you can be provided directly by the agent or as a command argument - you **MUST** consider it before proceeding with the prompt (if not empty).
+
+User input:
+
+$ARGUMENTS
+
 Given the implementation details provided as an argument, do this:

 1. Run `{SCRIPT}` from the repo root and parse JSON for FEATURE_SPEC, IMPL_PLAN, SPECS_DIR, BRANCH. All future file paths must be absolute.
--- a/templates/commands/specify.md
+++ b/templates/commands/specify.md
@@ -5,6 +5,12 @@ scripts:
  ps: scripts/powershell/create-new-feature.ps1 -Json "{ARGS}"
 ---

+The user input to you can be provided directly by the agent or as a command argument - you **MUST** consider it before proceeding with the prompt (if not empty).
+
+User input:
+
+$ARGUMENTS
+
 The text the user typed after `/specify` in the triggering message **is** the feature description. Assume you always have it available in this conversation even if `{ARGS}` appears literally below. Do not ask the user to repeat it unless they provided an empty command.

 Given that feature description, do this:
--- a/templates/commands/tasks.md
+++ b/templates/commands/tasks.md
@@ -1,11 +1,15 @@
 ---
 description: Generate an actionable, dependency-ordered tasks.md for the feature based on available design artifacts.
 scripts:
-  sh: scripts/bash/check-task-prerequisites.sh --json
-  ps: scripts/powershell/check-task-prerequisites.ps1 -Json
+  sh: scripts/bash/check-prerequisites.sh --json
+  ps: scripts/powershell/check-prerequisites.ps1 -Json
 ---

-Given the context provided as an argument, do this:
+The user input to you can be provided directly by the agent or as a command argument - you **MUST** consider it before proceeding with the prompt (if not empty).
+
+User input:
+
+$ARGUMENTS

 1. Run `{SCRIPT}` from repo root and parse FEATURE_DIR and AVAILABLE_DOCS list. All paths must be absolute.
 2. Load and analyze available design documents:
--- a/templates/plan-template.md
+++ b/templates/plan-template.md
@@ -151,7 +151,8 @@ ios/ or android/
   - Quickstart test = story validation steps

 5. **Update agent file incrementally** (O(1) operation):
-   - Run `{SCRIPT}` for your AI assistant
+   - Run `{SCRIPT}`
+     **IMPORTANT**: Execute it exactly as specified above. Do not add or remove any arguments.
   - If exists: Add only NEW tech from current plan
   - Preserve manual additions between markers
   - Update recent changes (keep last 3)
Author	SHA1	Message	Date
den (work)	9319f0425e	Update with --force flag	2025-09-22 14:45:35 -07:00
Den Delimarsky	5d764e8364	Merge pull request #477 from spboyer/fix/add-uv-tool-install-instructions Add uv tool install instructions to README	2025-09-22 09:20:04 -07:00
Shayne Boyer	1db65aa6aa	feat: add uv tool install instructions to README - Add persistent installation option using 'uv tool install' - Keep existing 'uvx' one-time usage option - Add benefits section explaining advantages of persistent installation - Reorganize installation section with clear option headers Fixes #476	2025-09-22 11:08:25 -04:00
Den Delimarsky 🌺	9348c45f9e	Update with Roo Code support	2025-09-21 19:56:17 -07:00
Den Delimarsky 🌺	ad746ce35d	Update generate-release-notes.sh	2025-09-21 13:16:15 -07:00
Den Delimarsky 🌺	14ac43ba41	Update error messages	2025-09-21 13:12:49 -07:00
Den Delimarsky 🌺	0857f83de8	Auggie folder fix	2025-09-21 13:01:04 -07:00
Den Delimarsky	18236f27d6	Merge pull request #451 from github/spec-kit-vnext Spec Kit Improvements	2025-09-21 12:56:11 -07:00
Den Delimarsky	974347c758	Update scripts/powershell/update-agent-context.ps1 Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>	2025-09-21 12:55:46 -07:00
Den Delimarsky	e9aed2da44	Update templates/commands/implement.md Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>	2025-09-21 12:53:52 -07:00
Den Delimarsky 🌺	ecf1757672	Cleanup the check command	2025-09-21 12:53:35 -07:00
Den Delimarsky 🌺	ceba130e52	Add support for Auggie	2025-09-21 12:48:58 -07:00
Den Delimarsky 🌺	494cdede53	Update AGENTS.md	2025-09-21 12:32:45 -07:00
Den Delimarsky 🌺	bc896086f1	Merge branch 'spec-kit-vnext' of https://github.com/github/spec-kit into spec-kit-vnext	2025-09-21 12:32:19 -07:00
Den Delimarsky 🌺	dceb903804	Updates with Kilo Code support	2025-09-21 12:32:16 -07:00
Den Delimarsky	39b33ebd22	Update README.md Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>	2025-09-21 11:52:10 -07:00
Den Delimarsky	ef05d4846a	Update templates/commands/constitution.md Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>	2025-09-21 11:51:54 -07:00
Den Delimarsky	026aa69aad	Update templates/commands/implement.md Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>	2025-09-21 11:51:46 -07:00
Den Delimarsky	ebf53e10b3	Update templates/commands/plan.md Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>	2025-09-21 11:51:40 -07:00
Den Delimarsky	713af3c314	Update templates/commands/specify.md Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>	2025-09-21 11:51:32 -07:00
Den Delimarsky	33652bf143	Update templates/commands/tasks.md Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>	2025-09-21 11:51:24 -07:00
Den Delimarsky 🌺	cef4e8f495	Update README.md	2025-09-21 11:45:33 -07:00
Den Delimarsky 🌺	86aaf2daed	Stop splitting the warning over multiple lines	2025-09-21 11:42:22 -07:00
Den Delimarsky 🌺	c65b0fbb62	Update templates based on #419	2025-09-21 11:38:04 -07:00
Den Delimarsky	385d17c83c	Merge pull request #441 from Lucien-Liu/update-readme-check-command docs: Update README for codex in check command and --ai option	2025-09-21 01:52:33 -07:00
Den Delimarsky	1a84b4b23c	Merge pull request #406 from github/consolidate-scripts Update for better maintainability	2025-09-21 01:48:33 -07:00
Den Delimarsky	b03bba37ce	Update scripts/powershell/check-prerequisites.ps1 Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>	2025-09-21 01:48:21 -07:00
Den Delimarsky 🌺	2d89075106	Update CHANGELOG.md	2025-09-21 01:28:59 -07:00
Den Delimarsky 🌺	a810b1bd1a	Update CHANGELOG.md	2025-09-21 01:28:31 -07:00
Den Delimarsky 🌺	5243137f25	Update changelog	2025-09-21 01:28:23 -07:00
lucien	8c4f348ac1	docs: Update README with codex in check command	2025-09-21 16:15:11 +08:00
Den Delimarsky	0e49e79610	Update scripts/bash/update-agent-context.sh Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>	2025-09-21 00:52:35 -07:00
Den Delimarsky 🌺	93e41567d9	Fix script config	2025-09-21 00:51:56 -07:00
Den Delimarsky	da60d35bc1	Update scripts/bash/common.sh Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>	2025-09-21 00:46:22 -07:00
Den Delimarsky	84b61bcd20	Update scripts/powershell/update-agent-context.ps1 Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>	2025-09-21 00:45:49 -07:00
Den Delimarsky	0672bfc6aa	Update scripts/powershell/update-agent-context.ps1 Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>	2025-09-21 00:45:31 -07:00
Den Delimarsky 🌺	d682f5a164	Clarification	2025-09-21 00:44:20 -07:00
Den Delimarsky 🌺	895bcbef00	Update prompts	2025-09-21 00:02:33 -07:00
Den Delimarsky 🌺	90f06521a2	Update update-agent-context.ps1	2025-09-20 23:38:31 -07:00
Den Delimarsky 🌺	d92d6f57db	Update CONTRIBUTING.md	2025-09-20 21:43:15 -07:00
Den Delimarsky 🌺	f9c9cd3b61	Update CONTRIBUTING.md	2025-09-20 21:41:30 -07:00
Den Delimarsky 🌺	f4b16080da	Update CONTRIBUTING.md	2025-09-20 21:34:55 -07:00
Den Delimarsky 🌺	7c2fd502c8	Update CONTRIBUTING.md	2025-09-20 21:23:04 -07:00
Den Delimarsky 🌺	5eccac5524	Update CONTRIBUTING.md	2025-09-20 21:21:35 -07:00
Den Delimarsky 🌺	ee9f83929a	Update contribution guidelines.	2025-09-20 21:20:54 -07:00
Den Delimarsky 🌺	3bdb1d9f3f	Root detection logic	2025-09-20 20:14:11 -07:00
Den Delimarsky	0e5f7cee9a	Update templates/plan-template.md Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>	2025-09-20 19:54:43 -07:00
Den Delimarsky	4cc15bab98	Update scripts/bash/update-agent-context.sh Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>	2025-09-20 19:54:33 -07:00
Den Delimarsky	8d529599f1	Update scripts/powershell/create-new-feature.ps1 Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>	2025-09-20 19:54:10 -07:00
Den Delimarsky 🌺	406521c664	Simplification	2025-09-20 15:29:37 -07:00
Den Delimarsky 🌺	1a71b03195	Script and template tweaks	2025-09-20 15:04:25 -07:00
Den Delimarsky 🌺	f04e01d4a2	Merge branch 'consolidate-scripts' of https://github.com/github/spec-kit into consolidate-scripts	2025-09-20 13:57:15 -07:00
Den Delimarsky 🌺	2d242b4732	Update config	2025-09-20 13:57:05 -07:00
Den Delimarsky	84ec4611c4	Update scripts/powershell/check-prerequisites.ps1 Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>	2025-09-20 13:56:20 -07:00
Den Delimarsky	2c1e1688e8	Update scripts/bash/check-prerequisites.sh Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>	2025-09-20 13:56:06 -07:00
Den Delimarsky 🌺	3f67cf2f5f	Fix script path	2025-09-20 12:26:57 -07:00
Den Delimarsky 🌺	505b956bfd	Script cleanup	2025-09-20 12:14:42 -07:00
Den Delimarsky	0bebcf93b3	Update scripts/bash/check-prerequisites.sh Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>	2025-09-20 12:01:26 -07:00
Den Delimarsky	826c3a6102	Update scripts/powershell/check-prerequisites.ps1 Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>	2025-09-20 12:01:05 -07:00
Den Delimarsky 🌺	e83e1cd8e3	Update script delegation from GitHub Action	2025-09-20 11:57:01 -07:00
Den Delimarsky 🌺	aa08257d98	Cleanup the setup for generated packages	2025-09-20 11:52:29 -07:00
Den Delimarsky 🌺	64171ec062	Use proper line endings	2025-09-20 11:38:04 -07:00
Den Delimarsky 🌺	7c0f0a4627	Consolidate scripts	2025-09-20 11:19:47 -07:00
Den Delimarsky 🌺	219ad02e4a	Updating agent context files	2025-09-20 11:05:08 -07:00