fix: detect stale registry and reinstall git extension when directory missing

Co-authored-by: mnriem <15701806+mnriem@users.noreply.github.com>
Agent-Logs-Url: https://github.com/github/spec-kit/sessions/d5cbfcf4-4651-4784-9234-c4a42a333438

AGENTS.md

@@ -427,56 +427,4 @@ When adding new agents:
 
 ---
 
-## Agent Pack System (new)
-
-The agent pack system is a declarative, self-contained replacement for the legacy `AGENT_CONFIG` + case/switch architecture. Each agent is defined by a `speckit-agent.yml` manifest and an optional `bootstrap.py` module. When `bootstrap.py` is absent, the built-in `DefaultBootstrap` class derives its directory layout from the manifest's `commands_dir` field.
-
-### `--agent` flag on `specify init`
-
-`specify init --agent <id>` uses the pack-based init flow instead of the legacy `--ai` flow. Both accept the same agent IDs, but `--agent` additionally enables installed-file tracking so that `specify agent switch` can cleanly tear down agent files later.
-
-```bash
-specify init my-project --agent claude          # Pack-based flow (with file tracking)
-specify init --here --agent gemini --ai-skills  # With skills
-```
-
-`--agent` and `--ai` are mutually exclusive. When `--agent` is used, `init-options.json` gains `"agent_pack": true`. The `generic` agent (which requires `--ai-commands-dir`) falls through to the legacy flow since it has no embedded pack.
-
-### `specify agent` subcommands
-
-| Command                         | Description |
-| ------------------------------- | ----------- |
-| `specify agent list`            | List all available agent packs |
-| `specify agent list --installed`| List only agents installed in the current project |
-| `specify agent info <id>`       | Show detailed information about an agent pack |
-| `specify agent switch <id>`     | Switch the active agent (tears down old, sets up new) |
-| `specify agent search [query]`  | Search agents by name, ID, description, or tags |
-| `specify agent validate <path>` | Validate an agent pack directory |
-| `specify agent export <id>`     | Export an agent pack for editing |
-| `specify agent add <id> --from <path>` | Install an agent pack from a local directory |
-| `specify agent remove <id>`     | Remove a cached/override agent pack |
-
-> **Note:** `specify agent add <id>` without `--from <path>` is reserved for future catalog-based installation, which is not yet implemented.
-
-### Pack resolution order
-
-Agent packs resolve by priority (highest first):
-1. **User-level** (`~/.specify/agents/<id>/`) — applies to all projects
-2. **Project-level** (`.specify/agents/<id>/`) — project-specific override
-3. **Catalog cache** (downloaded via `specify agent add`)
-4. **Embedded** (bundled in the specify-cli wheel)
-
-### Trust boundary
-
-Agent packs can include a `bootstrap.py` module that is dynamically imported and executed. Pack authors can run arbitrary code through this mechanism. Only install packs from trusted sources. The 4-level resolution stack means that placing a pack in any of the resolution directories causes its code to run when the agent is loaded.
-
-### Installed-file tracking
-
-When using `--agent`, all installed files are recorded in `.specify/agent-manifest-<id>.json` with SHA-256 hashes. During `specify agent switch`, the CLI:
-1. Checks for user-modified files before teardown
-2. Prompts for confirmation if files were changed
-3. Feeds tracked file lists into teardown for precise, file-level removal (directories are never deleted)
-
----
-
 *This documentation should be updated whenever new agents are added to maintain accuracy and completeness.*

CHANGELOG.md

@@ -1,11 +1,22 @@
 # Changelog
 
-## [0.3.2] - 2026-03-19
+## [0.4.0] - 2026-03-23
 
 ### Changes
 
-- chore: bump version to 0.3.2
+- fix(cli): add allow_unicode=True and encoding="utf-8" to YAML I/O (#1936)
-- Add conduct extension to community catalog (#1908)
+- fix(codex): native skills fallback refresh + legacy prompt suppression (#1930)
+- feat(cli): embed core pack in wheel for offline/air-gapped deployment (#1803)
+- ci: increase stale workflow operations-per-run to 250 (#1922)
+- docs: update publishing guide with Category and Effect columns (#1913)
+- fix: Align native skills frontmatter with install_ai_skills (#1920)
+- feat: add timestamp-based branch naming option for `specify init` (#1911)
+- docs: add Extension Comparison Guide for community extensions (#1897)
+- docs: update SUPPORT.md, fix issue templates, add preset submission template (#1910)
+- Add support for Junie (#1831)
+- feat: migrate Codex/agy init to native skills workflow (#1906)
+- chore: bump version to 0.3.2 (#1909)
+
 - feat(extensions): add verify-tasks extension to community catalog (#1871)
 - feat(presets): add enable/disable toggle and update semantics (#1891)
 - feat: add iFlow CLI support (#1875)
@@ -21,6 +32,13 @@
 - Feature/spec kit add pi coding agent pullrequest (#1853)
 - feat: register spec-kit-learn extension (#1883)
 
+## [0.3.2] - 2026-03-19
+
+### Changes
+
+- chore: bump version to 0.3.2
+- Add conduct extension to community catalog (#1908)
+
 ## [0.3.1] - 2026-03-17
 
 ### Changed

extensions/git/README.md

@@ -0,0 +1,71 @@
+# Git Branching Workflow Extension
+
+Feature branch creation, numbering (sequential/timestamp), validation, and Git remote detection for Spec Kit.
+
+## Overview
+
+This extension provides Git branching operations as an optional, self-contained module. It manages:
+
+- **Feature branch creation** with sequential (`001-feature-name`) or timestamp (`20260319-143022-feature-name`) numbering
+- **Branch validation** to ensure branches follow naming conventions
+- **Git remote detection** for GitHub integration (e.g., issue creation)
+
+## Commands
+
+| Command | Description |
+|---------|-------------|
+| `speckit.git.feature` | Create a feature branch with sequential or timestamp numbering |
+| `speckit.git.validate` | Validate current branch follows feature branch naming conventions |
+| `speckit.git.remote` | Detect Git remote URL for GitHub integration |
+
+## Hooks
+
+| Event | Command | Optional | Description |
+|-------|---------|----------|-------------|
+| `before_specify` | `speckit.git.feature` | No | Create feature branch before specification |
+| `after_implement` | `speckit.git.validate` | Yes | Validate branch naming after implementation |
+
+## Configuration
+
+Configuration is stored in `.specify/extensions/git/git-config.yml`:
+
+```yaml
+# Branch numbering strategy: "sequential" or "timestamp"
+branch_numbering: sequential
+```
+
+## Installation
+
+```bash
+# Install from the bundled extension directory
+specify extension add extensions/git --dev
+
+# Or it auto-installs during specify init (migration period)
+```
+
+## Disabling
+
+```bash
+# Disable the git extension (spec creation continues without branching)
+specify extension disable git
+
+# Re-enable it
+specify extension enable git
+```
+
+## Graceful Degradation
+
+When Git is not installed or the directory is not a Git repository:
+- Spec directories are still created under `specs/`
+- Branch creation is skipped with a warning
+- Branch validation is skipped with a warning
+- Remote detection returns empty results
+
+## Scripts
+
+The extension bundles cross-platform scripts:
+
+- `scripts/bash/create-new-feature.sh` — Bash implementation
+- `scripts/bash/git-common.sh` — Shared Git utilities (Bash)
+- `scripts/powershell/create-new-feature.ps1` — PowerShell implementation
+- `scripts/powershell/git-common.ps1` — Shared Git utilities (PowerShell)

extensions/git/commands/speckit.git.feature.md

@@ -0,0 +1,66 @@
+---
+description: "Create a feature branch with sequential or timestamp numbering"
+---
+
+# Create Feature Branch
+
+Create a new feature branch for the given specification.
+
+## User Input
+
+```text
+$ARGUMENTS
+```
+
+You **MUST** consider the user input before proceeding (if not empty).
+
+## Prerequisites
+
+- Verify Git is available by running `git rev-parse --is-inside-work-tree 2>/dev/null`
+- If Git is not available, warn the user and skip branch creation (spec directory will still be created)
+
+## Branch Numbering Mode
+
+Determine the branch numbering strategy by checking configuration in this order:
+
+1. Check `.specify/extensions/git/git-config.yml` for `branch_numbering` value
+2. Check `.specify/init-options.json` for `branch_numbering` value (backward compatibility)
+3. Default to `sequential` if neither exists
+
+## Execution
+
+Generate a concise short name (2-4 words) for the branch:
+- Analyze the feature description and extract the most meaningful keywords
+- Use action-noun format when possible (e.g., "add-user-auth", "fix-payment-bug")
+- Preserve technical terms and acronyms (OAuth2, API, JWT, etc.)
+
+Run the appropriate script based on your platform:
+
+- **Bash**: `.specify/extensions/git/scripts/bash/create-new-feature.sh --json --short-name "<short-name>" "<feature description>"`
+- **Bash (timestamp)**: `.specify/extensions/git/scripts/bash/create-new-feature.sh --json --timestamp --short-name "<short-name>" "<feature description>"`
+- **PowerShell**: `.specify/extensions/git/scripts/powershell/create-new-feature.ps1 -Json -ShortName "<short-name>" "<feature description>"`
+- **PowerShell (timestamp)**: `.specify/extensions/git/scripts/powershell/create-new-feature.ps1 -Json -Timestamp -ShortName "<short-name>" "<feature description>"`
+
+**IMPORTANT**:
+- Do NOT pass `--number` — the script determines the correct next number automatically
+- Always include the JSON flag (`--json` for Bash, `-Json` for PowerShell) so the output can be parsed reliably
+- You must only ever run this script once per feature
+- The JSON output will contain BRANCH_NAME and SPEC_FILE paths
+
+If the extension scripts are not found at the `.specify/extensions/git/` path, fall back to:
+- **Bash**: `scripts/bash/create-new-feature.sh`
+- **PowerShell**: `scripts/powershell/create-new-feature.ps1`
+
+## Graceful Degradation
+
+If Git is not installed or the current directory is not a Git repository:
+- The script will still create the spec directory under `specs/`
+- A warning will be printed: `[specify] Warning: Git repository not detected; skipped branch creation`
+- The workflow continues normally without branch creation
+
+## Output
+
+The script outputs JSON with:
+- `BRANCH_NAME`: The created branch name (e.g., `003-user-auth` or `20260319-143022-user-auth`)
+- `SPEC_FILE`: Path to the created spec file
+- `FEATURE_NUM`: The numeric or timestamp prefix used

extensions/git/commands/speckit.git.remote.md

@@ -0,0 +1,45 @@
+---
+description: "Detect Git remote URL for GitHub integration"
+---
+
+# Detect Git Remote URL
+
+Detect the Git remote URL for integration with GitHub services (e.g., issue creation).
+
+## Prerequisites
+
+- Check if Git is available by running `git rev-parse --is-inside-work-tree 2>/dev/null`
+- If Git is not available, output a warning and return empty:
+  ```
+  [specify] Warning: Git repository not detected; cannot determine remote URL
+  ```
+
+## Execution
+
+Run the following command to get the remote URL:
+
+```bash
+git config --get remote.origin.url
+```
+
+## Output
+
+Parse the remote URL and determine:
+
+1. **Repository owner**: Extract from the URL (e.g., `github` from `https://github.com/github/spec-kit.git`)
+2. **Repository name**: Extract from the URL (e.g., `spec-kit` from `https://github.com/github/spec-kit.git`)
+3. **Is GitHub**: Whether the remote points to a GitHub repository
+
+Supported URL formats:
+- HTTPS: `https://github.com/<owner>/<repo>.git`
+- SSH: `git@github.com:<owner>/<repo>.git`
+
+> [!CAUTION]
+> ONLY report a GitHub repository if the remote URL actually points to github.com.
+> Do NOT assume the remote is GitHub if the URL format doesn't match.
+
+## Graceful Degradation
+
+If Git is not installed, the directory is not a Git repository, or no remote is configured:
+- Return an empty result
+- Do NOT error — other workflows should continue without Git remote information

extensions/git/commands/speckit.git.validate.md

@@ -0,0 +1,49 @@
+---
+description: "Validate current branch follows feature branch naming conventions"
+---
+
+# Validate Feature Branch
+
+Validate that the current Git branch follows the expected feature branch naming conventions.
+
+## Prerequisites
+
+- Check if Git is available by running `git rev-parse --is-inside-work-tree 2>/dev/null`
+- If Git is not available, output a warning and skip validation:
+  ```
+  [specify] Warning: Git repository not detected; skipped branch validation
+  ```
+
+## Validation Rules
+
+Get the current branch name:
+
+```bash
+git rev-parse --abbrev-ref HEAD
+```
+
+The branch name must match one of these patterns:
+
+1. **Sequential**: `^[0-9]{3}-` (e.g., `001-feature-name`, `042-fix-bug`)
+2. **Timestamp**: `^[0-9]{8}-[0-9]{6}-` (e.g., `20260319-143022-feature-name`)
+
+## Execution
+
+If on a feature branch (matches either pattern):
+- Output: `✓ On feature branch: <branch-name>`
+- Check if the corresponding spec directory exists under `specs/`:
+  - For sequential branches, look for `specs/<prefix>-*` where prefix matches the `###` portion
+  - For timestamp branches, look for `specs/<prefix>-*` where prefix matches the `YYYYMMDD-HHMMSS` portion
+- If spec directory exists: `✓ Spec directory found: <path>`
+- If spec directory missing: `⚠ No spec directory found for prefix <prefix>`
+
+If NOT on a feature branch:
+- Output: `✗ Not on a feature branch. Current branch: <branch-name>`
+- Output: `Feature branches should be named like: 001-feature-name or 20260319-143022-feature-name`
+
+## Graceful Degradation
+
+If Git is not installed or the directory is not a Git repository:
+- Check the `SPECIFY_FEATURE` environment variable as a fallback
+- If set, validate that value against the naming patterns
+- If not set, skip validation with a warning

extensions/git/config-template.yml

@@ -0,0 +1,5 @@
+# Git Branching Workflow Extension Configuration
+# Copy this file to .specify/extensions/git/git-config.yml to customize
+
+# Branch numbering strategy: "sequential" (001, 002, ...) or "timestamp" (YYYYMMDD-HHMMSS)
+branch_numbering: sequential

extensions/git/extension.yml

@@ -0,0 +1,47 @@
+schema_version: "1.0"
+
+extension:
+  id: git
+  name: "Git Branching Workflow"
+  version: "1.0.0"
+  description: "Feature branch creation, numbering (sequential/timestamp), validation, and Git remote detection"
+  author: spec-kit-core
+  repository: https://github.com/github/spec-kit
+  license: MIT
+
+requires:
+  speckit_version: ">=0.2.0"
+  tools:
+    - name: git
+      required: false
+
+provides:
+  commands:
+    - name: speckit.git.feature
+      file: commands/speckit.git.feature.md
+      description: "Create a feature branch with sequential or timestamp numbering"
+    - name: speckit.git.validate
+      file: commands/speckit.git.validate.md
+      description: "Validate current branch follows feature branch naming conventions"
+    - name: speckit.git.remote
+      file: commands/speckit.git.remote.md
+      description: "Detect Git remote URL for GitHub integration"
+
+hooks:
+  before_specify:
+    command: speckit.git.feature
+    optional: false
+    description: "Create feature branch before specification"
+  after_implement:
+    command: speckit.git.validate
+    optional: true
+    prompt: "Verify feature branch naming?"
+    description: "Validate branch naming after implementation"
+
+tags:
+  - "git"
+  - "branching"
+  - "workflow"
+
+defaults:
+  branch_numbering: sequential

extensions/git/scripts/bash/create-new-feature.sh

@@ -0,0 +1,394 @@
+#!/usr/bin/env bash
+
+set -e
+
+JSON_MODE=false
+SHORT_NAME=""
+BRANCH_NUMBER=""
+USE_TIMESTAMP=false
+ARGS=()
+i=1
+while [ $i -le $# ]; do
+    arg="${!i}"
+    case "$arg" in
+        --json)
+            JSON_MODE=true
+            ;;
+        --short-name)
+            if [ $((i + 1)) -gt $# ]; then
+                echo 'Error: --short-name requires a value' >&2
+                exit 1
+            fi
+            i=$((i + 1))
+            next_arg="${!i}"
+            # Check if the next argument is another option (starts with --)
+            if [[ "$next_arg" == --* ]]; then
+                echo 'Error: --short-name requires a value' >&2
+                exit 1
+            fi
+            SHORT_NAME="$next_arg"
+            ;;
+        --number)
+            if [ $((i + 1)) -gt $# ]; then
+                echo 'Error: --number requires a value' >&2
+                exit 1
+            fi
+            i=$((i + 1))
+            next_arg="${!i}"
+            if [[ "$next_arg" == --* ]]; then
+                echo 'Error: --number requires a value' >&2
+                exit 1
+            fi
+            BRANCH_NUMBER="$next_arg"
+            ;;
+        --timestamp)
+            USE_TIMESTAMP=true
+            ;;
+        --help|-h)
+            echo "Usage: $0 [--json] [--short-name <name>] [--number N] [--timestamp] <feature_description>"
+            echo ""
+            echo "Options:"
+            echo "  --json              Output in JSON format"
+            echo "  --short-name <name> Provide a custom short name (2-4 words) for the branch"
+            echo "  --number N          Specify branch number manually (overrides auto-detection)"
+            echo "  --timestamp         Use timestamp prefix (YYYYMMDD-HHMMSS) instead of sequential numbering"
+            echo "  --help, -h          Show this help message"
+            echo ""
+            echo "Examples:"
+            echo "  $0 'Add user authentication system' --short-name 'user-auth'"
+            echo "  $0 'Implement OAuth2 integration for API' --number 5"
+            echo "  $0 --timestamp --short-name 'user-auth' 'Add user authentication'"
+            exit 0
+            ;;
+        *)
+            ARGS+=("$arg")
+            ;;
+    esac
+    i=$((i + 1))
+done
+
+FEATURE_DESCRIPTION="${ARGS[*]}"
+if [ -z "$FEATURE_DESCRIPTION" ]; then
+    echo "Usage: $0 [--json] [--short-name <name>] [--number N] [--timestamp] <feature_description>" >&2
+    exit 1
+fi
+
+# Trim whitespace and validate description is not empty (e.g., user passed only whitespace)
+FEATURE_DESCRIPTION=$(echo "$FEATURE_DESCRIPTION" | xargs)
+if [ -z "$FEATURE_DESCRIPTION" ]; then
+    echo "Error: Feature description cannot be empty or contain only whitespace" >&2
+    exit 1
+fi
+
+# Function to find the repository root by searching for existing project markers
+find_repo_root() {
+    local dir="$1"
+    while [ "$dir" != "/" ]; do
+        if [ -d "$dir/.git" ] || [ -d "$dir/.specify" ]; then
+            echo "$dir"
+            return 0
+        fi
+        dir="$(dirname "$dir")"
+    done
+    return 1
+}
+
+# Function to get highest number from specs directory
+get_highest_from_specs() {
+    local specs_dir="$1"
+    local highest=0
+    
+    if [ -d "$specs_dir" ]; then
+        for dir in "$specs_dir"/*; do
+            [ -d "$dir" ] || continue
+            dirname=$(basename "$dir")
+            # Only match sequential prefixes (###-*), skip timestamp dirs
+            if echo "$dirname" | grep -q '^[0-9]\{3\}-'; then
+                number=$(echo "$dirname" | grep -o '^[0-9]\{3\}')
+                number=$((10#$number))
+                if [ "$number" -gt "$highest" ]; then
+                    highest=$number
+                fi
+            fi
+        done
+    fi
+    
+    echo "$highest"
+}
+
+# Function to get highest number from git branches
+get_highest_from_branches() {
+    local highest=0
+    
+    # Get all branches (local and remote)
+    branches=$(git branch -a 2>/dev/null || echo "")
+    
+    if [ -n "$branches" ]; then
+        while IFS= read -r branch; do
+            # Clean branch name: remove leading markers and remote prefixes
+            clean_branch=$(echo "$branch" | sed 's/^[* ]*//; s|^remotes/[^/]*/||')
+            
+            # Extract feature number if branch matches pattern ###-*
+            if echo "$clean_branch" | grep -q '^[0-9]\{3\}-'; then
+                number=$(echo "$clean_branch" | grep -o '^[0-9]\{3\}' || echo "0")
+                number=$((10#$number))
+                if [ "$number" -gt "$highest" ]; then
+                    highest=$number
+                fi
+            fi
+        done <<< "$branches"
+    fi
+    
+    echo "$highest"
+}
+
+# Function to check existing branches (local and remote) and return next available number
+check_existing_branches() {
+    local specs_dir="$1"
+
+    # Fetch all remotes to get latest branch info (suppress errors if no remotes)
+    git fetch --all --prune >/dev/null 2>&1 || true
+
+    # Get highest number from ALL branches (not just matching short name)
+    local highest_branch=$(get_highest_from_branches)
+
+    # Get highest number from ALL specs (not just matching short name)
+    local highest_spec=$(get_highest_from_specs "$specs_dir")
+
+    # Take the maximum of both
+    local max_num=$highest_branch
+    if [ "$highest_spec" -gt "$max_num" ]; then
+        max_num=$highest_spec
+    fi
+
+    # Return next number
+    echo $((max_num + 1))
+}
+
+# Function to clean and format a branch name
+clean_branch_name() {
+    local name="$1"
+    echo "$name" | tr '[:upper:]' '[:lower:]' | sed 's/[^a-z0-9]/-/g' | sed 's/-\+/-/g' | sed 's/^-//' | sed 's/-$//'
+}
+
+# Resolve repository root. Prefer git information when available, but fall back
+# to searching for repository markers so the workflow still functions in repositories that
+# were initialised with --no-git.
+SCRIPT_DIR="$(CDPATH="" cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+
+# Source common.sh using the following priority:
+#  1. common.sh next to this script (source checkout layout)
+#  2. .specify/scripts/bash/common.sh under the project root (installed project)
+#  3. scripts/bash/common.sh under the project root (source checkout fallback)
+#  4. git-common.sh next to this script (minimal fallback)
+_common_loaded=false
+
+if [ -f "$SCRIPT_DIR/common.sh" ]; then
+    source "$SCRIPT_DIR/common.sh"
+    _common_loaded=true
+else
+    # When running from an extension install (.specify/extensions/git/scripts/bash/),
+    # resolve to .specify/ (4 levels up), then to the project root (5 levels up).
+    _dot_specify="$(cd "$SCRIPT_DIR/../../../.." 2>/dev/null && pwd)"
+    _project_root="$(cd "$SCRIPT_DIR/../../../../.." 2>/dev/null && pwd)"
+
+    if [ -n "$_dot_specify" ] && [ -f "$_dot_specify/scripts/bash/common.sh" ]; then
+        source "$_dot_specify/scripts/bash/common.sh"
+        _common_loaded=true
+    elif [ -n "$_project_root" ] && [ -f "$_project_root/scripts/bash/common.sh" ]; then
+        source "$_project_root/scripts/bash/common.sh"
+        _common_loaded=true
+    elif [ -f "$SCRIPT_DIR/git-common.sh" ]; then
+        source "$SCRIPT_DIR/git-common.sh"
+        _common_loaded=true
+    fi
+fi
+
+if [ "$_common_loaded" != "true" ]; then
+    echo "Error: Could not locate common.sh or git-common.sh. Please ensure the Specify core scripts are installed." >&2
+    exit 1
+fi
+
+# If only git-common.sh was loaded, verify that the required helpers
+# (resolve_template, json_escape) are available.  These are provided by the
+# core common.sh; git-common.sh only supplies has_git / check_feature_branch.
+if ! type resolve_template >/dev/null 2>&1 || ! type json_escape >/dev/null 2>&1; then
+    echo "Error: resolve_template/json_escape not defined.  The core common.sh is required but could not be located." >&2
+    echo "Tried: $SCRIPT_DIR/common.sh, .specify/scripts/bash/common.sh, scripts/bash/common.sh" >&2
+    exit 1
+fi
+
+if git rev-parse --show-toplevel >/dev/null 2>&1; then
+    REPO_ROOT=$(git rev-parse --show-toplevel)
+    HAS_GIT=true
+else
+    REPO_ROOT="$(find_repo_root "$SCRIPT_DIR")"
+    if [ -z "$REPO_ROOT" ]; then
+        echo "Error: Could not determine repository root. Please run this script from within the repository." >&2
+        exit 1
+    fi
+    HAS_GIT=false
+fi
+
+cd "$REPO_ROOT"
+
+SPECS_DIR="$REPO_ROOT/specs"
+mkdir -p "$SPECS_DIR"
+
+# Function to generate branch name with stop word filtering and length filtering
+generate_branch_name() {
+    local description="$1"
+    
+    # Common stop words to filter out
+    local stop_words="^(i|a|an|the|to|for|of|in|on|at|by|with|from|is|are|was|were|be|been|being|have|has|had|do|does|did|will|would|should|could|can|may|might|must|shall|this|that|these|those|my|your|our|their|want|need|add|get|set)$"
+    
+    # Convert to lowercase and split into words
+    local clean_name=$(echo "$description" | tr '[:upper:]' '[:lower:]' | sed 's/[^a-z0-9]/ /g')
+    
+    # Filter words: remove stop words and words shorter than 3 chars (unless they're uppercase acronyms in original)
+    local meaningful_words=()
+    for word in $clean_name; do
+        # Skip empty words
+        [ -z "$word" ] && continue
+        
+        # Keep words that are NOT stop words AND (length >= 3 OR are potential acronyms)
+        if ! echo "$word" | grep -qiE "$stop_words"; then
+            if [ ${#word} -ge 3 ]; then
+                meaningful_words+=("$word")
+            elif echo "$description" | grep -q "\b${word^^}\b"; then
+                # Keep short words if they appear as uppercase in original (likely acronyms)
+                meaningful_words+=("$word")
+            fi
+        fi
+    done
+    
+    # If we have meaningful words, use first 3-4 of them
+    if [ ${#meaningful_words[@]} -gt 0 ]; then
+        local max_words=3
+        if [ ${#meaningful_words[@]} -eq 4 ]; then max_words=4; fi
+        
+        local result=""
+        local count=0
+        for word in "${meaningful_words[@]}"; do
+            if [ $count -ge $max_words ]; then break; fi
+            if [ -n "$result" ]; then result="$result-"; fi
+            result="$result$word"
+            count=$((count + 1))
+        done
+        echo "$result"
+    else
+        # Fallback to original logic if no meaningful words found
+        local cleaned=$(clean_branch_name "$description")
+        echo "$cleaned" | tr '-' '\n' | grep -v '^$' | head -3 | tr '\n' '-' | sed 's/-$//'
+    fi
+}
+
+# Generate branch name
+if [ -n "$SHORT_NAME" ]; then
+    # Use provided short name, just clean it up
+    BRANCH_SUFFIX=$(clean_branch_name "$SHORT_NAME")
+else
+    # Generate from description with smart filtering
+    BRANCH_SUFFIX=$(generate_branch_name "$FEATURE_DESCRIPTION")
+fi
+
+# Warn if --number and --timestamp are both specified
+if [ "$USE_TIMESTAMP" = true ] && [ -n "$BRANCH_NUMBER" ]; then
+    >&2 echo "[specify] Warning: --number is ignored when --timestamp is used"
+    BRANCH_NUMBER=""
+fi
+
+# Determine branch prefix
+if [ "$USE_TIMESTAMP" = true ]; then
+    FEATURE_NUM=$(date +%Y%m%d-%H%M%S)
+    BRANCH_NAME="${FEATURE_NUM}-${BRANCH_SUFFIX}"
+else
+    # Determine branch number
+    if [ -z "$BRANCH_NUMBER" ]; then
+        if [ "$HAS_GIT" = true ]; then
+            # Check existing branches on remotes
+            BRANCH_NUMBER=$(check_existing_branches "$SPECS_DIR")
+        else
+            # Fall back to local directory check
+            HIGHEST=$(get_highest_from_specs "$SPECS_DIR")
+            BRANCH_NUMBER=$((HIGHEST + 1))
+        fi
+    fi
+
+    # Force base-10 interpretation to prevent octal conversion (e.g., 010 → 8 in octal, but should be 10 in decimal)
+    FEATURE_NUM=$(printf "%03d" "$((10#$BRANCH_NUMBER))")
+    BRANCH_NAME="${FEATURE_NUM}-${BRANCH_SUFFIX}"
+fi
+
+# GitHub enforces a 244-byte limit on branch names
+# Validate and truncate if necessary
+MAX_BRANCH_LENGTH=244
+if [ ${#BRANCH_NAME} -gt $MAX_BRANCH_LENGTH ]; then
+    # Calculate how much we need to trim from suffix
+    # Account for prefix length: timestamp (15) + hyphen (1) = 16, or sequential (3) + hyphen (1) = 4
+    PREFIX_LENGTH=$(( ${#FEATURE_NUM} + 1 ))
+    MAX_SUFFIX_LENGTH=$((MAX_BRANCH_LENGTH - PREFIX_LENGTH))
+    
+    # Truncate suffix at word boundary if possible
+    TRUNCATED_SUFFIX=$(echo "$BRANCH_SUFFIX" | cut -c1-$MAX_SUFFIX_LENGTH)
+    # Remove trailing hyphen if truncation created one
+    TRUNCATED_SUFFIX=$(echo "$TRUNCATED_SUFFIX" | sed 's/-$//')
+    
+    ORIGINAL_BRANCH_NAME="$BRANCH_NAME"
+    BRANCH_NAME="${FEATURE_NUM}-${TRUNCATED_SUFFIX}"
+    
+    >&2 echo "[specify] Warning: Branch name exceeded GitHub's 244-byte limit"
+    >&2 echo "[specify] Original: $ORIGINAL_BRANCH_NAME (${#ORIGINAL_BRANCH_NAME} bytes)"
+    >&2 echo "[specify] Truncated to: $BRANCH_NAME (${#BRANCH_NAME} bytes)"
+fi
+
+if [ "$HAS_GIT" = true ]; then
+    if ! git checkout -q -b "$BRANCH_NAME" >/dev/null 2>&1; then
+        # Check if branch already exists
+        if git branch --list "$BRANCH_NAME" | grep -q .; then
+            if [ "$USE_TIMESTAMP" = true ]; then
+                >&2 echo "Error: Branch '$BRANCH_NAME' already exists. Rerun to get a new timestamp or use a different --short-name."
+            else
+                >&2 echo "Error: Branch '$BRANCH_NAME' already exists. Please use a different feature name or specify a different number with --number."
+            fi
+            exit 1
+        else
+            >&2 echo "Error: Failed to create git branch '$BRANCH_NAME'. Please check your git configuration and try again."
+            exit 1
+        fi
+    fi
+else
+    >&2 echo "[specify] Warning: Git repository not detected; skipped branch creation for $BRANCH_NAME"
+fi
+
+FEATURE_DIR="$SPECS_DIR/$BRANCH_NAME"
+mkdir -p "$FEATURE_DIR"
+
+TEMPLATE=$(resolve_template "spec-template" "$REPO_ROOT") || true
+SPEC_FILE="$FEATURE_DIR/spec.md"
+if [ -n "$TEMPLATE" ] && [ -f "$TEMPLATE" ]; then
+    cp "$TEMPLATE" "$SPEC_FILE"
+else
+    echo "Warning: Spec template not found; created empty spec file" >&2
+    touch "$SPEC_FILE"
+fi
+
+# Inform the user how to persist the feature variable in their own shell
+printf '# To persist: export SPECIFY_FEATURE=%q\n' "$BRANCH_NAME" >&2
+
+if $JSON_MODE; then
+    if command -v jq >/dev/null 2>&1; then
+        jq -cn \
+            --arg branch_name "$BRANCH_NAME" \
+            --arg spec_file "$SPEC_FILE" \
+            --arg feature_num "$FEATURE_NUM" \
+            '{BRANCH_NAME:$branch_name,SPEC_FILE:$spec_file,FEATURE_NUM:$feature_num}'
+    else
+        printf '{"BRANCH_NAME":"%s","SPEC_FILE":"%s","FEATURE_NUM":"%s"}\n' "$(json_escape "$BRANCH_NAME")" "$(json_escape "$SPEC_FILE")" "$(json_escape "$FEATURE_NUM")"
+    fi
+else
+    echo "BRANCH_NAME: $BRANCH_NAME"
+    echo "SPEC_FILE: $SPEC_FILE"
+    echo "FEATURE_NUM: $FEATURE_NUM"
+    printf '# To persist in your shell: export SPECIFY_FEATURE=%q\n' "$BRANCH_NAME"
+fi

extensions/git/scripts/bash/git-common.sh

@@ -0,0 +1,30 @@
+#!/usr/bin/env bash
+# Git-specific common functions for the git extension.
+# Extracted from scripts/bash/common.sh — contains only git-specific
+# branch validation and detection logic.
+
+# Check if we have git available
+has_git() {
+    git rev-parse --show-toplevel >/dev/null 2>&1
+}
+
+# Validate that a branch name matches the expected feature branch pattern.
+# Accepts sequential (###-*) or timestamp (YYYYMMDD-HHMMSS-*) formats.
+check_feature_branch() {
+    local branch="$1"
+    local has_git_repo="$2"
+
+    # For non-git repos, we can't enforce branch naming but still provide output
+    if [[ "$has_git_repo" != "true" ]]; then
+        echo "[specify] Warning: Git repository not detected; skipped branch validation" >&2
+        return 0
+    fi
+
+    if [[ ! "$branch" =~ ^[0-9]{3}- ]] && [[ ! "$branch" =~ ^[0-9]{8}-[0-9]{6}- ]]; then
+        echo "ERROR: Not on a feature branch. Current branch: $branch" >&2
+        echo "Feature branches should be named like: 001-feature-name or 20260319-143022-feature-name" >&2
+        return 1
+    fi
+
+    return 0
+}

extensions/git/scripts/powershell/create-new-feature.ps1

@@ -0,0 +1,368 @@
+#!/usr/bin/env pwsh
+# Create a new feature
+[CmdletBinding()]
+param(
+    [switch]$Json,
+    [string]$ShortName,
+    [Parameter()]
+    [int]$Number = 0,
+    [switch]$Timestamp,
+    [switch]$Help,
+    [Parameter(Position = 0, ValueFromRemainingArguments = $true)]
+    [string[]]$FeatureDescription
+)
+$ErrorActionPreference = 'Stop'
+
+# Show help if requested
+if ($Help) {
+    Write-Host "Usage: ./create-new-feature.ps1 [-Json] [-ShortName <name>] [-Number N] [-Timestamp] <feature description>"
+    Write-Host ""
+    Write-Host "Options:"
+    Write-Host "  -Json               Output in JSON format"
+    Write-Host "  -ShortName <name>   Provide a custom short name (2-4 words) for the branch"
+    Write-Host "  -Number N           Specify branch number manually (overrides auto-detection)"
+    Write-Host "  -Timestamp          Use timestamp prefix (YYYYMMDD-HHMMSS) instead of sequential numbering"
+    Write-Host "  -Help               Show this help message"
+    Write-Host ""
+    Write-Host "Examples:"
+    Write-Host "  ./create-new-feature.ps1 'Add user authentication system' -ShortName 'user-auth'"
+    Write-Host "  ./create-new-feature.ps1 'Implement OAuth2 integration for API'"
+    Write-Host "  ./create-new-feature.ps1 -Timestamp -ShortName 'user-auth' 'Add user authentication'"
+    exit 0
+}
+
+# Check if feature description provided
+if (-not $FeatureDescription -or $FeatureDescription.Count -eq 0) {
+    Write-Error "Usage: ./create-new-feature.ps1 [-Json] [-ShortName <name>] [-Number N] [-Timestamp] <feature description>"
+    exit 1
+}
+
+$featureDesc = ($FeatureDescription -join ' ').Trim()
+
+# Validate description is not empty after trimming (e.g., user passed only whitespace)
+if ([string]::IsNullOrWhiteSpace($featureDesc)) {
+    Write-Error "Error: Feature description cannot be empty or contain only whitespace"
+    exit 1
+}
+
+# Resolve repository root. Prefer git information when available, but fall back
+# to searching for repository markers so the workflow still functions in repositories that
+# were initialized with --no-git.
+function Find-RepositoryRoot {
+    param(
+        [string]$StartDir,
+        [string[]]$Markers = @('.git', '.specify')
+    )
+    $current = Resolve-Path $StartDir
+    while ($true) {
+        foreach ($marker in $Markers) {
+            if (Test-Path (Join-Path $current $marker)) {
+                return $current
+            }
+        }
+        $parent = Split-Path $current -Parent
+        if ($parent -eq $current) {
+            # Reached filesystem root without finding markers
+            return $null
+        }
+        $current = $parent
+    }
+}
+
+function Get-HighestNumberFromSpecs {
+    param([string]$SpecsDir)
+    
+    $highest = 0
+    if (Test-Path $SpecsDir) {
+        Get-ChildItem -Path $SpecsDir -Directory | ForEach-Object {
+            if ($_.Name -match '^(\d{3})-') {
+                $num = [int]$matches[1]
+                if ($num -gt $highest) { $highest = $num }
+            }
+        }
+    }
+    return $highest
+}
+
+function Get-HighestNumberFromBranches {
+    param()
+    
+    $highest = 0
+    try {
+        $branches = git branch -a 2>$null
+        if ($LASTEXITCODE -eq 0) {
+            foreach ($branch in $branches) {
+                # Clean branch name: remove leading markers and remote prefixes
+                $cleanBranch = $branch.Trim() -replace '^\*?\s+', '' -replace '^remotes/[^/]+/', ''
+                
+                # Extract feature number if branch matches pattern ###-*
+                if ($cleanBranch -match '^(\d{3})-') {
+                    $num = [int]$matches[1]
+                    if ($num -gt $highest) { $highest = $num }
+                }
+            }
+        }
+    } catch {
+        # If git command fails, return 0
+        Write-Verbose "Could not check Git branches: $_"
+    }
+    return $highest
+}
+
+function Get-NextBranchNumber {
+    param(
+        [string]$SpecsDir
+    )
+
+    # Fetch all remotes to get latest branch info (suppress errors if no remotes)
+    try {
+        git fetch --all --prune 2>$null | Out-Null
+    } catch {
+        # Ignore fetch errors
+    }
+
+    # Get highest number from ALL branches (not just matching short name)
+    $highestBranch = Get-HighestNumberFromBranches
+
+    # Get highest number from ALL specs (not just matching short name)
+    $highestSpec = Get-HighestNumberFromSpecs -SpecsDir $SpecsDir
+
+    # Take the maximum of both
+    $maxNum = [Math]::Max($highestBranch, $highestSpec)
+
+    # Return next number
+    return $maxNum + 1
+}
+
+function ConvertTo-CleanBranchName {
+    param([string]$Name)
+    
+    return $Name.ToLower() -replace '[^a-z0-9]', '-' -replace '-{2,}', '-' -replace '^-', '' -replace '-$', ''
+}
+$fallbackRoot = (Find-RepositoryRoot -StartDir $PSScriptRoot)
+if (-not $fallbackRoot) {
+    Write-Error "Error: Could not determine repository root. Please run this script from within the repository."
+    exit 1
+}
+
+# Load common functions (includes Resolve-Template).
+# Search locations in priority order:
+#  1. common.ps1 next to this script (source checkout layout)
+#  2. .specify/scripts/powershell/common.ps1 under the project root (installed project)
+#  3. scripts/powershell/common.ps1 under the project root (source checkout fallback)
+#  4. git-common.ps1 next to this script (minimal fallback)
+$commonLoaded = $false
+
+if (Test-Path "$PSScriptRoot/common.ps1") {
+    . "$PSScriptRoot/common.ps1"
+    $commonLoaded = $true
+} else {
+    $coreCommonCandidates = @()
+
+    if ($fallbackRoot) {
+        $coreCommonCandidates += (Join-Path $fallbackRoot ".specify/scripts/powershell/common.ps1")
+        $coreCommonCandidates += (Join-Path $fallbackRoot "scripts/powershell/common.ps1")
+    }
+
+    $coreCommonCandidates += "$PSScriptRoot/git-common.ps1"
+
+    foreach ($candidate in $coreCommonCandidates) {
+        if ($candidate -and (Test-Path $candidate)) {
+            . $candidate
+            $commonLoaded = $true
+            break
+        }
+    }
+}
+
+if (-not $commonLoaded) {
+    throw "Unable to locate common script file. Please ensure the Specify core scripts are installed."
+}
+
+# If only git-common.ps1 was loaded, verify that Resolve-Template is available.
+# Resolve-Template is provided by the core common.ps1; git-common.ps1 only
+# supplies Test-HasGit / Test-FeatureBranch.
+if (-not (Get-Command Resolve-Template -ErrorAction SilentlyContinue)) {
+    throw ("Resolve-Template not defined. The core common.ps1 is required but could not be located. " +
+           "Tried: $PSScriptRoot/common.ps1, .specify/scripts/powershell/common.ps1, scripts/powershell/common.ps1")
+}
+
+try {
+    $repoRoot = git rev-parse --show-toplevel 2>$null
+    if ($LASTEXITCODE -eq 0) {
+        $hasGit = $true
+    } else {
+        throw "Git not available"
+    }
+} catch {
+    $repoRoot = $fallbackRoot
+    $hasGit = $false
+}
+
+Set-Location $repoRoot
+
+$specsDir = Join-Path $repoRoot 'specs'
+New-Item -ItemType Directory -Path $specsDir -Force | Out-Null
+
+# Function to generate branch name with stop word filtering and length filtering
+function Get-BranchName {
+    param([string]$Description)
+    
+    # Common stop words to filter out
+    $stopWords = @(
+        'i', 'a', 'an', 'the', 'to', 'for', 'of', 'in', 'on', 'at', 'by', 'with', 'from',
+        'is', 'are', 'was', 'were', 'be', 'been', 'being', 'have', 'has', 'had',
+        'do', 'does', 'did', 'will', 'would', 'should', 'could', 'can', 'may', 'might', 'must', 'shall',
+        'this', 'that', 'these', 'those', 'my', 'your', 'our', 'their',
+        'want', 'need', 'add', 'get', 'set'
+    )
+    
+    # Convert to lowercase and extract words (alphanumeric only)
+    $cleanName = $Description.ToLower() -replace '[^a-z0-9\s]', ' '
+    $words = $cleanName -split '\s+' | Where-Object { $_ }
+    
+    # Filter words: remove stop words and words shorter than 3 chars (unless they're uppercase acronyms in original)
+    $meaningfulWords = @()
+    foreach ($word in $words) {
+        # Skip stop words
+        if ($stopWords -contains $word) { continue }
+        
+        # Keep words that are length >= 3 OR appear as uppercase in original (likely acronyms)
+        if ($word.Length -ge 3) {
+            $meaningfulWords += $word
+        } elseif ($Description -match "\b$($word.ToUpper())\b") {
+            # Keep short words if they appear as uppercase in original (likely acronyms)
+            $meaningfulWords += $word
+        }
+    }
+    
+    # If we have meaningful words, use first 3-4 of them
+    if ($meaningfulWords.Count -gt 0) {
+        $maxWords = if ($meaningfulWords.Count -eq 4) { 4 } else { 3 }
+        $result = ($meaningfulWords | Select-Object -First $maxWords) -join '-'
+        return $result
+    } else {
+        # Fallback to original logic if no meaningful words found
+        $result = ConvertTo-CleanBranchName -Name $Description
+        $fallbackWords = ($result -split '-') | Where-Object { $_ } | Select-Object -First 3
+        return [string]::Join('-', $fallbackWords)
+    }
+}
+
+# Generate branch name
+if ($ShortName) {
+    # Use provided short name, just clean it up
+    $branchSuffix = ConvertTo-CleanBranchName -Name $ShortName
+} else {
+    # Generate from description with smart filtering
+    $branchSuffix = Get-BranchName -Description $featureDesc
+}
+
+# Warn if -Number and -Timestamp are both specified
+if ($Timestamp -and $Number -ne 0) {
+    Write-Warning "[specify] Warning: -Number is ignored when -Timestamp is used"
+    $Number = 0
+}
+
+# Determine branch prefix
+if ($Timestamp) {
+    $featureNum = Get-Date -Format 'yyyyMMdd-HHmmss'
+    $branchName = "$featureNum-$branchSuffix"
+} else {
+    # Determine branch number
+    if ($Number -eq 0) {
+        if ($hasGit) {
+            # Check existing branches on remotes
+            $Number = Get-NextBranchNumber -SpecsDir $specsDir
+        } else {
+            # Fall back to local directory check
+            $Number = (Get-HighestNumberFromSpecs -SpecsDir $specsDir) + 1
+        }
+    }
+
+    $featureNum = ('{0:000}' -f $Number)
+    $branchName = "$featureNum-$branchSuffix"
+}
+
+# GitHub enforces a 244-byte limit on branch names
+# Validate and truncate if necessary
+$maxBranchLength = 244
+if ($branchName.Length -gt $maxBranchLength) {
+    # Calculate how much we need to trim from suffix
+    # Account for prefix length: timestamp (15) + hyphen (1) = 16, or sequential (3) + hyphen (1) = 4
+    $prefixLength = $featureNum.Length + 1
+    $maxSuffixLength = $maxBranchLength - $prefixLength
+    
+    # Truncate suffix
+    $truncatedSuffix = $branchSuffix.Substring(0, [Math]::Min($branchSuffix.Length, $maxSuffixLength))
+    # Remove trailing hyphen if truncation created one
+    $truncatedSuffix = $truncatedSuffix -replace '-$', ''
+    
+    $originalBranchName = $branchName
+    $branchName = "$featureNum-$truncatedSuffix"
+    
+    Write-Warning "[specify] Branch name exceeded GitHub's 244-byte limit"
+    Write-Warning "[specify] Original: $originalBranchName ($($originalBranchName.Length) bytes)"
+    Write-Warning "[specify] Truncated to: $branchName ($($branchName.Length) bytes)"
+}
+
+if ($hasGit) {
+    $branchCreated = $false
+    try {
+        git checkout -q -b $branchName 2>$null | Out-Null
+        if ($LASTEXITCODE -eq 0) {
+            $branchCreated = $true
+        }
+    } catch {
+        # Exception during git command
+    }
+
+    if (-not $branchCreated) {
+        # Check if branch already exists
+        $existingBranch = git branch --list $branchName 2>$null
+        if ($existingBranch) {
+            if ($Timestamp) {
+                Write-Error "Error: Branch '$branchName' already exists. Rerun to get a new timestamp or use a different -ShortName."
+            } else {
+                Write-Error "Error: Branch '$branchName' already exists. Please use a different feature name or specify a different number with -Number."
+            }
+            exit 1
+        } else {
+            Write-Error "Error: Failed to create git branch '$branchName'. Please check your git configuration and try again."
+            exit 1
+        }
+    }
+} else {
+    Write-Warning "[specify] Warning: Git repository not detected; skipped branch creation for $branchName"
+}
+
+$featureDir = Join-Path $specsDir $branchName
+New-Item -ItemType Directory -Path $featureDir -Force | Out-Null
+
+$template = Resolve-Template -TemplateName 'spec-template' -RepoRoot $repoRoot
+$specFile = Join-Path $featureDir 'spec.md'
+if ($template -and (Test-Path $template)) { 
+    Copy-Item $template $specFile -Force 
+} else { 
+    New-Item -ItemType File -Path $specFile | Out-Null 
+}
+
+# Set the SPECIFY_FEATURE environment variable for the current session
+$env:SPECIFY_FEATURE = $branchName
+
+if ($Json) {
+    $obj = [PSCustomObject]@{ 
+        BRANCH_NAME = $branchName
+        SPEC_FILE = $specFile
+        FEATURE_NUM = $featureNum
+        HAS_GIT = $hasGit
+    }
+    $obj | ConvertTo-Json -Compress
+} else {
+    Write-Output "BRANCH_NAME: $branchName"
+    Write-Output "SPEC_FILE: $specFile"
+    Write-Output "FEATURE_NUM: $featureNum"
+    Write-Output "HAS_GIT: $hasGit"
+    Write-Output "SPECIFY_FEATURE environment variable set to: $branchName"
+}
+

extensions/git/scripts/powershell/git-common.ps1

@@ -0,0 +1,33 @@
+#!/usr/bin/env pwsh
+# Git-specific common functions for the git extension.
+# Extracted from scripts/powershell/common.ps1 — contains only git-specific
+# branch validation and detection logic.
+
+function Test-HasGit {
+    try {
+        git rev-parse --show-toplevel 2>$null | Out-Null
+        return ($LASTEXITCODE -eq 0)
+    } catch {
+        return $false
+    }
+}
+
+function Test-FeatureBranch {
+    param(
+        [string]$Branch,
+        [bool]$HasGit = $true
+    )
+    
+    # For non-git repos, we can't enforce branch naming but still provide output
+    if (-not $HasGit) {
+        Write-Warning "[specify] Warning: Git repository not detected; skipped branch validation"
+        return $true
+    }
+    
+    if ($Branch -notmatch '^[0-9]{3}-' -and $Branch -notmatch '^\d{8}-\d{6}-') {
+        Write-Output "ERROR: Not on a feature branch. Current branch: $Branch"
+        Write-Output "Feature branches should be named like: 001-feature-name or 20260319-143022-feature-name"
+        return $false
+    }
+    return $true
+}

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "specify-cli"
-version = "0.3.2"
+version = "0.4.0"
 description = "Specify CLI, part of GitHub Spec Kit. A tool to bootstrap your projects for Spec-Driven Development (SDD)."
 requires-python = ">=3.11"
 dependencies = [
@@ -41,10 +41,9 @@ packages = ["src/specify_cli"]
 "templates/commands" = "specify_cli/core_pack/commands"
 "scripts/bash" = "specify_cli/core_pack/scripts/bash"
 "scripts/powershell" = "specify_cli/core_pack/scripts/powershell"
+"extensions/git" = "specify_cli/core_pack/extensions/git"
 ".github/workflows/scripts/create-release-packages.sh" = "specify_cli/core_pack/release_scripts/create-release-packages.sh"
 ".github/workflows/scripts/create-release-packages.ps1" = "specify_cli/core_pack/release_scripts/create-release-packages.ps1"
-# Official agent packs (embedded in wheel for zero-config offline operation)
-"src/specify_cli/core_pack/agents" = "specify_cli/core_pack/agents"
 
 [project.optional-dependencies]
 test = [

src/specify_cli/agents.py

@@ -47,12 +47,6 @@ class CommandRegistrar:
             "args": "$ARGUMENTS",
             "extension": ".md"
         },
-        "cursor-agent": {
-            "dir": ".cursor/commands",
-            "format": "markdown",
-            "args": "$ARGUMENTS",
-            "extension": ".md"
-        },
         "qwen": {
             "dir": ".qwen/commands",
             "format": "markdown",
@@ -213,7 +207,7 @@ class CommandRegistrar:
         if not fm:
             return ""
 
-        yaml_str = yaml.dump(fm, default_flow_style=False, sort_keys=False)
+        yaml_str = yaml.dump(fm, default_flow_style=False, sort_keys=False, allow_unicode=True)
         return f"---\n{yaml_str}---\n"
 
     def _adjust_script_paths(self, frontmatter: dict) -> dict:

src/specify_cli/core_pack/agents/agy/speckit-agent.yml

@@ -1,23 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "agy"
-  name: "Antigravity"
-  version: "1.0.0"
-  description: "Antigravity IDE for AI-assisted development"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: false
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['ide', 'antigravity']
-
-command_registration:
-  commands_dir: ".agent/commands"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: ".md"

src/specify_cli/core_pack/agents/amp/speckit-agent.yml

@@ -1,25 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "amp"
-  name: "Amp"
-  version: "1.0.0"
-  description: "Amp CLI for AI-assisted development"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: true
-  install_url: "https://ampcode.com/manual#install"
-  cli_tool: "amp"
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['cli', 'amp']
-
-command_registration:
-  commands_dir: ".agents/commands"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: ".md"

src/specify_cli/core_pack/agents/auggie/speckit-agent.yml

@@ -1,25 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "auggie"
-  name: "Auggie CLI"
-  version: "1.0.0"
-  description: "Auggie CLI for AI-assisted development"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: true
-  install_url: "https://docs.augmentcode.com/cli/setup-auggie/install-auggie-cli"
-  cli_tool: "auggie"
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['cli', 'augment', 'auggie']
-
-command_registration:
-  commands_dir: ".augment/commands"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: ".md"

src/specify_cli/core_pack/agents/bob/speckit-agent.yml

@@ -1,23 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "bob"
-  name: "IBM Bob"
-  version: "1.0.0"
-  description: "IBM Bob IDE for AI-assisted development"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: false
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['ide', 'ibm', 'bob']
-
-command_registration:
-  commands_dir: ".bob/commands"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: ".md"

src/specify_cli/core_pack/agents/claude/speckit-agent.yml

@@ -1,25 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "claude"
-  name: "Claude Code"
-  version: "1.0.0"
-  description: "Anthropic's Claude Code CLI for AI-assisted development"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: true
-  install_url: "https://docs.anthropic.com/en/docs/claude-code/setup"
-  cli_tool: "claude"
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['cli', 'anthropic', 'claude']
-
-command_registration:
-  commands_dir: ".claude/commands"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: ".md"

src/specify_cli/core_pack/agents/codebuddy/speckit-agent.yml

@@ -1,25 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "codebuddy"
-  name: "CodeBuddy"
-  version: "1.0.0"
-  description: "CodeBuddy CLI for AI-assisted development"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: true
-  install_url: "https://www.codebuddy.ai/cli"
-  cli_tool: "codebuddy"
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['cli', 'codebuddy']
-
-command_registration:
-  commands_dir: ".codebuddy/commands"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: ".md"

src/specify_cli/core_pack/agents/codex/speckit-agent.yml

@@ -1,25 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "codex"
-  name: "Codex CLI"
-  version: "1.0.0"
-  description: "OpenAI Codex CLI with project skills support"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: true
-  install_url: "https://github.com/openai/codex"
-  cli_tool: "codex"
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['cli', 'openai', 'codex', 'skills']
-
-command_registration:
-  commands_dir: ".agents/skills"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: "/SKILL.md"

src/specify_cli/core_pack/agents/copilot/speckit-agent.yml

@@ -1,23 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "copilot"
-  name: "GitHub Copilot"
-  version: "1.0.0"
-  description: "GitHub Copilot for AI-assisted development in VS Code"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: false
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['ide', 'github', 'copilot']
-
-command_registration:
-  commands_dir: ".github/agents"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: ".agent.md"

src/specify_cli/core_pack/agents/cursor-agent/speckit-agent.yml

@@ -1,23 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "cursor-agent"
-  name: "Cursor"
-  version: "1.0.0"
-  description: "Cursor IDE for AI-assisted development"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: false
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['ide', 'cursor']
-
-command_registration:
-  commands_dir: ".cursor/commands"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: ".md"

src/specify_cli/core_pack/agents/gemini/speckit-agent.yml

@@ -1,25 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "gemini"
-  name: "Gemini CLI"
-  version: "1.0.0"
-  description: "Google's Gemini CLI for AI-assisted development"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: true
-  install_url: "https://github.com/google-gemini/gemini-cli"
-  cli_tool: "gemini"
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['cli', 'google', 'gemini']
-
-command_registration:
-  commands_dir: ".gemini/commands"
-  format: "toml"
-  arg_placeholder: "{{args}}"
-  file_extension: ".toml"

src/specify_cli/core_pack/agents/iflow/speckit-agent.yml

@@ -1,25 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "iflow"
-  name: "iFlow CLI"
-  version: "1.0.0"
-  description: "iFlow CLI by iflow-ai for AI-assisted development"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: true
-  install_url: "https://docs.iflow.cn/en/cli/quickstart"
-  cli_tool: "iflow"
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['cli', 'iflow']
-
-command_registration:
-  commands_dir: ".iflow/commands"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: ".md"

src/specify_cli/core_pack/agents/junie/speckit-agent.yml

@@ -1,25 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "junie"
-  name: "Junie"
-  version: "1.0.0"
-  description: "Junie by JetBrains for AI-assisted development"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: true
-  install_url: "https://junie.jetbrains.com/"
-  cli_tool: "junie"
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['cli', 'jetbrains', 'junie']
-
-command_registration:
-  commands_dir: ".junie/commands"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: ".md"

src/specify_cli/core_pack/agents/kilocode/speckit-agent.yml

@@ -1,23 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "kilocode"
-  name: "Kilo Code"
-  version: "1.0.0"
-  description: "Kilo Code IDE for AI-assisted development"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: false
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['ide', 'kilocode']
-
-command_registration:
-  commands_dir: ".kilocode/workflows"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: ".md"

src/specify_cli/core_pack/agents/kimi/speckit-agent.yml

@@ -1,25 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "kimi"
-  name: "Kimi Code"
-  version: "1.0.0"
-  description: "Kimi Code CLI by Moonshot AI with skills support"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: true
-  install_url: "https://code.kimi.com/"
-  cli_tool: "kimi"
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['cli', 'moonshot', 'kimi', 'skills']
-
-command_registration:
-  commands_dir: ".kimi/skills"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: "/SKILL.md"

src/specify_cli/core_pack/agents/kiro-cli/speckit-agent.yml

@@ -1,25 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "kiro-cli"
-  name: "Kiro CLI"
-  version: "1.0.0"
-  description: "Kiro CLI by Amazon for AI-assisted development"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: true
-  install_url: "https://kiro.dev/docs/cli/"
-  cli_tool: "kiro-cli"
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['cli', 'amazon', 'kiro']
-
-command_registration:
-  commands_dir: ".kiro/prompts"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: ".md"

src/specify_cli/core_pack/agents/opencode/speckit-agent.yml

@@ -1,25 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "opencode"
-  name: "opencode"
-  version: "1.0.0"
-  description: "opencode CLI for AI-assisted development"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: true
-  install_url: "https://opencode.ai"
-  cli_tool: "opencode"
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['cli', 'opencode']
-
-command_registration:
-  commands_dir: ".opencode/command"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: ".md"

src/specify_cli/core_pack/agents/pi/speckit-agent.yml

@@ -1,25 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "pi"
-  name: "Pi Coding Agent"
-  version: "1.0.0"
-  description: "Pi terminal coding agent for AI-assisted development"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: true
-  install_url: "https://www.npmjs.com/package/@mariozechner/pi-coding-agent"
-  cli_tool: "pi"
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['cli', 'pi']
-
-command_registration:
-  commands_dir: ".pi/prompts"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: ".md"

src/specify_cli/core_pack/agents/qodercli/speckit-agent.yml

@@ -1,25 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "qodercli"
-  name: "Qoder CLI"
-  version: "1.0.0"
-  description: "Qoder CLI for AI-assisted development"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: true
-  install_url: "https://qoder.com/cli"
-  cli_tool: "qodercli"
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['cli', 'qoder']
-
-command_registration:
-  commands_dir: ".qoder/commands"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: ".md"

src/specify_cli/core_pack/agents/qwen/speckit-agent.yml

@@ -1,25 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "qwen"
-  name: "Qwen Code"
-  version: "1.0.0"
-  description: "Alibaba's Qwen Code CLI for AI-assisted development"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: true
-  install_url: "https://github.com/QwenLM/qwen-code"
-  cli_tool: "qwen"
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['cli', 'alibaba', 'qwen']
-
-command_registration:
-  commands_dir: ".qwen/commands"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: ".md"

src/specify_cli/core_pack/agents/roo/speckit-agent.yml

@@ -1,23 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "roo"
-  name: "Roo Code"
-  version: "1.0.0"
-  description: "Roo Code IDE for AI-assisted development"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: false
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['ide', 'roo']
-
-command_registration:
-  commands_dir: ".roo/commands"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: ".md"

src/specify_cli/core_pack/agents/shai/speckit-agent.yml

@@ -1,25 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "shai"
-  name: "SHAI"
-  version: "1.0.0"
-  description: "SHAI CLI for AI-assisted development"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: true
-  install_url: "https://github.com/ovh/shai"
-  cli_tool: "shai"
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['cli', 'ovh', 'shai']
-
-command_registration:
-  commands_dir: ".shai/commands"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: ".md"

src/specify_cli/core_pack/agents/tabnine/speckit-agent.yml

@@ -1,25 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "tabnine"
-  name: "Tabnine CLI"
-  version: "1.0.0"
-  description: "Tabnine CLI for AI-assisted development"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: true
-  install_url: "https://docs.tabnine.com/main/getting-started/tabnine-cli"
-  cli_tool: "tabnine"
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['cli', 'tabnine']
-
-command_registration:
-  commands_dir: ".tabnine/agent/commands"
-  format: "toml"
-  arg_placeholder: "{{args}}"
-  file_extension: ".toml"

src/specify_cli/core_pack/agents/trae/speckit-agent.yml

@@ -1,23 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "trae"
-  name: "Trae"
-  version: "1.0.0"
-  description: "Trae IDE for AI-assisted development"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: false
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['ide', 'trae']
-
-command_registration:
-  commands_dir: ".trae/rules"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: ".md"

src/specify_cli/core_pack/agents/vibe/speckit-agent.yml

@@ -1,25 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "vibe"
-  name: "Mistral Vibe"
-  version: "1.0.0"
-  description: "Mistral Vibe CLI for AI-assisted development"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: true
-  install_url: "https://github.com/mistralai/mistral-vibe"
-  cli_tool: "vibe"
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['cli', 'mistral', 'vibe']
-
-command_registration:
-  commands_dir: ".vibe/prompts"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: ".md"

src/specify_cli/core_pack/agents/windsurf/speckit-agent.yml

@@ -1,23 +0,0 @@
-schema_version: "1.0"
-
-agent:
-  id: "windsurf"
-  name: "Windsurf"
-  version: "1.0.0"
-  description: "Windsurf IDE for AI-assisted development"
-  author: "github"
-  license: "MIT"
-
-runtime:
-  requires_cli: false
-
-requires:
-  speckit_version: ">=0.1.0"
-
-tags: ['ide', 'windsurf']
-
-command_registration:
-  commands_dir: ".windsurf/workflows"
-  format: "markdown"
-  arg_placeholder: "$ARGUMENTS"
-  file_extension: ".md"

src/specify_cli/extensions.py

@@ -975,8 +975,8 @@ class ExtensionCatalog:
         if not config_path.exists():
             return None
         try:
-            data = yaml.safe_load(config_path.read_text()) or {}
+            data = yaml.safe_load(config_path.read_text(encoding="utf-8")) or {}
-        except (yaml.YAMLError, OSError) as e:
+        except (yaml.YAMLError, OSError, UnicodeError) as e:
             raise ValidationError(
                 f"Failed to read catalog config {config_path}: {e}"
             )
@@ -1467,8 +1467,8 @@ class ConfigManager:
             return {}
 
         try:
-            return yaml.safe_load(file_path.read_text()) or {}
+            return yaml.safe_load(file_path.read_text(encoding="utf-8")) or {}
-        except (yaml.YAMLError, OSError):
+        except (yaml.YAMLError, OSError, UnicodeError):
             return {}
 
     def _get_extension_defaults(self) -> Dict[str, Any]:
@@ -1659,8 +1659,8 @@ class HookExecutor:
             }
 
         try:
-            return yaml.safe_load(self.config_file.read_text()) or {}
+            return yaml.safe_load(self.config_file.read_text(encoding="utf-8")) or {}
-        except (yaml.YAMLError, OSError):
+        except (yaml.YAMLError, OSError, UnicodeError):
             return {
                 "installed": [],
                 "settings": {"auto_execute_hooks": True},
@@ -1675,7 +1675,8 @@ class HookExecutor:
         """
         self.config_file.parent.mkdir(parents=True, exist_ok=True)
         self.config_file.write_text(
-            yaml.dump(config, default_flow_style=False, sort_keys=False)
+            yaml.dump(config, default_flow_style=False, sort_keys=False, allow_unicode=True),
+            encoding="utf-8",
         )
 
     def register_hooks(self, manifest: ExtensionManifest):

src/specify_cli/presets.py

@@ -1062,8 +1062,8 @@ class PresetCatalog:
         if not config_path.exists():
             return None
         try:
-            data = yaml.safe_load(config_path.read_text()) or {}
+            data = yaml.safe_load(config_path.read_text(encoding="utf-8")) or {}
-        except (yaml.YAMLError, OSError) as e:
+        except (yaml.YAMLError, OSError, UnicodeError) as e:
             raise PresetValidationError(
                 f"Failed to read catalog config {config_path}: {e}"
             )

templates/commands/specify.md

@@ -73,12 +73,40 @@ Given that feature description, do this:
      - "Create a dashboard for analytics" → "analytics-dashboard"
      - "Fix payment processing timeout bug" → "fix-payment-timeout"
 
-2. **Create the feature branch** by running the script with `--short-name` (and `--json`). In sequential mode, do NOT pass `--number` — the script auto-detects the next available number. In timestamp mode, the script generates a `YYYYMMDD-HHMMSS` prefix automatically:
+2. **Create the feature branch** (unless already handled by a `before_specify` hook — see Pre-Execution Checks above). If a mandatory `before_specify` hook for `speckit.git.feature` already executed and created the branch, **skip this step entirely** and use the branch/spec information from the hook result. Otherwise:
 
-   **Branch numbering mode**: Before running the script, check if `.specify/init-options.json` exists and read the `branch_numbering` value.
+   **Git extension check**: Before running the branch creation script, check if the git extension is enabled:
+   - Check if `.specify/extensions/.registry` exists (a single JSON file tracking all extensions)
+   - If it exists, read the JSON and look for an `extensions.git` entry
+   - **Only skip branching** when `extensions.git.enabled` is **present and explicitly `false`**. In all other cases — including when the registry file is missing, when `extensions.git` has no entry, or when `"enabled"` is `true` or absent — proceed with normal branch creation (extension script if present, else core `{SCRIPT}` fallback)
+   - If the git extension is **disabled** (explicitly `"enabled": false`), **skip branch creation entirely** — do **not** run the branch creation script. Instead:
+     - Derive a spec directory name from the short name, e.g. `specs/<short-name>/`
+     - Explicitly set the following variables so later steps can use them:
+       - `FEATURE_DIR="specs/<short-name>"`
+       - `SPEC_FILE="$FEATURE_DIR/spec.md"`
+     - Ensure the directory and spec file exist:
+       - Bash:
+         - `mkdir -p "$FEATURE_DIR"`
+         - `touch "$SPEC_FILE"`
+       - PowerShell:
+         - `New-Item -ItemType Directory -Path $FEATURE_DIR -Force | Out-Null`
+         - `New-Item -ItemType File -Path $SPEC_FILE -Force | Out-Null`
+     - Then proceed directly to step 3 using `FEATURE_DIR` and `SPEC_FILE`
+   - If the registry file does not exist, proceed with branch creation using the default behavior (backward compatibility)
+
+   Run the script with `--short-name` (and `--json`). In sequential mode, do NOT pass `--number` — the script auto-detects the next available number. In timestamp mode, the script generates a `YYYYMMDD-HHMMSS` prefix automatically:
+
+   **Branch numbering mode**: Before running the script, determine the branch numbering strategy:
+   1. Check `.specify/extensions/git/git-config.yml` for `branch_numbering` value (extension config takes precedence)
+   2. If not found, check `.specify/init-options.json` for `branch_numbering` value (backward compatibility)
+   3. Default to `sequential` if neither exists
    - If `"timestamp"`, add `--timestamp` (Bash) or `-Timestamp` (PowerShell) to the script invocation
    - If `"sequential"` or absent, do not add any extra flag (default behavior)
 
+   **Script resolution**: Use the extension's bundled scripts when available, falling back to core scripts:
+   - **Bash**: If `.specify/extensions/git/scripts/bash/create-new-feature.sh` exists, use it; otherwise, fall back to `{SCRIPT}`
+   - **PowerShell**: If `.specify/extensions/git/scripts/powershell/create-new-feature.ps1` exists, use it; otherwise, fall back to `{SCRIPT}`
+
    - Bash example: `{SCRIPT} --json --short-name "user-auth" "Add user authentication"`
    - Bash (timestamp): `{SCRIPT} --json --timestamp --short-name "user-auth" "Add user authentication"`
    - PowerShell example: `{SCRIPT} -Json -ShortName "user-auth" "Add user authentication"`

tests/test_ai_skills.py

@@ -11,10 +11,12 @@ Tests cover:
 """
 
 import re
+import zipfile
 import pytest
 import tempfile
 import shutil
 import yaml
+import typer
 from pathlib import Path
 from unittest.mock import patch
 
@@ -720,8 +722,8 @@ class TestNewProjectCommandSkip:
         mock_skills.assert_not_called()
         assert (target / ".agents" / "skills" / "speckit-specify" / "SKILL.md").exists()
 
-    def test_codex_native_skills_missing_fails_clearly(self, tmp_path):
+    def test_codex_native_skills_missing_falls_back_then_fails_cleanly(self, tmp_path):
-        """Codex native skills init should fail if bundled skills are missing."""
+        """Codex should attempt fallback conversion when bundled skills are missing."""
         from typer.testing import CliRunner
 
         runner = CliRunner()
@@ -730,7 +732,7 @@ class TestNewProjectCommandSkip:
         with patch("specify_cli.download_and_extract_template", lambda *args, **kwargs: None), \
              patch("specify_cli.ensure_executable_scripts"), \
              patch("specify_cli.ensure_constitution_from_template"), \
-             patch("specify_cli.install_ai_skills") as mock_skills, \
+             patch("specify_cli.install_ai_skills", return_value=False) as mock_skills, \
              patch("specify_cli.is_git_repo", return_value=False), \
              patch("specify_cli.shutil.which", return_value="/usr/bin/codex"):
             result = runner.invoke(
@@ -739,11 +741,13 @@ class TestNewProjectCommandSkip:
             )
 
         assert result.exit_code == 1
-        mock_skills.assert_not_called()
+        mock_skills.assert_called_once()
+        assert mock_skills.call_args.kwargs.get("overwrite_existing") is True
         assert "Expected bundled agent skills" in result.output
+        assert "fallback conversion failed" in result.output
 
     def test_codex_native_skills_ignores_non_speckit_skill_dirs(self, tmp_path):
-        """Non-spec-kit SKILL.md files should not satisfy Codex bundled-skills validation."""
+        """Non-spec-kit SKILL.md files should trigger fallback conversion, not hard-fail."""
         from typer.testing import CliRunner
 
         runner = CliRunner()
@@ -757,7 +761,7 @@ class TestNewProjectCommandSkip:
         with patch("specify_cli.download_and_extract_template", side_effect=fake_download), \
              patch("specify_cli.ensure_executable_scripts"), \
              patch("specify_cli.ensure_constitution_from_template"), \
-             patch("specify_cli.install_ai_skills") as mock_skills, \
+             patch("specify_cli.install_ai_skills", return_value=True) as mock_skills, \
              patch("specify_cli.is_git_repo", return_value=False), \
              patch("specify_cli.shutil.which", return_value="/usr/bin/codex"):
             result = runner.invoke(
@@ -765,9 +769,100 @@ class TestNewProjectCommandSkip:
                 ["init", str(target), "--ai", "codex", "--ai-skills", "--script", "sh", "--no-git"],
             )
 
-        assert result.exit_code == 1
+        assert result.exit_code == 0
-        mock_skills.assert_not_called()
+        mock_skills.assert_called_once()
-        assert "Expected bundled agent skills" in result.output
+        assert mock_skills.call_args.kwargs.get("overwrite_existing") is True
+
+    def test_codex_ai_skills_here_mode_preserves_existing_codex_dir(self, tmp_path, monkeypatch):
+        """Codex --here skills init should not delete a pre-existing .codex directory."""
+        from typer.testing import CliRunner
+
+        runner = CliRunner()
+        target = tmp_path / "codex-preserve-here"
+        target.mkdir()
+        existing_prompts = target / ".codex" / "prompts"
+        existing_prompts.mkdir(parents=True)
+        (existing_prompts / "custom.md").write_text("custom")
+        monkeypatch.chdir(target)
+
+        with patch("specify_cli.download_and_extract_template", return_value=target), \
+             patch("specify_cli.ensure_executable_scripts"), \
+             patch("specify_cli.ensure_constitution_from_template"), \
+             patch("specify_cli.install_ai_skills", return_value=True), \
+             patch("specify_cli.is_git_repo", return_value=True), \
+             patch("specify_cli.shutil.which", return_value="/usr/bin/codex"):
+            result = runner.invoke(
+                app,
+                ["init", "--here", "--ai", "codex", "--ai-skills", "--script", "sh", "--no-git"],
+                input="y\n",
+            )
+
+        assert result.exit_code == 0
+        assert (target / ".codex").exists()
+        assert (existing_prompts / "custom.md").exists()
+
+    def test_codex_ai_skills_fresh_dir_does_not_create_codex_dir(self, tmp_path):
+        """Fresh-directory Codex skills init should not leave legacy .codex from archive."""
+        target = tmp_path / "fresh-codex-proj"
+        archive = tmp_path / "codex-template.zip"
+
+        with zipfile.ZipFile(archive, "w") as zf:
+            zf.writestr("template-root/.codex/prompts/speckit.specify.md", "legacy")
+            zf.writestr("template-root/.specify/templates/constitution-template.md", "constitution")
+
+        fake_meta = {
+            "filename": archive.name,
+            "size": archive.stat().st_size,
+            "release": "vtest",
+            "asset_url": "https://example.invalid/template.zip",
+        }
+
+        with patch("specify_cli.download_template_from_github", return_value=(archive, fake_meta)):
+            specify_cli.download_and_extract_template(
+                target,
+                "codex",
+                "sh",
+                is_current_dir=False,
+                skip_legacy_codex_prompts=True,
+                verbose=False,
+            )
+
+        assert target.exists()
+        assert (target / ".specify").exists()
+        assert not (target / ".codex").exists()
+
+    @pytest.mark.parametrize("is_current_dir", [False, True])
+    def test_download_and_extract_template_blocks_zip_path_traversal(self, tmp_path, monkeypatch, is_current_dir):
+        """Extraction should reject ZIP members escaping the target directory."""
+        target = (tmp_path / "here-proj") if is_current_dir else (tmp_path / "new-proj")
+        if is_current_dir:
+            target.mkdir()
+            monkeypatch.chdir(target)
+
+        archive = tmp_path / "malicious-template.zip"
+        with zipfile.ZipFile(archive, "w") as zf:
+            zf.writestr("../evil.txt", "pwned")
+            zf.writestr("template-root/.specify/templates/constitution-template.md", "constitution")
+
+        fake_meta = {
+            "filename": archive.name,
+            "size": archive.stat().st_size,
+            "release": "vtest",
+            "asset_url": "https://example.invalid/template.zip",
+        }
+
+        with patch("specify_cli.download_template_from_github", return_value=(archive, fake_meta)):
+            with pytest.raises(typer.Exit):
+                specify_cli.download_and_extract_template(
+                    target,
+                    "codex",
+                    "sh",
+                    is_current_dir=is_current_dir,
+                    skip_legacy_codex_prompts=True,
+                    verbose=False,
+                )
+
+        assert not (tmp_path / "evil.txt").exists()
 
     def test_commands_preserved_when_skills_fail(self, tmp_path):
         """If skills fail, commands should NOT be removed (safety net)."""
@@ -859,6 +954,21 @@ class TestSkipIfExists:
         # All 4 templates should produce skills (specify, plan, tasks, empty_fm)
         assert len(skill_dirs) == 4
 
+    def test_existing_skill_overwritten_when_enabled(self, project_dir, templates_dir):
+        """When overwrite_existing=True, pre-existing SKILL.md should be replaced."""
+        skill_dir = project_dir / ".claude" / "skills" / "speckit-specify"
+        skill_dir.mkdir(parents=True)
+        custom_content = "# My Custom Specify Skill\nUser-modified content\n"
+        skill_file = skill_dir / "SKILL.md"
+        skill_file.write_text(custom_content)
+
+        result = install_ai_skills(project_dir, "claude", overwrite_existing=True)
+
+        assert result is True
+        updated_content = skill_file.read_text()
+        assert updated_content != custom_content
+        assert "name: speckit-specify" in updated_content
+
 
 # ===== SKILL_DESCRIPTIONS Coverage Tests =====
 

tests/test_branch_numbering.py

@@ -87,3 +87,84 @@ class TestBranchNumberingValidation:
         result = runner.invoke(app, ["init", str(tmp_path / "proj"), "--ai", "claude", "--branch-numbering", "timestamp", "--ignore-agent-tools"])
         assert result.exit_code == 0
         assert "Invalid --branch-numbering" not in (result.output or "")
+
+
+class TestGitExtensionAutoInstall:
+    """Tests for bundled git extension auto-install during specify init."""
+
+    def test_git_extension_installed_during_init(self, tmp_path: Path, monkeypatch):
+        """Verify that `specify init` auto-installs the bundled git extension."""
+        from typer.testing import CliRunner
+        from specify_cli import app
+
+        def _fake_download(project_path, *args, **kwargs):
+            Path(project_path).mkdir(parents=True, exist_ok=True)
+
+        monkeypatch.setattr("specify_cli.download_and_extract_template", _fake_download)
+
+        project_dir = tmp_path / "proj"
+        runner = CliRunner()
+        result = runner.invoke(app, ["init", str(project_dir), "--ai", "claude", "--ignore-agent-tools"])
+        assert result.exit_code == 0
+
+        # Extension files should exist
+        ext_dir = project_dir / ".specify" / "extensions" / "git"
+        assert ext_dir.is_dir(), "git extension directory not created"
+        assert (ext_dir / "extension.yml").is_file(), "extension.yml not installed"
+
+        # Registry should contain the git extension
+        registry_file = project_dir / ".specify" / "extensions" / ".registry"
+        assert registry_file.is_file(), "extension registry not created"
+        registry = json.loads(registry_file.read_text())
+        assert "git" in registry.get("extensions", {}), "git not in registry"
+        assert registry["extensions"]["git"]["enabled"] is True
+
+    def test_git_extension_noop_when_already_installed(self, tmp_path: Path):
+        """_install_bundled_git_extension should no-op if git is already installed."""
+        from specify_cli import _install_bundled_git_extension
+        from specify_cli.extensions import ExtensionManager
+
+        project_dir = tmp_path / "proj"
+        (project_dir / ".specify").mkdir(parents=True)
+
+        # First install
+        result1 = _install_bundled_git_extension(project_dir)
+        assert result1 is True
+
+        # Second install should also succeed (no-op)
+        result2 = _install_bundled_git_extension(project_dir)
+        assert result2 is True
+
+        # Only one entry in registry
+        manager = ExtensionManager(project_dir)
+        assert manager.registry.is_installed("git")
+
+    def test_git_extension_reinstalls_when_directory_missing(self, tmp_path: Path):
+        """_install_bundled_git_extension should reinstall if registry says installed but directory is gone."""
+        import shutil
+        from specify_cli import _install_bundled_git_extension
+        from specify_cli.extensions import ExtensionManager
+
+        project_dir = tmp_path / "proj"
+        (project_dir / ".specify").mkdir(parents=True)
+
+        # First install
+        result1 = _install_bundled_git_extension(project_dir)
+        assert result1 is True
+
+        ext_dir = project_dir / ".specify" / "extensions" / "git"
+        assert ext_dir.is_dir()
+
+        # Simulate stale registry: delete extension directory but keep registry
+        shutil.rmtree(ext_dir)
+        assert not ext_dir.exists()
+
+        # Registry still says installed
+        manager = ExtensionManager(project_dir)
+        assert manager.registry.is_installed("git")
+
+        # Re-install should detect missing directory and reinstall
+        result2 = _install_bundled_git_extension(project_dir)
+        assert result2 is True
+        assert ext_dir.is_dir(), "extension directory should be reinstalled"
+        assert (ext_dir / "extension.yml").is_file(), "extension.yml should be reinstalled"

tests/test_extensions.py

@@ -747,6 +747,18 @@ $ARGUMENTS
         assert output.endswith("---\n")
         assert "description: Test command" in output
 
+    def test_render_frontmatter_unicode(self):
+        """Test rendering frontmatter preserves non-ASCII characters."""
+        frontmatter = {
+            "description": "Prüfe Konformität der Implementierung"
+        }
+
+        registrar = CommandRegistrar()
+        output = registrar.render_frontmatter(frontmatter)
+
+        assert "Prüfe Konformität" in output
+        assert "\\u" not in output
+
     def test_register_commands_for_claude(self, extension_dir, project_dir):
         """Test registering commands for Claude agent."""
         # Create .claude directory