chore: bump version to 0.3.2

Add conduct extension to community catalog (#1908 )
- Extension ID: conduct - Version: 1.0.0 - Author: twbrandon7 - Description: Executes a single spec-kit phase via sub-agent delegation to reduce context pollution.
2026-03-20 12:23:09 +00:00 · 2026-03-19 13:24:09 +00:00 · 2026-03-19 08:12:29 -05:00 · 2026-03-19 08:11:31 -05:00 · 2026-03-19 07:48:48 -05:00 · 2026-03-19 06:44:22 -05:00
31 changed files with 1554 additions and 112 deletions
--- a/.devcontainer/post-create.sh
+++ b/.devcontainer/post-create.sh
@@ -51,6 +51,10 @@ echo -e "\n🤖 Installing OpenCode CLI..."
 run_command "npm install -g opencode-ai@latest"
 echo "✅ Done"
 echo -e "\n🤖 Installing Pi Coding Agent..."
 run_command "npm install -g @mariozechner/pi-coding-agent@latest"
 echo "✅ Done"
 echo -e "\n🤖 Installing Kiro CLI..."
 # https://kiro.dev/docs/cli/
 KIRO_INSTALLER_URL="https://kiro.dev/install.sh"
--- a/.github/workflows/scripts/create-github-release.sh
+++ b/.github/workflows/scripts/create-github-release.sh
@@ -60,6 +60,10 @@ gh release create "$VERSION" \
  .genreleases/spec-kit-template-kimi-ps-"$VERSION".zip \
  .genreleases/spec-kit-template-trae-sh-"$VERSION".zip \
  .genreleases/spec-kit-template-trae-ps-"$VERSION".zip \
  .genreleases/spec-kit-template-pi-sh-"$VERSION".zip \
  .genreleases/spec-kit-template-pi-ps-"$VERSION".zip \
  .genreleases/spec-kit-template-iflow-sh-"$VERSION".zip \
  .genreleases/spec-kit-template-iflow-ps-"$VERSION".zip \
  .genreleases/spec-kit-template-generic-sh-"$VERSION".zip \
  .genreleases/spec-kit-template-generic-ps-"$VERSION".zip \
  --title "Spec Kit Templates - $VERSION_NO_V" \
--- a/.github/workflows/scripts/create-release-packages.ps1
+++ b/.github/workflows/scripts/create-release-packages.ps1
@@ -14,7 +14,7 @@
 .PARAMETER Agents
    Comma or space separated subset of agents to build (default: all)
-    Valid agents: claude, gemini, copilot, cursor-agent, qwen, opencode, windsurf, codex, kilocode, auggie, roo, codebuddy, amp, kiro-cli, bob, qodercli, shai, tabnine, agy, vibe, kimi, trae, generic
+    Valid agents: claude, gemini, copilot, cursor-agent, qwen, opencode, windsurf, codex, kilocode, auggie, roo, codebuddy, amp, kiro-cli, bob, qodercli, shai, tabnine, agy, vibe, kimi, trae, pi, iflow, generic
 .PARAMETER Scripts
    Comma or space separated subset of script types to build (default: both)
@@ -459,6 +459,14 @@ function Build-Variant {
            New-Item -ItemType Directory -Force -Path $rulesDir | Out-Null
            Generate-Commands -Agent 'trae' -Extension 'md' -ArgFormat '$ARGUMENTS' -OutputDir $rulesDir -ScriptVariant $Script
        }
        'pi' {
            $cmdDir = Join-Path $baseDir ".pi/prompts"
            Generate-Commands -Agent 'pi' -Extension 'md' -ArgFormat '$ARGUMENTS' -OutputDir $cmdDir -ScriptVariant $Script
        }
        'iflow' {
            $cmdDir = Join-Path $baseDir ".iflow/commands"
            Generate-Commands -Agent 'iflow' -Extension 'md' -ArgFormat '$ARGUMENTS' -OutputDir $cmdDir -ScriptVariant $Script
        }
        'generic' {
            $cmdDir = Join-Path $baseDir ".speckit/commands"
            Generate-Commands -Agent 'generic' -Extension 'md' -ArgFormat '$ARGUMENTS' -OutputDir $cmdDir -ScriptVariant $Script
@@ -475,7 +483,7 @@ function Build-Variant {
 }
 # Define all agents and scripts
-$AllAgents = @('claude', 'gemini', 'copilot', 'cursor-agent', 'qwen', 'opencode', 'windsurf', 'codex', 'kilocode', 'auggie', 'roo', 'codebuddy', 'amp', 'kiro-cli', 'bob', 'qodercli', 'shai', 'tabnine', 'agy', 'vibe', 'kimi', 'trae', 'generic')
+$AllAgents = @('claude', 'gemini', 'copilot', 'cursor-agent', 'qwen', 'opencode', 'windsurf', 'codex', 'kilocode', 'auggie', 'roo', 'codebuddy', 'amp', 'kiro-cli', 'bob', 'qodercli', 'shai', 'tabnine', 'agy', 'vibe', 'kimi', 'trae', 'pi', 'iflow', 'generic')
 $AllScripts = @('sh', 'ps')
 function Normalize-List {
--- a/.github/workflows/scripts/create-release-packages.sh
+++ b/.github/workflows/scripts/create-release-packages.sh
@@ -6,7 +6,7 @@ set -euo pipefail
 # Usage: .github/workflows/scripts/create-release-packages.sh <version>
 #   Version argument should include leading 'v'.
 #   Optionally set AGENTS and/or SCRIPTS env vars to limit what gets built.
-#     AGENTS  : space or comma separated subset of: claude gemini copilot cursor-agent qwen opencode windsurf codex kilocode auggie roo codebuddy amp shai tabnine kiro-cli agy bob vibe qodercli kimi trae generic (default: all)
+#     AGENTS  : space or comma separated subset of: claude gemini copilot cursor-agent qwen opencode windsurf codex kilocode auggie roo codebuddy amp shai tabnine kiro-cli agy bob vibe qodercli kimi trae pi iflow generic (default: all)
 #     SCRIPTS : space or comma separated subset of: sh ps (default: both)
 #   Examples:
 #     AGENTS=claude SCRIPTS=sh $0 v0.2.0
@@ -294,6 +294,12 @@ build_variant() {
    trae)
      mkdir -p "$base_dir/.trae/rules"
      generate_commands trae md "\$ARGUMENTS" "$base_dir/.trae/rules" "$script" ;;
    pi)
      mkdir -p "$base_dir/.pi/prompts"
      generate_commands pi md "\$ARGUMENTS" "$base_dir/.pi/prompts" "$script" ;;
    iflow)
      mkdir -p "$base_dir/.iflow/commands"
      generate_commands iflow md "\$ARGUMENTS" "$base_dir/.iflow/commands" "$script" ;;
    generic)
      mkdir -p "$base_dir/.speckit/commands"
      generate_commands generic md "\$ARGUMENTS" "$base_dir/.speckit/commands" "$script" ;;
@@ -303,7 +309,7 @@ build_variant() {
 }
 # Determine agent list
-ALL_AGENTS=(claude gemini copilot cursor-agent qwen opencode windsurf codex kilocode auggie roo codebuddy amp shai tabnine kiro-cli agy bob vibe qodercli kimi trae generic)
+ALL_AGENTS=(claude gemini copilot cursor-agent qwen opencode windsurf codex kilocode auggie roo codebuddy amp shai tabnine kiro-cli agy bob vibe qodercli kimi trae pi iflow generic)
 ALL_SCRIPTS=(sh ps)
 norm_list() {
--- a/AGENTS.md
+++ b/AGENTS.md
@@ -33,11 +33,11 @@ Specify supports multiple AI agents by generating agent-specific command files a
 | **Cursor**                 | `.cursor/commands/`    | Markdown | `cursor-agent`  | Cursor CLI                  |
 | **Qwen Code**              | `.qwen/commands/`      | Markdown | `qwen`          | Alibaba's Qwen Code CLI     |
 | **opencode**               | `.opencode/command/`   | Markdown | `opencode`      | opencode CLI                |
-| **Codex CLI**              | `.codex/commands/`     | Markdown | `codex`         | Codex CLI                   |
+| **Codex CLI**              | `.codex/prompts/`      | Markdown | `codex`         | Codex CLI                   |
 | **Windsurf**               | `.windsurf/workflows/` | Markdown | N/A (IDE-based) | Windsurf IDE workflows      |
-| **Kilo Code**              | `.kilocode/rules/`     | Markdown | N/A (IDE-based) | Kilo Code IDE               |
+| **Kilo Code**              | `.kilocode/workflows/` | Markdown | N/A (IDE-based) | Kilo Code IDE               |
-| **Auggie CLI**             | `.augment/rules/`      | Markdown | `auggie`        | Auggie CLI                  |
+| **Auggie CLI**             | `.augment/commands/`   | Markdown | `auggie`        | Auggie CLI                  |
-| **Roo Code**               | `.roo/rules/`          | Markdown | N/A (IDE-based) | Roo Code IDE                |
+| **Roo Code**               | `.roo/commands/`       | Markdown | N/A (IDE-based) | Roo Code IDE                |
 | **CodeBuddy CLI**          | `.codebuddy/commands/` | Markdown | `codebuddy`     | CodeBuddy CLI               |
 | **Qoder CLI**              | `.qoder/commands/`     | Markdown | `qodercli`      | Qoder CLI                   |
 | **Kiro CLI**               | `.kiro/prompts/`       | Markdown | `kiro-cli`      | Kiro CLI                    |
@@ -45,6 +45,8 @@ Specify supports multiple AI agents by generating agent-specific command files a
 | **SHAI**                   | `.shai/commands/`      | Markdown | `shai`          | SHAI CLI                    |
 | **Tabnine CLI**            | `.tabnine/agent/commands/` | TOML | `tabnine`       | Tabnine CLI                 |
 | **Kimi Code**              | `.kimi/skills/`        | Markdown | `kimi`          | Kimi Code CLI (Moonshot AI) |
 | **Pi Coding Agent**        | `.pi/prompts/`         | Markdown | `pi`            | Pi terminal coding agent    |
 | **iFlow CLI**              | `.iflow/commands/`     | Markdown | `iflow`         | iFlow CLI (iflow-ai)        |
 | **IBM Bob**                | `.bob/commands/`       | Markdown | N/A (IDE-based) | IBM Bob IDE                 |
 | **Trae**                   | `.trae/rules/`         | Markdown | N/A (IDE-based) | Trae IDE                    |
 | **Generic**                | User-specified via `--ai-commands-dir` | Markdown | N/A | Bring your own agent        |
@@ -85,7 +87,7 @@ This eliminates the need for special-case mappings throughout the codebase.
 - `folder`: Directory where agent-specific files are stored (relative to project root)
 - `commands_subdir`: Subdirectory name within the agent folder where command/prompt files are stored (default: `"commands"`)
  - Most agents use `"commands"` (e.g., `.claude/commands/`)
-  - Some agents use alternative names: `"agents"` (copilot), `"workflows"` (windsurf, kilocode), `"prompts"` (codex, kiro-cli), `"command"` (opencode - singular)
+  - Some agents use alternative names: `"agents"` (copilot), `"workflows"` (windsurf, kilocode), `"prompts"` (codex, kiro-cli, pi), `"command"` (opencode - singular)
  - This field enables `--ai-skills` to locate command templates correctly for skill generation
 - `install_url`: Installation documentation URL (set to `None` for IDE-based agents)
 - `requires_cli`: Whether the agent requires a CLI tool check during initialization
@@ -323,6 +325,7 @@ Require a command-line tool to be installed:
 - **SHAI**: `shai` CLI
 - **Tabnine CLI**: `tabnine` CLI
 - **Kimi Code**: `kimi` CLI
 - **Pi Coding Agent**: `pi` CLI
 ### IDE-Based Agents
@@ -336,7 +339,7 @@ Work within integrated development environments:
 ### Markdown Format
-Used by: Claude, Cursor, opencode, Windsurf, Kiro CLI, Amp, SHAI, IBM Bob, Kimi Code, Qwen
+Used by: Claude, Cursor, opencode, Windsurf, Kiro CLI, Amp, SHAI, IBM Bob, Kimi Code, Qwen, Pi
 **Standard format:**
@@ -374,6 +377,10 @@ Command content with {SCRIPT} and {{args}} placeholders.
 ## Directory Conventions
 - **CLI agents**: Usually `.<agent-name>/commands/`
 - **Common prompt-based exceptions**:
  - Codex: `.codex/prompts/`
  - Kiro CLI: `.kiro/prompts/`
  - Pi: `.pi/prompts/`
 - **IDE agents**: Follow IDE-specific patterns:
  - Copilot: `.github/agents/`
  - Cursor: `.cursor/commands/`
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -7,6 +7,93 @@ Recent changes to the Specify CLI and templates are documented here.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 ## [0.3.2] - 2026-03-19
 ### Changed
 - Add conduct extension to community catalog (#1908)
 - feat(extensions): add verify-tasks extension to community catalog (#1871)
 - feat(presets): add enable/disable toggle and update semantics (#1891)
 - feat: add iFlow CLI support (#1875)
 - feat(commands): wire before/after hook events into specify and plan templates (#1886)
 - docs(catalog): add speckit-utils to community catalog (#1896)
 - docs: Add Extensions & Presets section to README (#1898)
 - chore: update DocGuard extension to v0.9.11 (#1899)
 - Update cognitive-squad catalog entry — Triadic Model, full lifecycle (#1884)
 - feat: register spec-kit-iterate extension (#1887)
 - fix(scripts): add explicit positional binding to PowerShell create-new-feature params (#1885)
 - fix(scripts): encode residual JSON control chars as \uXXXX instead of stripping (#1872)
 - chore: update DocGuard extension to v0.9.10 (#1890)
 - Feature/spec kit add pi coding agent pullrequest (#1853)
 - feat: register spec-kit-learn extension (#1883)
 - chore: bump version to 0.3.1 (#1880)
 - docs: add greenfield Spring Boot pirate-speak preset demo to README (#1878)
 - fix(ai-skills): exclude non-speckit copilot agent markdown from skill… (#1867)
 - feat: add Trae IDE support as a new agent (#1817)
 - feat(cli): polite deep merge for settings.json and support JSONC (#1874)
 - feat(extensions,presets): add priority-based resolution ordering (#1855)
 - fix(scripts): suppress stdout from git fetch in create-new-feature.sh (#1876)
 - fix(scripts): harden bash scripts — escape, compat, and error handling (#1869)
 - Add cognitive-squad to community extension catalog (#1870)
 - docs: add Go / React brownfield walkthrough to community walkthroughs (#1868)
 - chore: update DocGuard extension to v0.9.8 (#1859)
 - Feature: add specify status command (#1837)
 - fix(extensions): show extension ID in list output (#1843)
 - feat(extensions): add Archive and Reconcile extensions to community catalog (#1844)
 - feat: Add DocGuard CDD enforcement extension to community catalog (#1838)
 - chore: bump version to 0.3.0 (#1839)
 - feat(presets): Pluggable preset system with catalog, resolver, and skills propagation (#1787)
 - fix: match 'Last updated' timestamp with or without bold markers (#1836)
 - Add specify doctor command for project health diagnostics (#1828)
 - fix: harden bash scripts against shell injection and improve robustness (#1809)
 - fix: clean up command templates (specify, analyze) (#1810)
 - fix: migrate Qwen Code CLI from TOML to Markdown format (#1589) (#1730)
 - fix(cli): deprecate explicit command support for agy (#1798) (#1808)
 - Add /selftest.extension core extension to test other extensions (#1758)
 - feat(extensions): Quality of life improvements for RFC-aligned catalog integration (#1776)
 - Add Java brownfield walkthrough to community walkthroughs (#1820)
 - chore: bump version to 0.2.1 (#1813)
 - Added February 2026 newsletter (#1812)
 - feat: add Kimi Code CLI agent support (#1790)
 - docs: fix broken links in quickstart guide (#1759) (#1797)
 - docs: add catalog cli help documentation (#1793) (#1794)
 - fix: use quiet checkout to avoid exception on git checkout (#1792)
 - feat(extensions): support .extensionignore to exclude files during install (#1781)
 - feat: add Codex support for extension command registration (#1767)
 - chore: bump version to 0.2.0 (#1786)
 - fix: sync agent list comments with actual supported agents (#1785)
 - feat(extensions): support multiple active catalogs simultaneously (#1720)
 - Pavel/add tabnine cli support (#1503)
 - Add Understanding extension to community catalog (#1778)
 - Add ralph extension to community catalog (#1780)
 - Update README with project initialization instructions (#1772)
 - feat: add review extension to community catalog (#1775)
 - Add fleet extension to community catalog (#1771)
 - Integration of Mistral vibe support into speckit (#1725)
 - fix: Remove duplicate options in specify.md (#1765)
 - fix: use global branch numbering instead of per-short-name detection (#1757)
 - Add Community Walkthroughs section to README (#1766)
 - feat(extensions): add Jira Integration to community catalog (#1764)
 - Add Azure DevOps Integration extension to community catalog (#1734)
 - Fix docs: update Antigravity link and add initialization example (#1748)
 - fix: wire after_tasks and after_implement hook events into command templates (#1702)
 - make c ignores consistent with c++ (#1747)
 - chore: bump version to 0.1.13 (#1746)
 - feat: add kiro-cli and AGENT_CONFIG consistency coverage (#1690)
 - feat: add verify extension to community catalog (#1726)
 - Add Retrospective Extension to community catalog README table (#1741)
 - fix(scripts): add empty description validation and branch checkout error handling (#1559)
 - fix: correct Copilot extension command registration (#1724)
 - fix(implement): remove Makefile from C ignore patterns (#1558)
 - Add sync extension to community catalog (#1728)
 - fix(checklist): clarify file handling behavior for append vs create (#1556)
 - fix(clarify): correct conflicting question limit from 10 to 5 (#1557)
 - chore: bump version to 0.1.12 (#1737)
 - fix: use RELEASE_PAT so tag push triggers release workflow (#1736)
 - fix: release-trigger uses release branch + PR instead of direct push to main (#1733)
 - fix: Split release process to sync pyproject.toml version with git tags (#1732)
 ## [0.3.1] - 2026-03-17
 ### Changed
--- a/README.md
+++ b/README.md
@@ -25,6 +25,7 @@
 - [🚶 Community Walkthroughs](#-community-walkthroughs)
 - [🤖 Supported AI Agents](#-supported-ai-agents)
 - [🔧 Specify CLI Reference](#-specify-cli-reference)
 - [🧩 Making Spec Kit Your Own: Extensions & Presets](#-making-spec-kit-your-own-extensions--presets)
 - [📚 Core Philosophy](#-core-philosophy)
 - [🌟 Development Phases](#-development-phases)
 - [🎯 Experimental Goals](#-experimental-goals)
@@ -180,12 +181,14 @@ See Spec-Driven Development in action across different scenarios with these comm
 | [Jules](https://jules.google.com/)                                                   | ✅      |                                                                                                                                           |
 | [Kilo Code](https://github.com/Kilo-Org/kilocode)                                    | ✅      |                                                                                                                                           |
 | [opencode](https://opencode.ai/)                                                     | ✅      |                                                                                                                                           |
 | [Pi Coding Agent](https://pi.dev)                                                    | ✅      | Pi doesn't have MCP support out of the box, so `taskstoissues` won't work as intended. MCP support can be added via [extensions](https://github.com/badlogic/pi-mono/tree/main/packages/coding-agent#extensions) |
 | [Qwen Code](https://github.com/QwenLM/qwen-code)                                     | ✅      |                                                                                                                                           |
 | [Roo Code](https://roocode.com/)                                                     | ✅      |                                                                                                                                           |
 | [SHAI (OVHcloud)](https://github.com/ovh/shai)                                       | ✅      |                                                                                                                                           |
 | [Tabnine CLI](https://docs.tabnine.com/main/getting-started/tabnine-cli)             | ✅      |                                                                                                                                           |
 | [Mistral Vibe](https://github.com/mistralai/mistral-vibe)                            | ✅      |                                                                                                                                           |
 | [Kimi Code](https://code.kimi.com/)                                                  | ✅      |                                                                                                                                           |
 | [iFlow CLI](https://docs.iflow.cn/en/cli/quickstart)                                 | ✅      |                                                                                                                                           |
 | [Windsurf](https://windsurf.com/)                                                    | ✅      |                                                                                                                                           |
 | [Antigravity (agy)](https://antigravity.google/)                                     | ✅      | Requires `--ai-skills` |
 | [Trae](https://www.trae.ai/)                                                         | ✅      |                                                                                                                                           |
@@ -197,17 +200,17 @@ The `specify` command supports the following options:
 ### Commands
-| Command | Description                                                                                                                                             |
+| Command | Description                                                                                                                                                                                                                  |
-| ------- | ------------------------------------------------------------------------------------------------------------------------------------------------------- |
+| ------- | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
-| `init`  | Initialize a new Specify project from the latest template                                                                                               |
+| `init`  | Initialize a new Specify project from the latest template                                                                                                                                                                    |
-| `check` | Check for installed tools (`git`, `claude`, `gemini`, `code`/`code-insiders`, `cursor-agent`, `windsurf`, `qwen`, `opencode`, `codex`, `kiro-cli`, `shai`, `qodercli`, `vibe`, `kimi`) |
+| `check` | Check for installed tools: `git` plus all CLI-based agents configured in `AGENT_CONFIG` (for example: `claude`, `gemini`, `code`/`code-insiders`, `cursor-agent`, `windsurf`, `qwen`, `opencode`, `codex`, `kiro-cli`, `shai`, `qodercli`, `vibe`, `kimi`, `iflow`, `pi`, etc.) |
 ### `specify init` Arguments & Options
-| Argument/Option        | Type     | Description                                                                                                                                                                                  |
+| Argument/Option        | Type     | Description                                                                                                                                                                                                                                                                         |
-| ---------------------- | -------- | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
+| ---------------------- | -------- | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
-| `<project-name>`       | Argument | Name for your new project directory (optional if using `--here`, or use `.` for current directory)                                                                                           |
+| `<project-name>`       | Argument | Name for your new project directory (optional if using `--here`, or use `.` for current directory)                                                                                                                                                                                  |
-| `--ai`                 | Option   | AI assistant to use: `claude`, `gemini`, `copilot`, `cursor-agent`, `qwen`, `opencode`, `codex`, `windsurf`, `kilocode`, `auggie`, `roo`, `codebuddy`, `amp`, `shai`, `kiro-cli` (`kiro` alias), `agy`, `bob`, `qodercli`, `vibe`, `kimi`, or `generic` (requires `--ai-commands-dir`) |
+| `--ai`                 | Option   | AI assistant to use (see `AGENT_CONFIG` for the full, up-to-date list). Common options include: `claude`, `gemini`, `copilot`, `cursor-agent`, `qwen`, `opencode`, `codex`, `windsurf`, `kilocode`, `auggie`, `roo`, `codebuddy`, `amp`, `shai`, `kiro-cli` (`kiro` alias), `agy`, `bob`, `qodercli`, `vibe`, `kimi`, `iflow`, `pi`, or `generic` (requires `--ai-commands-dir`) |
 | `--ai-commands-dir`    | Option   | Directory for agent command files (required with `--ai generic`, e.g. `.myagent/commands/`)                                                                                                  |
 | `--script`             | Option   | Script variant to use: `sh` (bash/zsh) or `ps` (PowerShell)                                                                                                                                  |
 | `--ignore-agent-tools` | Flag     | Skip checks for AI agent tools like Claude Code                                                                                                                                              |
@@ -252,6 +255,9 @@ specify init my-project --ai vibe
 # Initialize with IBM Bob support
 specify init my-project --ai bob
 # Initialize with Pi Coding Agent support
 specify init my-project --ai pi
 # Initialize with Antigravity support
 specify init my-project --ai agy --ai-skills
@@ -322,6 +328,68 @@ Additional commands for enhanced quality and validation:
 | ----------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
 | `SPECIFY_FEATURE` | Override feature detection for non-Git repositories. Set to the feature directory name (e.g., `001-photo-albums`) to work on a specific feature when not using Git branches.<br/>\*\*Must be set in the context of the agent you're working with prior to using `/speckit.plan` or follow-up commands. |
 ## 🧩 Making Spec Kit Your Own: Extensions & Presets
 Spec Kit can be tailored to your needs through two complementary systems — **extensions** and **presets** — plus project-local overrides for one-off adjustments:
 ```mermaid
 block-beta
    columns 1
    overrides["⬆ Highest priority\nProject-Local Overrides\n.specify/templates/overrides/"]
    presets["Presets — Customize core & extensions\n.specify/presets/<preset-id>/templates/"]
    extensions["Extensions — Add new capabilities\n.specify/extensions/<ext-id>/templates/"]
    core["Spec Kit Core — Built-in SDD commands & templates\n.specify/templates/\n⬇ Lowest priority"]
    style overrides fill:transparent,stroke:#999
    style presets fill:transparent,stroke:#4a9eda
    style extensions fill:transparent,stroke:#4a9e4a
    style core fill:transparent,stroke:#e6a817
 ```
 **Templates** are resolved at **runtime** — Spec Kit walks the stack top-down and uses the first match. Project-local overrides (`.specify/templates/overrides/`) let you make one-off adjustments for a single project without creating a full preset. **Commands** are applied at **install time** — when you run `specify extension add` or `specify preset add`, command files are written into agent directories (e.g., `.claude/commands/`). If multiple presets or extensions provide the same command, the highest-priority version wins. On removal, the next-highest-priority version is restored automatically. If no overrides or customizations exist, Spec Kit uses its core defaults.
 ### Extensions — Add New Capabilities
 Use **extensions** when you need functionality that goes beyond Spec Kit's core. Extensions introduce new commands and templates — for example, adding domain-specific workflows that are not covered by the built-in SDD commands, integrating with external tools, or adding entirely new development phases. They expand *what Spec Kit can do*.
 ```bash
 # Search available extensions
 specify extension search
 # Install an extension
 specify extension add <extension-name>
 ```
 For example, extensions could add Jira integration, post-implementation code review, V-Model test traceability, or project health diagnostics.
 See the [Extensions README](./extensions/README.md) for the full guide, the complete community catalog, and how to build and publish your own.
 ### Presets — Customize Existing Workflows
 Use **presets** when you want to change *how* Spec Kit works without adding new capabilities. Presets override the templates and commands that ship with the core *and* with installed extensions — for example, enforcing a compliance-oriented spec format, using domain-specific terminology, or applying organizational standards to plans and tasks. They customize the artifacts and instructions that Spec Kit and its extensions produce.
 ```bash
 # Search available presets
 specify preset search
 # Install a preset
 specify preset add <preset-name>
 ```
 For example, presets could restructure spec templates to require regulatory traceability, adapt the workflow to fit the methodology you use (e.g., Agile, Kanban, Waterfall, jobs-to-be-done, or domain-driven design), add mandatory security review gates to plans, enforce test-first task ordering, or localize the entire workflow to a different language. The [pirate-speak demo](https://github.com/mnriem/spec-kit-pirate-speak-preset-demo) shows just how deep the customization can go. Multiple presets can be stacked with priority ordering.
 See the [Presets README](./presets/README.md) for the full guide, including resolution order, priority, and how to create your own.
 ### When to Use Which
 | Goal | Use |
 | --- | --- |
 | Add a brand-new command or workflow | Extension |
 | Customize the format of specs, plans, or tasks | Preset |
 | Integrate an external tool or service | Extension |
 | Enforce organizational or regulatory standards | Preset |
 | Ship reusable domain-specific templates | Either — presets for template overrides, extensions for templates bundled with new commands |
 ## 📚 Core Philosophy
 Spec-Driven Development is a structured process that emphasizes:
@@ -429,7 +497,7 @@ specify init . --force --ai claude
 specify init --here --force --ai claude
 ```
-The CLI will check if you have Claude Code, Gemini CLI, Cursor CLI, Qwen CLI, opencode, Codex CLI, Qoder CLI, Tabnine CLI, Kiro CLI, or Mistral Vibe installed. If you do not, or you prefer to get the templates without checking for the right tools, use `--ignore-agent-tools` with your command:
+The CLI will check if you have Claude Code, Gemini CLI, Cursor CLI, Qwen CLI, opencode, Codex CLI, Qoder CLI, Tabnine CLI, Kiro CLI, Pi, or Mistral Vibe installed. If you do not, or you prefer to get the templates without checking for the right tools, use `--ignore-agent-tools` with your command:
 ```bash
 specify init <project_name> --ai claude --ignore-agent-tools
--- a/docs/installation.md
+++ b/docs/installation.md
@@ -3,7 +3,7 @@
 ## Prerequisites
 - **Linux/macOS** (or Windows; PowerShell scripts now supported without WSL)
- AI coding agent: [Claude Code](https://www.anthropic.com/claude-code), [GitHub Copilot](https://code.visualstudio.com/), [Codebuddy CLI](https://www.codebuddy.ai/cli) or [Gemini CLI](https://github.com/google-gemini/gemini-cli)
+- AI coding agent: [Claude Code](https://www.anthropic.com/claude-code), [GitHub Copilot](https://code.visualstudio.com/), [Codebuddy CLI](https://www.codebuddy.ai/cli), [Gemini CLI](https://github.com/google-gemini/gemini-cli), or [Pi Coding Agent](https://pi.dev)
 - [uv](https://docs.astral.sh/uv/) for package management
 - [Python 3.11+](https://www.python.org/downloads/)
 - [Git](https://git-scm.com/downloads)
@@ -35,6 +35,7 @@ uvx --from git+https://github.com/github/spec-kit.git specify init <project_name
 uvx --from git+https://github.com/github/spec-kit.git specify init <project_name> --ai gemini
 uvx --from git+https://github.com/github/spec-kit.git specify init <project_name> --ai copilot
 uvx --from git+https://github.com/github/spec-kit.git specify init <project_name> --ai codebuddy
 uvx --from git+https://github.com/github/spec-kit.git specify init <project_name> --ai pi
 ```
 ### Specify Script Type (Shell vs PowerShell)
--- a/docs/upgrade.md
+++ b/docs/upgrade.md
@@ -289,8 +289,9 @@ This tells Spec Kit which feature directory to use when creating specs, plans, a
   ```bash
   ls -la .claude/commands/      # Claude Code
-   ls -la .gemini/commands/       # Gemini
+   ls -la .gemini/commands/      # Gemini
-   ls -la .cursor/commands/       # Cursor
+   ls -la .cursor/commands/      # Cursor
   ls -la .pi/prompts/           # Pi Coding Agent
   ```
 3. **Check agent-specific setup:**
@@ -398,7 +399,7 @@ The `specify` CLI tool is used for:
 - **Upgrades:** `specify init --here --force` to update templates and commands
 - **Diagnostics:** `specify check` to verify tool installation
-Once you've run `specify init`, the slash commands (like `/speckit.specify`, `/speckit.plan`, etc.) are **permanently installed** in your project's agent folder (`.claude/`, `.github/prompts/`, etc.). Your AI assistant reads these command files directly—no need to run `specify` again.
+Once you've run `specify init`, the slash commands (like `/speckit.specify`, `/speckit.plan`, etc.) are **permanently installed** in your project's agent folder (`.claude/`, `.github/prompts/`, `.pi/prompts/`, etc.). Your AI assistant reads these command files directly—no need to run `specify` again.
 **If your agent isn't recognizing slash commands:**
@@ -410,6 +411,9 @@ Once you've run `specify init`, the slash commands (like `/speckit.specify`, `/s
   # For Claude
   ls -la .claude/commands/
   # For Pi
   ls -la .pi/prompts/
   ```
 2. **Restart your IDE/editor completely** (not just reload window)
--- a/extensions/EXTENSION-API-REFERENCE.md
+++ b/extensions/EXTENSION-API-REFERENCE.md
@@ -53,7 +53,7 @@ provides:
      required: boolean  # Default: false
 hooks:                   # Optional, event hooks
-  event_name:            # e.g., "after_tasks", "after_implement"
+  event_name:            # e.g., "after_specify", "after_plan", "after_tasks", "after_implement"
    command: string      # Command to execute
    optional: boolean    # Default: true
    prompt: string       # Prompt text for optional hooks
@@ -108,7 +108,7 @@ defaults:                # Optional, default configuration values
 #### `hooks`
 - **Type**: object
- **Keys**: Event names (e.g., `after_tasks`, `after_implement`, `before_commit`)
+- **Keys**: Event names (e.g., `after_specify`, `after_plan`, `after_tasks`, `after_implement`, `before_commit`)
 - **Description**: Hooks that execute at lifecycle events
 - **Events**: Defined by core spec-kit commands
@@ -551,10 +551,16 @@ hooks:
 Standard events (defined by core):
 - `before_specify` - Before specification generation
 - `after_specify` - After specification generation
 - `before_plan` - Before implementation planning
 - `after_plan` - After implementation planning
 - `before_tasks` - Before task generation
 - `after_tasks` - After task generation
 - `before_implement` - Before implementation
 - `after_implement` - After implementation
- `before_commit` - Before git commit
+- `before_commit` - Before git commit *(planned - not yet wired into core templates)*
- `after_commit` - After git commit
+- `after_commit` - After git commit *(planned - not yet wired into core templates)*
 ### Hook Configuration
--- a/extensions/EXTENSION-USER-GUIDE.md
+++ b/extensions/EXTENSION-USER-GUIDE.md
@@ -387,6 +387,9 @@ settings:
  auto_execute_hooks: true
 # Hook configuration
 # Available events: before_specify, after_specify, before_plan, after_plan,
 #                   before_tasks, after_tasks, before_implement, after_implement
 # Planned (not yet wired into core templates): before_commit, after_commit
 hooks:
  after_tasks:
    - extension: jira
--- a/extensions/README.md
+++ b/extensions/README.md
@@ -75,20 +75,25 @@ The following community-contributed extensions are available in [`catalog.commun
 | Archive Extension | Archive merged features into main project memory. | [spec-kit-archive](https://github.com/stn1slv/spec-kit-archive) |
 | Azure DevOps Integration | Sync user stories and tasks to Azure DevOps work items using OAuth authentication | [spec-kit-azure-devops](https://github.com/pragya247/spec-kit-azure-devops) |
 | Cleanup Extension | Post-implementation quality gate that reviews changes, fixes small issues (scout rule), creates tasks for medium issues, and generates analysis for large issues | [spec-kit-cleanup](https://github.com/dsrednicki/spec-kit-cleanup) |
-| Cognitive Squad | 19-function cognitive agent squad for autonomous pre-code analysis — 7 core agents, 7 specialists, 4 learning functions with feedback loop | [cognitive-squad](https://github.com/Testimonial/cognitive-squad) |
+| Cognitive Squad | Multi-agent cognitive system with Triadic Model: understanding, internalization, application — with quality gates, backpropagation verification, and self-healing | [cognitive-squad](https://github.com/Testimonial/cognitive-squad) |
-| DocGuard — CDD Enforcement | Canonical-Driven Development enforcement. Validates, scores, and traces project documentation with automated checks, AI-driven workflows, and spec-kit hooks. Zero dependencies. | [spec-kit-docguard](https://github.com/raccioly/docguard) |
+| Conduct Extension | Orchestrates spec-kit phases via sub-agent delegation to reduce context pollution. | [spec-kit-conduct-ext](https://github.com/twbrandon7/spec-kit-conduct-ext) |
 | DocGuard — CDD Enforcement | Canonical-Driven Development enforcement. Validates, scores, and traces project documentation with automated checks, AI-driven workflows, and spec-kit hooks. Zero NPM runtime dependencies. | [spec-kit-docguard](https://github.com/raccioly/docguard) |
 | Fleet Orchestrator | Orchestrate a full feature lifecycle with human-in-the-loop gates across all SpecKit phases | [spec-kit-fleet](https://github.com/sharathsatish/spec-kit-fleet) |
 | Iterate | Iterate on spec documents with a two-phase define-and-apply workflow — refine specs mid-implementation and go straight back to building | [spec-kit-iterate](https://github.com/imviancagrace/spec-kit-iterate) |
 | Jira Integration | Create Jira Epics, Stories, and Issues from spec-kit specifications and task breakdowns with configurable hierarchy and custom field support | [spec-kit-jira](https://github.com/mbachorik/spec-kit-jira) |
 | Learning Extension | Generate educational guides from implementations and enhance clarifications with mentoring context | [spec-kit-learn](https://github.com/imviancagrace/spec-kit-learn) |
 | Project Health Check | Diagnose a Spec Kit project and report health issues across structure, agents, features, scripts, extensions, and git | [spec-kit-doctor](https://github.com/KhawarHabibKhan/spec-kit-doctor) |
 | Project Status | Show current SDD workflow progress — active feature, artifact status, task completion, workflow phase, and extensions summary | [spec-kit-status](https://github.com/KhawarHabibKhan/spec-kit-status) |
 | Ralph Loop | Autonomous implementation loop using AI agent CLI | [spec-kit-ralph](https://github.com/Rubiss/spec-kit-ralph) |
 | Reconcile Extension | Reconcile implementation drift by surgically updating feature artifacts. | [spec-kit-reconcile](https://github.com/stn1slv/spec-kit-reconcile) |
 | Retrospective Extension | Post-implementation retrospective with spec adherence scoring, drift analysis, and human-gated spec updates | [spec-kit-retrospective](https://github.com/emi-dm/spec-kit-retrospective) |
 | Review Extension | Post-implementation comprehensive code review with specialized agents for code quality, comments, tests, error handling, type design, and simplification | [spec-kit-review](https://github.com/ismaelJimenez/spec-kit-review) |
 | SDD Utilities | Resume interrupted workflows, validate project health, and verify spec-to-task traceability | [speckit-utils](https://github.com/mvanhorn/speckit-utils) |
 | Spec Sync | Detect and resolve drift between specs and implementation. AI-assisted resolution with human approval | [spec-kit-sync](https://github.com/bgervin/spec-kit-sync) |
 | Understanding | Automated requirements quality analysis — 31 deterministic metrics against IEEE/ISO standards with experimental energy-based ambiguity detection | [understanding](https://github.com/Testimonial/understanding) |
 | V-Model Extension Pack | Enforces V-Model paired generation of development specs and test specs with full traceability | [spec-kit-v-model](https://github.com/leocamello/spec-kit-v-model) |
 | Verify Extension | Post-implementation quality gate that validates implemented code against specification artifacts | [spec-kit-verify](https://github.com/ismaelJimenez/spec-kit-verify) |
 | Verify Tasks Extension | Detect phantom completions: tasks marked [X] in tasks.md with no real implementation | [spec-kit-verify-tasks](https://github.com/datastone-inc/spec-kit-verify-tasks) |
 ## Adding Your Extension
--- a/extensions/catalog.community.json
+++ b/extensions/catalog.community.json
@@ -1,6 +1,6 @@
 {
  "schema_version": "1.0",
-  "updated_at": "2026-03-16T00:00:00Z",
+  "updated_at": "2026-03-19T12:08:20Z",
  "catalog_url": "https://raw.githubusercontent.com/github/spec-kit/main/extensions/catalog.community.json",
  "extensions": {
    "archive": {
@@ -108,7 +108,7 @@
    "cognitive-squad": {
      "name": "Cognitive Squad",
      "id": "cognitive-squad",
-      "description": "19-function cognitive agent squad for autonomous pre-code analysis — 7 core agents, 7 specialists, 4 learning functions with feedback loop",
+      "description": "Multi-agent cognitive system with Triadic Model: understanding, internalization, application — with quality gates, backpropagation verification, and self-healing",
      "author": "Testimonial",
      "version": "0.1.0",
      "download_url": "https://github.com/Testimonial/cognitive-squad/archive/refs/tags/v0.1.0.zip",
@@ -133,29 +133,59 @@
        ]
      },
      "provides": {
-        "commands": 7,
+        "commands": 10,
        "hooks": 1
      },
      "tags": [
        "ai-agents",
        "cognitive",
-        "pre-code",
+        "full-lifecycle",
-        "analysis",
+        "verification",
        "multi-agent"
      ],
      "verified": false,
      "downloads": 0,
      "stars": 0,
      "created_at": "2026-03-16T00:00:00Z",
-      "updated_at": "2026-03-16T00:00:00Z"
+      "updated_at": "2026-03-18T00:00:00Z"
    },
    "conduct": {
      "name": "Conduct Extension",
      "id": "conduct",
      "description": "Executes a single spec-kit phase via sub-agent delegation to reduce context pollution.",
      "author": "twbrandon7",
      "version": "1.0.0",
      "download_url": "https://github.com/twbrandon7/spec-kit-conduct-ext/archive/refs/tags/v1.0.0.zip",
      "repository": "https://github.com/twbrandon7/spec-kit-conduct-ext",
      "homepage": "https://github.com/twbrandon7/spec-kit-conduct-ext",
      "documentation": "https://github.com/twbrandon7/spec-kit-conduct-ext/blob/main/README.md",
      "changelog": "https://github.com/twbrandon7/spec-kit-conduct-ext/blob/main/CHANGELOG.md",
      "license": "MIT",
      "requires": {
        "speckit_version": ">=0.3.1"
      },
      "provides": {
        "commands": 1,
        "hooks": 0
      },
      "tags": [
        "conduct",
        "workflow",
        "automation"
      ],
      "verified": false,
      "downloads": 0,
      "stars": 0,
      "created_at": "2026-03-19T12:08:20Z",
      "updated_at": "2026-03-19T12:08:20Z"
    },
    "docguard": {
      "name": "DocGuard \u2014 CDD Enforcement",
      "id": "docguard",
-      "description": "Canonical-Driven Development enforcement. Validates, scores, and traces project documentation with automated checks, AI-driven workflows, and spec-kit hooks. Zero dependencies.",
+      "description": "Canonical-Driven Development enforcement. Validates, scores, and traces project documentation with automated checks, AI-driven workflows, and spec-kit hooks. Zero NPM runtime dependencies.",
      "author": "raccioly",
-      "version": "0.9.8",
+      "version": "0.9.11",
-      "download_url": "https://github.com/raccioly/docguard/releases/download/v0.9.8/spec-kit-docguard-v0.9.8.zip",
+      "download_url": "https://github.com/raccioly/docguard/releases/download/v0.9.11/spec-kit-docguard-v0.9.11.zip",
      "repository": "https://github.com/raccioly/docguard",
      "homepage": "https://www.npmjs.com/package/docguard-cli",
      "documentation": "https://github.com/raccioly/docguard/blob/main/extensions/spec-kit-docguard/README.md",
@@ -189,7 +219,7 @@
      "downloads": 0,
      "stars": 0,
      "created_at": "2026-03-13T00:00:00Z",
-      "updated_at": "2026-03-15T20:00:00Z"
+      "updated_at": "2026-03-18T18:53:31Z"
    },
    "doctor": {
      "name": "Project Health Check",
@@ -253,6 +283,36 @@
      "created_at": "2026-03-06T00:00:00Z",
      "updated_at": "2026-03-06T00:00:00Z"
    },
    "iterate": {
      "name": "Iterate",
      "id": "iterate",
      "description": "Iterate on spec documents with a two-phase define-and-apply workflow — refine specs mid-implementation and go straight back to building",
      "author": "Vianca Martinez",
      "version": "2.0.0",
      "download_url": "https://github.com/imviancagrace/spec-kit-iterate/archive/refs/tags/v2.0.0.zip",
      "repository": "https://github.com/imviancagrace/spec-kit-iterate",
      "homepage": "https://github.com/imviancagrace/spec-kit-iterate",
      "documentation": "https://github.com/imviancagrace/spec-kit-iterate/blob/main/README.md",
      "changelog": "https://github.com/imviancagrace/spec-kit-iterate/blob/main/CHANGELOG.md",
      "license": "MIT",
      "requires": {
        "speckit_version": ">=0.1.0"
      },
      "provides": {
        "commands": 2,
        "hooks": 0
      },
      "tags": [
        "iteration",
        "change-management",
        "spec-maintenance"
      ],
      "verified": false,
      "downloads": 0,
      "stars": 0,
      "created_at": "2026-03-17T00:00:00Z",
      "updated_at": "2026-03-17T00:00:00Z"
    },
    "jira": {
      "name": "Jira Integration",
      "id": "jira",
@@ -422,6 +482,38 @@
      "created_at": "2026-03-06T00:00:00Z",
      "updated_at": "2026-03-06T00:00:00Z"
    },
    "speckit-utils": {
      "name": "SDD Utilities",
      "id": "speckit-utils",
      "description": "Resume interrupted workflows, validate project health, and verify spec-to-task traceability.",
      "author": "mvanhorn",
      "version": "1.0.0",
      "download_url": "https://github.com/mvanhorn/speckit-utils/archive/refs/tags/v1.0.0.zip",
      "repository": "https://github.com/mvanhorn/speckit-utils",
      "homepage": "https://github.com/mvanhorn/speckit-utils",
      "documentation": "https://github.com/mvanhorn/speckit-utils/blob/main/README.md",
      "changelog": "https://github.com/mvanhorn/speckit-utils/blob/main/CHANGELOG.md",
      "license": "MIT",
      "requires": {
        "speckit_version": ">=0.1.0"
      },
      "provides": {
        "commands": 3,
        "hooks": 2
      },
      "tags": [
        "resume",
        "doctor",
        "validate",
        "workflow",
        "health-check"
      ],
      "verified": false,
      "downloads": 0,
      "stars": 0,
      "created_at": "2026-03-18T00:00:00Z",
      "updated_at": "2026-03-18T00:00:00Z"
    },
    "sync": {
      "name": "Spec Sync",
      "id": "sync",
@@ -559,6 +651,37 @@
      "created_at": "2026-02-20T00:00:00Z",
      "updated_at": "2026-02-22T00:00:00Z"
    },
    "learn": {
      "name": "Learning Extension",
      "id": "learn",
      "description": "Generate educational guides from implementations and enhance clarifications with mentoring context.",
      "author": "Vianca Martinez",
      "version": "1.0.0",
      "download_url": "https://github.com/imviancagrace/spec-kit-learn/archive/refs/tags/v1.0.0.zip",
      "repository": "https://github.com/imviancagrace/spec-kit-learn",
      "homepage": "https://github.com/imviancagrace/spec-kit-learn",
      "documentation": "https://github.com/imviancagrace/spec-kit-learn/blob/main/README.md",
      "changelog": "https://github.com/imviancagrace/spec-kit-learn/blob/main/CHANGELOG.md",
      "license": "MIT",
      "requires": {
        "speckit_version": ">=0.1.0"
      },
      "provides": {
        "commands": 2,
        "hooks": 1
      },
      "tags": [
        "learning",
        "education",
        "mentoring",
        "knowledge-transfer"
      ],
      "verified": false,
      "downloads": 0,
      "stars": 0,
      "created_at": "2026-03-17T00:00:00Z",
      "updated_at": "2026-03-17T00:00:00Z"
    },
    "verify": {
      "name": "Verify Extension",
      "id": "verify",
@@ -590,6 +713,37 @@
      "stars": 0,
      "created_at": "2026-03-03T00:00:00Z",
      "updated_at": "2026-03-03T00:00:00Z"
    },
    "verify-tasks": {
      "name": "Verify Tasks Extension",
      "id": "verify-tasks",
      "description": "Detect phantom completions: tasks marked [X] in tasks.md with no real implementation.",
      "author": "Dave Sharpe",
      "version": "1.0.0",
      "download_url": "https://github.com/datastone-inc/spec-kit-verify-tasks/archive/refs/tags/v1.0.0.zip",
      "repository": "https://github.com/datastone-inc/spec-kit-verify-tasks",
      "homepage": "https://github.com/datastone-inc/spec-kit-verify-tasks",
      "documentation": "https://github.com/datastone-inc/spec-kit-verify-tasks/blob/main/README.md",
      "changelog": "https://github.com/datastone-inc/spec-kit-verify-tasks/blob/main/CHANGELOG.md",
      "license": "MIT",
      "requires": {
        "speckit_version": ">=0.1.0"
      },
      "provides": {
        "commands": 1,
        "hooks": 1
      },
      "tags": [
        "verification",
        "quality",
        "phantom-completion",
        "tasks"
      ],
      "verified": false,
      "downloads": 0,
      "stars": 0,
      "created_at": "2026-03-16T00:00:00Z",
      "updated_at": "2026-03-16T00:00:00Z"
    }
  }
 }
--- a/presets/README.md
+++ b/presets/README.md
@@ -13,13 +13,15 @@ When Spec Kit needs a template (e.g. `spec-template`), it walks a resolution sta
 If no preset is installed, core templates are used — exactly the same behavior as before presets existed.
 Template resolution happens **at runtime** — although preset files are copied into `.specify/presets/<id>/` during installation, Spec Kit walks the resolution stack on every template lookup rather than merging templates into a single location.
 For detailed resolution and command registration flows, see [ARCHITECTURE.md](ARCHITECTURE.md).
 ## Command Overrides
 Presets can also override the commands that guide the SDD workflow. Templates define *what* gets produced (specs, plans, constitutions); commands define *how* the LLM produces them (the step-by-step instructions).
-When a preset includes `type: "command"` entries, the commands are automatically registered into all detected agent directories (`.claude/commands/`, `.gemini/commands/`, etc.) in the correct format (Markdown or TOML with appropriate argument placeholders). When the preset is removed, the registered commands are cleaned up.
+Unlike templates, command overrides are applied **at install time**. When a preset includes `type: "command"` entries, the commands are registered into all detected agent directories (`.claude/commands/`, `.gemini/commands/`, etc.) in the correct format (Markdown or TOML with appropriate argument placeholders). When the preset is removed, the registered commands are cleaned up.
 ## Quick Start
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "specify-cli"
-version = "0.3.1"
+version = "0.3.2"
 description = "Specify CLI, part of GitHub Spec Kit. A tool to bootstrap your projects for Spec-Driven Development (SDD)."
 requires-python = ">=3.11"
 dependencies = [
--- a/scripts/bash/common.sh
+++ b/scripts/bash/common.sh
@@ -171,9 +171,21 @@ json_escape() {
    s="${s//$'\r'/\\r}"
    s="${s//$'\b'/\\b}"
    s="${s//$'\f'/\\f}"
-    # Strip remaining control characters (U+0000–U+001F) not individually escaped above
+    # Escape any remaining U+0001-U+001F control characters as \uXXXX.
-    s=$(printf '%s' "$s" | tr -d '\000-\007\013\016-\037')
+    # (U+0000/NUL cannot appear in bash strings and is excluded.)
-    printf '%s' "$s"
+    # LC_ALL=C ensures ${#s} counts bytes and ${s:$i:1} yields single bytes,
    # so multi-byte UTF-8 sequences (first byte >= 0xC0) pass through intact.
    local LC_ALL=C
    local i char code
    for (( i=0; i<${#s}; i++ )); do
        char="${s:$i:1}"
        printf -v code '%d' "'$char" 2>/dev/null || code=256
        if (( code >= 1 && code <= 31 )); then
            printf '\\u%04x' "$code"
        else
            printf '%s' "$char"
        fi
    done
 }
 check_file() { [[ -f "$1" ]] && echo "  ✓ $2" || echo "  ✗ $2"; }
--- a/scripts/bash/update-agent-context.sh
+++ b/scripts/bash/update-agent-context.sh
@@ -30,12 +30,12 @@
 #
 # 5. Multi-Agent Support
 #    - Handles agent-specific file paths and naming conventions
-#    - Supports: Claude, Gemini, Copilot, Cursor, Qwen, opencode, Codex, Windsurf, Kilo Code, Auggie CLI, Roo Code, CodeBuddy CLI, Qoder CLI, Amp, SHAI, Tabnine CLI, Kiro CLI, Mistral Vibe, Kimi Code, Antigravity or Generic
+#    - Supports: Claude, Gemini, Copilot, Cursor, Qwen, opencode, Codex, Windsurf, Kilo Code, Auggie CLI, Roo Code, CodeBuddy CLI, Qoder CLI, Amp, SHAI, Tabnine CLI, Kiro CLI, Mistral Vibe, Kimi Code, Pi Coding Agent, iFlow CLI, Antigravity or Generic
 #    - Can update single agents or all existing agent files
 #    - Creates default Claude file if no agent files exist
 #
 # Usage: ./update-agent-context.sh [agent_type]
-# Agent types: claude|gemini|copilot|cursor-agent|qwen|opencode|codex|windsurf|kilocode|auggie|roo|codebuddy|amp|shai|tabnine|kiro-cli|agy|bob|vibe|qodercli|kimi|trae|generic
+# Agent types: claude|gemini|copilot|cursor-agent|qwen|opencode|codex|windsurf|kilocode|auggie|roo|codebuddy|amp|shai|tabnine|kiro-cli|agy|bob|vibe|qodercli|kimi|trae|pi|iflow|generic
 # Leave empty to update all existing agent files
 set -e
@@ -73,7 +73,7 @@ AUGGIE_FILE="$REPO_ROOT/.augment/rules/specify-rules.md"
 ROO_FILE="$REPO_ROOT/.roo/rules/specify-rules.md"
 CODEBUDDY_FILE="$REPO_ROOT/CODEBUDDY.md"
 QODER_FILE="$REPO_ROOT/QODER.md"
-# AMP, Kiro CLI, and IBM Bob all share AGENTS.md — use AGENTS_FILE to avoid
+# Amp, Kiro CLI, IBM Bob, and Pi all share AGENTS.md — use AGENTS_FILE to avoid
 # updating the same file multiple times.
 AMP_FILE="$AGENTS_FILE"
 SHAI_FILE="$REPO_ROOT/SHAI.md"
@@ -84,6 +84,7 @@ BOB_FILE="$AGENTS_FILE"
 VIBE_FILE="$REPO_ROOT/.vibe/agents/specify-agents.md"
 KIMI_FILE="$REPO_ROOT/KIMI.md"
 TRAE_FILE="$REPO_ROOT/.trae/rules/AGENTS.md"
 IFLOW_FILE="$REPO_ROOT/IFLOW.md"
 # Template file
 TEMPLATE_FILE="$REPO_ROOT/.specify/templates/agent-file-template.md"
@@ -679,12 +680,18 @@ update_specific_agent() {
        trae)
            update_agent_file "$TRAE_FILE" "Trae" || return 1
            ;;
        pi)
            update_agent_file "$AGENTS_FILE" "Pi Coding Agent" || return 1
            ;;
        iflow)
            update_agent_file "$IFLOW_FILE" "iFlow CLI" || return 1
            ;;
        generic)
            log_info "Generic agent: no predefined context file. Use the agent-specific update script for your agent."
            ;;
        *)
            log_error "Unknown agent type '$agent_type'"
-            log_error "Expected: claude|gemini|copilot|cursor-agent|qwen|opencode|codex|windsurf|kilocode|auggie|roo|codebuddy|amp|shai|tabnine|kiro-cli|agy|bob|vibe|qodercli|kimi|trae|generic"
+            log_error "Expected: claude|gemini|copilot|cursor-agent|qwen|opencode|codex|windsurf|kilocode|auggie|roo|codebuddy|amp|shai|tabnine|kiro-cli|agy|bob|vibe|qodercli|kimi|trae|pi|iflow|generic"
            exit 1
            ;;
    esac
@@ -744,6 +751,7 @@ update_all_existing_agents() {
    _update_if_new "$VIBE_FILE" "Mistral Vibe"             || _all_ok=false
    _update_if_new "$KIMI_FILE" "Kimi Code"                || _all_ok=false
    _update_if_new "$TRAE_FILE" "Trae"                     || _all_ok=false
    _update_if_new "$IFLOW_FILE" "iFlow CLI"               || _all_ok=false
    # If no agent files exist, create a default Claude file
    if [[ "$_found_agent" == false ]]; then
@@ -770,7 +778,7 @@ print_summary() {
    fi
    echo
-    log_info "Usage: $0 [claude|gemini|copilot|cursor-agent|qwen|opencode|codex|windsurf|kilocode|auggie|roo|codebuddy|amp|shai|tabnine|kiro-cli|agy|bob|vibe|qodercli|kimi|trae|generic]"
+    log_info "Usage: $0 [claude|gemini|copilot|cursor-agent|qwen|opencode|codex|windsurf|kilocode|auggie|roo|codebuddy|amp|shai|tabnine|kiro-cli|agy|bob|vibe|qodercli|kimi|trae|pi|iflow|generic]"
 }
 #==============================================================================
--- a/scripts/powershell/create-new-feature.ps1
+++ b/scripts/powershell/create-new-feature.ps1
@@ -4,9 +4,10 @@
 param(
    [switch]$Json,
    [string]$ShortName,
    [Parameter()]
    [int]$Number = 0,
    [switch]$Help,
-    [Parameter(ValueFromRemainingArguments = $true)]
+    [Parameter(Position = 0, ValueFromRemainingArguments = $true)]
    [string[]]$FeatureDescription
 )
 $ErrorActionPreference = 'Stop'
--- a/scripts/powershell/update-agent-context.ps1
+++ b/scripts/powershell/update-agent-context.ps1
@@ -9,7 +9,7 @@ Mirrors the behavior of scripts/bash/update-agent-context.sh:
 2. Plan Data Extraction
 3. Agent File Management (create from template or update existing)
 4. Content Generation (technology stack, recent changes, timestamp)
- 5. Multi-Agent Support (claude, gemini, copilot, cursor-agent, qwen, opencode, codex, windsurf, kilocode, auggie, roo, codebuddy, amp, shai, tabnine, kiro-cli, agy, bob, vibe, qodercli, kimi, trae, generic)
+ 5. Multi-Agent Support (claude, gemini, copilot, cursor-agent, qwen, opencode, codex, windsurf, kilocode, auggie, roo, codebuddy, amp, shai, tabnine, kiro-cli, agy, bob, vibe, qodercli, kimi, trae, pi, iflow, generic)
 .PARAMETER AgentType
 Optional agent key to update a single agent. If omitted, updates all existing agent files (creating a default Claude file if none exist).
@@ -25,7 +25,7 @@ Relies on common helper functions in common.ps1
 #>
 param(
    [Parameter(Position=0)]
-    [ValidateSet('claude','gemini','copilot','cursor-agent','qwen','opencode','codex','windsurf','kilocode','auggie','roo','codebuddy','amp','shai','tabnine','kiro-cli','agy','bob','qodercli','vibe','kimi','trae','generic')]
+    [ValidateSet('claude','gemini','copilot','cursor-agent','qwen','opencode','codex','windsurf','kilocode','auggie','roo','codebuddy','amp','shai','tabnine','kiro-cli','agy','bob','qodercli','vibe','kimi','trae','pi','iflow','generic')]
    [string]$AgentType
 )
@@ -65,6 +65,7 @@ $BOB_FILE      = Join-Path $REPO_ROOT 'AGENTS.md'
 $VIBE_FILE     = Join-Path $REPO_ROOT '.vibe/agents/specify-agents.md'
 $KIMI_FILE     = Join-Path $REPO_ROOT 'KIMI.md'
 $TRAE_FILE     = Join-Path $REPO_ROOT '.trae/rules/AGENTS.md'
 $IFLOW_FILE    = Join-Path $REPO_ROOT 'IFLOW.md'
 $TEMPLATE_FILE = Join-Path $REPO_ROOT '.specify/templates/agent-file-template.md'
@@ -410,8 +411,10 @@ function Update-SpecificAgent {
        'vibe'     { Update-AgentFile -TargetFile $VIBE_FILE     -AgentName 'Mistral Vibe' }
        'kimi'     { Update-AgentFile -TargetFile $KIMI_FILE     -AgentName 'Kimi Code' }
        'trae'     { Update-AgentFile -TargetFile $TRAE_FILE     -AgentName 'Trae' }
        'pi'       { Update-AgentFile -TargetFile $AGENTS_FILE   -AgentName 'Pi Coding Agent' }
        'iflow'    { Update-AgentFile -TargetFile $IFLOW_FILE    -AgentName 'iFlow CLI' }
        'generic'  { Write-Info 'Generic agent: no predefined context file. Use the agent-specific update script for your agent.' }
-        default { Write-Err "Unknown agent type '$Type'"; Write-Err 'Expected: claude|gemini|copilot|cursor-agent|qwen|opencode|codex|windsurf|kilocode|auggie|roo|codebuddy|amp|shai|tabnine|kiro-cli|agy|bob|vibe|qodercli|kimi|trae|generic'; return $false }
+        default { Write-Err "Unknown agent type '$Type'"; Write-Err 'Expected: claude|gemini|copilot|cursor-agent|qwen|opencode|codex|windsurf|kilocode|auggie|roo|codebuddy|amp|shai|tabnine|kiro-cli|agy|bob|vibe|qodercli|kimi|trae|pi|iflow|generic'; return $false }
    }
 }
@@ -438,6 +441,7 @@ function Update-AllExistingAgents {
    if (Test-Path $VIBE_FILE)     { if (-not (Update-AgentFile -TargetFile $VIBE_FILE     -AgentName 'Mistral Vibe')) { $ok = $false }; $found = $true }
    if (Test-Path $KIMI_FILE)     { if (-not (Update-AgentFile -TargetFile $KIMI_FILE     -AgentName 'Kimi Code')) { $ok = $false }; $found = $true }
    if (Test-Path $TRAE_FILE)     { if (-not (Update-AgentFile -TargetFile $TRAE_FILE     -AgentName 'Trae')) { $ok = $false }; $found = $true }
    if (Test-Path $IFLOW_FILE)    { if (-not (Update-AgentFile -TargetFile $IFLOW_FILE    -AgentName 'iFlow CLI')) { $ok = $false }; $found = $true }
    if (-not $found) {
        Write-Info 'No existing agent files found, creating default Claude file...'
        if (-not (Update-AgentFile -TargetFile $CLAUDE_FILE -AgentName 'Claude Code')) { $ok = $false }
@@ -452,7 +456,7 @@ function Print-Summary {
    if ($NEW_FRAMEWORK) { Write-Host "  - Added framework: $NEW_FRAMEWORK" }
    if ($NEW_DB -and $NEW_DB -ne 'N/A') { Write-Host "  - Added database: $NEW_DB" }
    Write-Host ''
-    Write-Info 'Usage: ./update-agent-context.ps1 [-AgentType claude|gemini|copilot|cursor-agent|qwen|opencode|codex|windsurf|kilocode|auggie|roo|codebuddy|amp|shai|tabnine|kiro-cli|agy|bob|vibe|qodercli|generic]'
+    Write-Info 'Usage: ./update-agent-context.ps1 [-AgentType claude|gemini|copilot|cursor-agent|qwen|opencode|codex|windsurf|kilocode|auggie|roo|codebuddy|amp|shai|tabnine|kiro-cli|agy|bob|vibe|qodercli|kimi|trae|pi|iflow|generic]'
 }
 function Main {
--- a/src/specify_cli/init.py
+++ b/src/specify_cli/init.py
@@ -282,6 +282,20 @@ AGENT_CONFIG = {
        "install_url": None,  # IDE-based
        "requires_cli": False,
    },
    "pi": {
        "name": "Pi Coding Agent",
        "folder": ".pi/",
        "commands_subdir": "prompts",
        "install_url": "https://www.npmjs.com/package/@mariozechner/pi-coding-agent",
        "requires_cli": True,
    },
    "iflow": {
        "name": "iFlow CLI",
        "folder": ".iflow/",
        "commands_subdir": "commands",
        "install_url": "https://docs.iflow.cn/en/cli/quickstart",
        "requires_cli": True,
    },
    "generic": {
        "name": "Generic (bring your own agent)",
        "folder": None,  # Set dynamically via --ai-commands-dir
@@ -2405,6 +2419,89 @@ def preset_set_priority(
    console.print("\n[dim]Lower priority = higher precedence in template resolution[/dim]")
@preset_app.command("enable")
 def preset_enable(
    pack_id: str = typer.Argument(help="Preset ID to enable"),
 ):
    """Enable a disabled preset."""
    from .presets import PresetManager
    project_root = Path.cwd()
    # Check if we're in a spec-kit project
    specify_dir = project_root / ".specify"
    if not specify_dir.exists():
        console.print("[red]Error:[/red] Not a spec-kit project (no .specify/ directory)")
        console.print("Run this command from a spec-kit project root")
        raise typer.Exit(1)
    manager = PresetManager(project_root)
    # Check if preset is installed
    if not manager.registry.is_installed(pack_id):
        console.print(f"[red]Error:[/red] Preset '{pack_id}' is not installed")
        raise typer.Exit(1)
    # Get current metadata
    metadata = manager.registry.get(pack_id)
    if metadata is None or not isinstance(metadata, dict):
        console.print(f"[red]Error:[/red] Preset '{pack_id}' not found in registry (corrupted state)")
        raise typer.Exit(1)
    if metadata.get("enabled", True):
        console.print(f"[yellow]Preset '{pack_id}' is already enabled[/yellow]")
        raise typer.Exit(0)
    # Enable the preset
    manager.registry.update(pack_id, {"enabled": True})
    console.print(f"[green]✓[/green] Preset '{pack_id}' enabled")
    console.print("\nTemplates from this preset will now be included in resolution.")
    console.print("[dim]Note: Previously registered commands/skills remain active.[/dim]")
@preset_app.command("disable")
 def preset_disable(
    pack_id: str = typer.Argument(help="Preset ID to disable"),
 ):
    """Disable a preset without removing it."""
    from .presets import PresetManager
    project_root = Path.cwd()
    # Check if we're in a spec-kit project
    specify_dir = project_root / ".specify"
    if not specify_dir.exists():
        console.print("[red]Error:[/red] Not a spec-kit project (no .specify/ directory)")
        console.print("Run this command from a spec-kit project root")
        raise typer.Exit(1)
    manager = PresetManager(project_root)
    # Check if preset is installed
    if not manager.registry.is_installed(pack_id):
        console.print(f"[red]Error:[/red] Preset '{pack_id}' is not installed")
        raise typer.Exit(1)
    # Get current metadata
    metadata = manager.registry.get(pack_id)
    if metadata is None or not isinstance(metadata, dict):
        console.print(f"[red]Error:[/red] Preset '{pack_id}' not found in registry (corrupted state)")
        raise typer.Exit(1)
    if not metadata.get("enabled", True):
        console.print(f"[yellow]Preset '{pack_id}' is already disabled[/yellow]")
        raise typer.Exit(0)
    # Disable the preset
    manager.registry.update(pack_id, {"enabled": False})
    console.print(f"[green]✓[/green] Preset '{pack_id}' disabled")
    console.print("\nTemplates from this preset will be skipped during resolution.")
    console.print("[dim]Note: Previously registered commands/skills remain active until preset removal.[/dim]")
    console.print(f"To re-enable: specify preset enable {pack_id}")
 # ===== Preset Catalog Commands =====
@@ -3841,8 +3938,7 @@ def extension_enable(
        console.print(f"[yellow]Extension '{display_name}' is already enabled[/yellow]")
        raise typer.Exit(0)
-    metadata["enabled"] = True
+    manager.registry.update(extension_id, {"enabled": True})
    manager.registry.update(extension_id, metadata)
    # Enable hooks in extensions.yml
    config = hook_executor.get_project_config()
@@ -3889,8 +3985,7 @@ def extension_disable(
        console.print(f"[yellow]Extension '{display_name}' is already disabled[/yellow]")
        raise typer.Exit(0)
-    metadata["enabled"] = False
+    manager.registry.update(extension_id, {"enabled": False})
    manager.registry.update(extension_id, metadata)
    # Disable hooks in extensions.yml
    config = hook_executor.get_project_config()
--- a/src/specify_cli/agents.py
+++ b/src/specify_cli/agents.py
@@ -106,6 +106,12 @@ class CommandRegistrar:
            "args": "$ARGUMENTS",
            "extension": ".md"
        },
        "pi": {
            "dir": ".pi/prompts",
            "format": "markdown",
            "args": "$ARGUMENTS",
            "extension": ".md"
        },
        "amp": {
            "dir": ".agents/commands",
            "format": "markdown",
@@ -141,6 +147,12 @@ class CommandRegistrar:
            "format": "markdown",
            "args": "$ARGUMENTS",
            "extension": ".md"
        },
        "iflow": {
            "dir": ".iflow/commands",
            "format": "markdown",
            "args": "$ARGUMENTS",
            "extension": ".md"
        }
    }
--- a/src/specify_cli/extensions.py
+++ b/src/specify_cli/extensions.py
@@ -222,7 +222,17 @@ class ExtensionRegistry:
        try:
            with open(self.registry_path, 'r') as f:
-                return json.load(f)
+                data = json.load(f)
            # Validate loaded data is a dict (handles corrupted registry files)
            if not isinstance(data, dict):
                return {
                    "schema_version": self.SCHEMA_VERSION,
                    "extensions": {}
                }
            # Normalize extensions field (handles corrupted extensions value)
            if not isinstance(data.get("extensions"), dict):
                data["extensions"] = {}
            return data
        except (json.JSONDecodeError, FileNotFoundError):
            # Corrupted or missing registry, start fresh
            return {
@@ -244,7 +254,7 @@ class ExtensionRegistry:
            metadata: Extension metadata (version, source, etc.)
        """
        self.data["extensions"][extension_id] = {
-            **metadata,
+            **copy.deepcopy(metadata),
            "installed_at": datetime.now(timezone.utc).isoformat()
        }
        self._save()
@@ -267,15 +277,16 @@ class ExtensionRegistry:
        Raises:
            KeyError: If extension is not installed
        """
-        if extension_id not in self.data["extensions"]:
+        extensions = self.data.get("extensions")
        if not isinstance(extensions, dict) or extension_id not in extensions:
            raise KeyError(f"Extension '{extension_id}' is not installed")
        # Merge new metadata with existing, preserving original installed_at
-        existing = self.data["extensions"][extension_id]
+        existing = extensions[extension_id]
        # Handle corrupted registry entries (e.g., string/list instead of dict)
        if not isinstance(existing, dict):
            existing = {}
-        # Merge: existing fields preserved, new fields override
+        # Merge: existing fields preserved, new fields override (deep copy to prevent caller mutation)
-        merged = {**existing, **metadata}
+        merged = {**existing, **copy.deepcopy(metadata)}
        # Always preserve original installed_at based on key existence, not truthiness,
        # to handle cases where the field exists but may be falsy (legacy/corruption)
        if "installed_at" in existing:
@@ -283,7 +294,7 @@ class ExtensionRegistry:
        else:
            # If not present in existing, explicitly remove from merged if caller provided it
            merged.pop("installed_at", None)
-        self.data["extensions"][extension_id] = merged
+        extensions[extension_id] = merged
        self._save()
    def restore(self, extension_id: str, metadata: dict):
@@ -296,8 +307,16 @@ class ExtensionRegistry:
        Args:
            extension_id: Extension ID
            metadata: Complete extension metadata including installed_at
        Raises:
            ValueError: If metadata is None or not a dict
        """
-        self.data["extensions"][extension_id] = dict(metadata)
+        if metadata is None or not isinstance(metadata, dict):
            raise ValueError(f"Cannot restore '{extension_id}': metadata must be a dict")
        # Ensure extensions dict exists (handle corrupted registry)
        if not isinstance(self.data.get("extensions"), dict):
            self.data["extensions"] = {}
        self.data["extensions"][extension_id] = copy.deepcopy(metadata)
        self._save()
    def remove(self, extension_id: str):
@@ -306,8 +325,11 @@ class ExtensionRegistry:
        Args:
            extension_id: Extension ID
        """
-        if extension_id in self.data["extensions"]:
+        extensions = self.data.get("extensions")
-            del self.data["extensions"][extension_id]
+        if not isinstance(extensions, dict):
            return
        if extension_id in extensions:
            del extensions[extension_id]
            self._save()
    def get(self, extension_id: str) -> Optional[dict]:
@@ -320,21 +342,49 @@ class ExtensionRegistry:
            extension_id: Extension ID
        Returns:
-            Deep copy of extension metadata, or None if not found
+            Deep copy of extension metadata, or None if not found or corrupted
        """
-        entry = self.data["extensions"].get(extension_id)
+        extensions = self.data.get("extensions")
-        return copy.deepcopy(entry) if entry is not None else None
+        if not isinstance(extensions, dict):
            return None
        entry = extensions.get(extension_id)
        # Return None for missing or corrupted (non-dict) entries
        if entry is None or not isinstance(entry, dict):
            return None
        return copy.deepcopy(entry)
    def list(self) -> Dict[str, dict]:
-        """Get all installed extensions.
+        """Get all installed extensions with valid metadata.
-        Returns a deep copy of the extensions mapping to prevent callers
+        Returns a deep copy of extensions with dict metadata only.
-        from accidentally mutating nested internal registry state.
+        Corrupted entries (non-dict values) are filtered out.
        Returns:
-            Dictionary of extension_id -> metadata (deep copies)
+            Dictionary of extension_id -> metadata (deep copies), empty dict if corrupted
        """
-        return copy.deepcopy(self.data["extensions"])
+        extensions = self.data.get("extensions", {}) or {}
        if not isinstance(extensions, dict):
            return {}
        # Filter to only valid dict entries to match type contract
        return {
            ext_id: copy.deepcopy(meta)
            for ext_id, meta in extensions.items()
            if isinstance(meta, dict)
        }
    def keys(self) -> set:
        """Get all extension IDs including corrupted entries.
        Lightweight method that returns IDs without deep-copying metadata.
        Use this when you only need to check which extensions are tracked.
        Returns:
            Set of extension IDs (includes corrupted entries)
        """
        extensions = self.data.get("extensions", {}) or {}
        if not isinstance(extensions, dict):
            return set()
        return set(extensions.keys())
    def is_installed(self, extension_id: str) -> bool:
        """Check if extension is installed.
@@ -343,17 +393,23 @@ class ExtensionRegistry:
            extension_id: Extension ID
        Returns:
-            True if extension is installed
+            True if extension is installed, False if not or registry corrupted
        """
-        return extension_id in self.data["extensions"]
+        extensions = self.data.get("extensions")
        if not isinstance(extensions, dict):
            return False
        return extension_id in extensions
-    def list_by_priority(self) -> List[tuple]:
+    def list_by_priority(self, include_disabled: bool = False) -> List[tuple]:
        """Get all installed extensions sorted by priority.
        Lower priority number = higher precedence (checked first).
        Extensions with equal priority are sorted alphabetically by ID
        for deterministic ordering.
        Args:
            include_disabled: If True, include disabled extensions. Default False.
        Returns:
            List of (extension_id, metadata_copy) tuples sorted by priority.
            Metadata is deep-copied to prevent accidental mutation.
@@ -365,6 +421,9 @@ class ExtensionRegistry:
        for ext_id, meta in extensions.items():
            if not isinstance(meta, dict):
                continue
            # Skip disabled extensions unless explicitly requested
            if not include_disabled and not meta.get("enabled", True):
                continue
            metadata_copy = copy.deepcopy(meta)
            metadata_copy["priority"] = normalize_priority(metadata_copy.get("priority", 10))
            sortable_extensions.append((ext_id, metadata_copy))
@@ -633,7 +692,7 @@ class ExtensionManager:
        # Get registered commands before removal
        metadata = self.registry.get(extension_id)
-        registered_commands = metadata.get("registered_commands", {})
+        registered_commands = metadata.get("registered_commands", {}) if metadata else {}
        extension_dir = self.extensions_dir / extension_id
--- a/src/specify_cli/presets.py
+++ b/src/specify_cli/presets.py
@@ -238,7 +238,17 @@ class PresetRegistry:
        try:
            with open(self.registry_path, 'r') as f:
-                return json.load(f)
+                data = json.load(f)
            # Validate loaded data is a dict (handles corrupted registry files)
            if not isinstance(data, dict):
                return {
                    "schema_version": self.SCHEMA_VERSION,
                    "presets": {}
                }
            # Normalize presets field (handles corrupted presets value)
            if not isinstance(data.get("presets"), dict):
                data["presets"] = {}
            return data
        except (json.JSONDecodeError, FileNotFoundError):
            return {
                "schema_version": self.SCHEMA_VERSION,
@@ -259,7 +269,7 @@ class PresetRegistry:
            metadata: Pack metadata (version, source, etc.)
        """
        self.data["presets"][pack_id] = {
-            **metadata,
+            **copy.deepcopy(metadata),
            "installed_at": datetime.now(timezone.utc).isoformat()
        }
        self._save()
@@ -270,8 +280,11 @@ class PresetRegistry:
        Args:
            pack_id: Preset ID
        """
-        if pack_id in self.data["presets"]:
+        packs = self.data.get("presets")
-            del self.data["presets"][pack_id]
+        if not isinstance(packs, dict):
            return
        if pack_id in packs:
            del packs[pack_id]
            self._save()
    def update(self, pack_id: str, updates: dict):
@@ -288,14 +301,15 @@ class PresetRegistry:
        Raises:
            KeyError: If preset is not installed
        """
-        if pack_id not in self.data["presets"]:
+        packs = self.data.get("presets")
        if not isinstance(packs, dict) or pack_id not in packs:
            raise KeyError(f"Preset '{pack_id}' not found in registry")
-        existing = self.data["presets"][pack_id]
+        existing = packs[pack_id]
        # Handle corrupted registry entries (e.g., string/list instead of dict)
        if not isinstance(existing, dict):
            existing = {}
-        # Merge: existing fields preserved, new fields override
+        # Merge: existing fields preserved, new fields override (deep copy to prevent caller mutation)
-        merged = {**existing, **updates}
+        merged = {**existing, **copy.deepcopy(updates)}
        # Always preserve original installed_at based on key existence, not truthiness,
        # to handle cases where the field exists but may be falsy (legacy/corruption)
        if "installed_at" in existing:
@@ -303,35 +317,95 @@ class PresetRegistry:
        else:
            # If not present in existing, explicitly remove from merged if caller provided it
            merged.pop("installed_at", None)
-        self.data["presets"][pack_id] = merged
+        packs[pack_id] = merged
        self._save()
    def restore(self, pack_id: str, metadata: dict):
        """Restore preset metadata to registry without modifying timestamps.
        Use this method for rollback scenarios where you have a complete backup
        of the registry entry (including installed_at) and want to restore it
        exactly as it was.
        Args:
            pack_id: Preset ID
            metadata: Complete preset metadata including installed_at
        Raises:
            ValueError: If metadata is None or not a dict
        """
        if metadata is None or not isinstance(metadata, dict):
            raise ValueError(f"Cannot restore '{pack_id}': metadata must be a dict")
        # Ensure presets dict exists (handle corrupted registry)
        if not isinstance(self.data.get("presets"), dict):
            self.data["presets"] = {}
        self.data["presets"][pack_id] = copy.deepcopy(metadata)
        self._save()
    def get(self, pack_id: str) -> Optional[dict]:
        """Get preset metadata from registry.
        Returns a deep copy to prevent callers from accidentally mutating
        nested internal registry state without going through the write path.
        Args:
            pack_id: Preset ID
        Returns:
-            Pack metadata or None if not found
+            Deep copy of preset metadata, or None if not found or corrupted
        """
-        return self.data["presets"].get(pack_id)
+        packs = self.data.get("presets")
        if not isinstance(packs, dict):
            return None
        entry = packs.get(pack_id)
        # Return None for missing or corrupted (non-dict) entries
        if entry is None or not isinstance(entry, dict):
            return None
        return copy.deepcopy(entry)
    def list(self) -> Dict[str, dict]:
-        """Get all installed presets.
+        """Get all installed presets with valid metadata.
        Returns a deep copy of presets with dict metadata only.
        Corrupted entries (non-dict values) are filtered out.
        Returns:
-            Dictionary of pack_id -> metadata
+            Dictionary of pack_id -> metadata (deep copies), empty dict if corrupted
        """
-        return self.data["presets"]
+        packs = self.data.get("presets", {}) or {}
        if not isinstance(packs, dict):
            return {}
        # Filter to only valid dict entries to match type contract
        return {
            pack_id: copy.deepcopy(meta)
            for pack_id, meta in packs.items()
            if isinstance(meta, dict)
        }
-    def list_by_priority(self) -> List[tuple]:
+    def keys(self) -> set:
        """Get all preset IDs including corrupted entries.
        Lightweight method that returns IDs without deep-copying metadata.
        Use this when you only need to check which presets are tracked.
        Returns:
            Set of preset IDs (includes corrupted entries)
        """
        packs = self.data.get("presets", {}) or {}
        if not isinstance(packs, dict):
            return set()
        return set(packs.keys())
    def list_by_priority(self, include_disabled: bool = False) -> List[tuple]:
        """Get all installed presets sorted by priority.
        Lower priority number = higher precedence (checked first).
        Presets with equal priority are sorted alphabetically by ID
        for deterministic ordering.
        Args:
            include_disabled: If True, include disabled presets. Default False.
        Returns:
            List of (pack_id, metadata_copy) tuples sorted by priority.
            Metadata is deep-copied to prevent accidental mutation.
@@ -343,6 +417,9 @@ class PresetRegistry:
        for pack_id, meta in packs.items():
            if not isinstance(meta, dict):
                continue
            # Skip disabled presets unless explicitly requested
            if not include_disabled and not meta.get("enabled", True):
                continue
            metadata_copy = copy.deepcopy(meta)
            metadata_copy["priority"] = normalize_priority(metadata_copy.get("priority", 10))
            sortable_packs.append((pack_id, metadata_copy))
@@ -358,9 +435,12 @@ class PresetRegistry:
            pack_id: Preset ID
        Returns:
-            True if pack is installed
+            True if pack is installed, False if not or registry corrupted
        """
-        return pack_id in self.data["presets"]
+        packs = self.data.get("presets")
        if not isinstance(packs, dict):
            return False
        return pack_id in packs
 class PresetManager:
@@ -1466,12 +1546,20 @@ class PresetResolver:
            return []
        registry = ExtensionRegistry(self.extensions_dir)
-        registered_extensions = registry.list_by_priority()
+        # Use keys() to track ALL extensions (including corrupted entries) without deep copy
-        registered_extension_ids = {ext_id for ext_id, _ in registered_extensions}
+        # This prevents corrupted entries from being picked up as "unregistered" dirs
        registered_extension_ids = registry.keys()
        # Get all registered extensions including disabled; we filter disabled manually below
        all_registered = registry.list_by_priority(include_disabled=True)
        all_extensions: list[tuple[int, str, dict | None]] = []
-        for ext_id, metadata in registered_extensions:
+        # Only include enabled extensions in the result
        for ext_id, metadata in all_registered:
            # Skip disabled extensions
            if not metadata.get("enabled", True):
                continue
            priority = normalize_priority(metadata.get("priority") if metadata else None)
            all_extensions.append((priority, ext_id, metadata))
--- a/templates/commands/implement.md
+++ b/templates/commands/implement.md
@@ -19,7 +19,7 @@ You **MUST** consider the user input before proceeding (if not empty).
 - Check if `.specify/extensions.yml` exists in the project root.
 - If it exists, read it and look for entries under the `hooks.before_implement` key
 - If the YAML cannot be parsed or is invalid, skip hook checking silently and continue normally
- Filter to only hooks where `enabled: true`
+- Filter out hooks where `enabled` is explicitly `false`. Treat hooks without an `enabled` field as enabled by default.
 - For each remaining hook, do **not** attempt to interpret or evaluate hook `condition` expressions:
  - If the hook has no `condition` field, or it is null/empty, treat the hook as executable
  - If the hook defines a non-empty `condition`, skip the hook and leave condition evaluation to the HookExecutor implementation
@@ -174,7 +174,7 @@ Note: This command assumes a complete task breakdown exists in tasks.md. If task
 10. **Check for extension hooks**: After completion validation, check if `.specify/extensions.yml` exists in the project root.
    - If it exists, read it and look for entries under the `hooks.after_implement` key
    - If the YAML cannot be parsed or is invalid, skip hook checking silently and continue normally
-    - Filter to only hooks where `enabled: true`
+    - Filter out hooks where `enabled` is explicitly `false`. Treat hooks without an `enabled` field as enabled by default.
    - For each remaining hook, do **not** attempt to interpret or evaluate hook `condition` expressions:
      - If the hook has no `condition` field, or it is null/empty, treat the hook as executable
      - If the hook defines a non-empty `condition`, skip the hook and leave condition evaluation to the HookExecutor implementation
--- a/templates/commands/plan.md
+++ b/templates/commands/plan.md
@@ -24,6 +24,40 @@ $ARGUMENTS
 You **MUST** consider the user input before proceeding (if not empty).
 ## Pre-Execution Checks
 **Check for extension hooks (before planning)**:
 - Check if `.specify/extensions.yml` exists in the project root.
 - If it exists, read it and look for entries under the `hooks.before_plan` key
 - If the YAML cannot be parsed or is invalid, skip hook checking silently and continue normally
 - Filter out hooks where `enabled` is explicitly `false`. Treat hooks without an `enabled` field as enabled by default.
 - For each remaining hook, do **not** attempt to interpret or evaluate hook `condition` expressions:
  - If the hook has no `condition` field, or it is null/empty, treat the hook as executable
  - If the hook defines a non-empty `condition`, skip the hook and leave condition evaluation to the HookExecutor implementation
 - For each executable hook, output the following based on its `optional` flag:
  - **Optional hook** (`optional: true`):
    ```
    ## Extension Hooks
    **Optional Pre-Hook**: {extension}
    Command: `/{command}`
    Description: {description}
    Prompt: {prompt}
    To execute: `/{command}`
    ```
  - **Mandatory hook** (`optional: false`):
    ```
    ## Extension Hooks
    **Automatic Pre-Hook**: {extension}
    Executing: `/{command}`
    EXECUTE_COMMAND: {command}
    Wait for the result of the hook command before proceeding to the Outline.
    ```
 - If no hooks are registered or `.specify/extensions.yml` does not exist, skip silently
 ## Outline
 1. **Setup**: Run `{SCRIPT}` from repo root and parse JSON for FEATURE_SPEC, IMPL_PLAN, SPECS_DIR, BRANCH. For single quotes in args like "I'm Groot", use escape syntax: e.g 'I'\''m Groot' (or double-quote if possible: "I'm Groot").
@@ -41,6 +75,35 @@ You **MUST** consider the user input before proceeding (if not empty).
 4. **Stop and report**: Command ends after Phase 2 planning. Report branch, IMPL_PLAN path, and generated artifacts.
 5. **Check for extension hooks**: After reporting, check if `.specify/extensions.yml` exists in the project root.
   - If it exists, read it and look for entries under the `hooks.after_plan` key
   - If the YAML cannot be parsed or is invalid, skip hook checking silently and continue normally
   - Filter out hooks where `enabled` is explicitly `false`. Treat hooks without an `enabled` field as enabled by default.
   - For each remaining hook, do **not** attempt to interpret or evaluate hook `condition` expressions:
     - If the hook has no `condition` field, or it is null/empty, treat the hook as executable
     - If the hook defines a non-empty `condition`, skip the hook and leave condition evaluation to the HookExecutor implementation
   - For each executable hook, output the following based on its `optional` flag:
     - **Optional hook** (`optional: true`):
       ```
       ## Extension Hooks
       **Optional Hook**: {extension}
       Command: `/{command}`
       Description: {description}
       Prompt: {prompt}
       To execute: `/{command}`
       ```
     - **Mandatory hook** (`optional: false`):
       ```
       ## Extension Hooks
       **Automatic Hook**: {extension}
       Executing: `/{command}`
       EXECUTE_COMMAND: {command}
       ```
   - If no hooks are registered or `.specify/extensions.yml` does not exist, skip silently
 ## Phases
 ### Phase 0: Outline & Research
--- a/templates/commands/specify.md
+++ b/templates/commands/specify.md
@@ -21,6 +21,40 @@ $ARGUMENTS
 You **MUST** consider the user input before proceeding (if not empty).
 ## Pre-Execution Checks
 **Check for extension hooks (before specification)**:
 - Check if `.specify/extensions.yml` exists in the project root.
 - If it exists, read it and look for entries under the `hooks.before_specify` key
 - If the YAML cannot be parsed or is invalid, skip hook checking silently and continue normally
 - Filter out hooks where `enabled` is explicitly `false`. Treat hooks without an `enabled` field as enabled by default.
 - For each remaining hook, do **not** attempt to interpret or evaluate hook `condition` expressions:
  - If the hook has no `condition` field, or it is null/empty, treat the hook as executable
  - If the hook defines a non-empty `condition`, skip the hook and leave condition evaluation to the HookExecutor implementation
 - For each executable hook, output the following based on its `optional` flag:
  - **Optional hook** (`optional: true`):
    ```
    ## Extension Hooks
    **Optional Pre-Hook**: {extension}
    Command: `/{command}`
    Description: {description}
    Prompt: {prompt}
    To execute: `/{command}`
    ```
  - **Mandatory hook** (`optional: false`):
    ```
    ## Extension Hooks
    **Automatic Pre-Hook**: {extension}
    Executing: `/{command}`
    EXECUTE_COMMAND: {command}
    Wait for the result of the hook command before proceeding to the Outline.
    ```
 - If no hooks are registered or `.specify/extensions.yml` does not exist, skip silently
 ## Outline
 The text the user typed after `/speckit.specify` in the triggering message **is** the feature description. Assume you always have it available in this conversation even if `{ARGS}` appears literally below. Do not ask the user to repeat it unless they provided an empty command.
@@ -176,6 +210,35 @@ Given that feature description, do this:
 7. Report completion with branch name, spec file path, checklist results, and readiness for the next phase (`/speckit.clarify` or `/speckit.plan`).
 8. **Check for extension hooks**: After reporting completion, check if `.specify/extensions.yml` exists in the project root.
   - If it exists, read it and look for entries under the `hooks.after_specify` key
   - If the YAML cannot be parsed or is invalid, skip hook checking silently and continue normally
   - Filter out hooks where `enabled` is explicitly `false`. Treat hooks without an `enabled` field as enabled by default.
   - For each remaining hook, do **not** attempt to interpret or evaluate hook `condition` expressions:
     - If the hook has no `condition` field, or it is null/empty, treat the hook as executable
     - If the hook defines a non-empty `condition`, skip the hook and leave condition evaluation to the HookExecutor implementation
   - For each executable hook, output the following based on its `optional` flag:
     - **Optional hook** (`optional: true`):
       ```
       ## Extension Hooks
       **Optional Hook**: {extension}
       Command: `/{command}`
       Description: {description}
       Prompt: {prompt}
       To execute: `/{command}`
       ```
     - **Mandatory hook** (`optional: false`):
       ```
       ## Extension Hooks
       **Automatic Hook**: {extension}
       Executing: `/{command}`
       EXECUTE_COMMAND: {command}
       ```
   - If no hooks are registered or `.specify/extensions.yml` does not exist, skip silently
 **NOTE:** The script creates and checks out the new branch and initializes the spec file before writing.
 ## Quick Guidelines
--- a/templates/commands/tasks.md
+++ b/templates/commands/tasks.md
@@ -28,7 +28,7 @@ You **MUST** consider the user input before proceeding (if not empty).
 - Check if `.specify/extensions.yml` exists in the project root.
 - If it exists, read it and look for entries under the `hooks.before_tasks` key
 - If the YAML cannot be parsed or is invalid, skip hook checking silently and continue normally
- Filter to only hooks where `enabled: true`
+- Filter out hooks where `enabled` is explicitly `false`. Treat hooks without an `enabled` field as enabled by default.
 - For each remaining hook, do **not** attempt to interpret or evaluate hook `condition` expressions:
  - If the hook has no `condition` field, or it is null/empty, treat the hook as executable
  - If the hook defines a non-empty `condition`, skip the hook and leave condition evaluation to the HookExecutor implementation
@@ -100,7 +100,7 @@ You **MUST** consider the user input before proceeding (if not empty).
 6. **Check for extension hooks**: After tasks.md is generated, check if `.specify/extensions.yml` exists in the project root.
   - If it exists, read it and look for entries under the `hooks.after_tasks` key
   - If the YAML cannot be parsed or is invalid, skip hook checking silently and continue normally
-   - Filter to only hooks where `enabled: true`
+   - Filter out hooks where `enabled` is explicitly `false`. Treat hooks without an `enabled` field as enabled by default.
   - For each remaining hook, do **not** attempt to interpret or evaluate hook `condition` expressions:
     - If the hook has no `condition` field, or it is null/empty, treat the hook as executable
     - If the hook defines a non-empty `condition`, skip the hook and leave condition evaluation to the HookExecutor implementation
--- a/tests/test_agent_config_consistency.py
+++ b/tests/test_agent_config_consistency.py
@@ -309,3 +309,145 @@ class TestAgentConfigConsistency:
    def test_ai_help_includes_trae(self):
        """CLI help text for --ai should include trae."""
        assert "trae" in AI_ASSISTANT_HELP
    # --- Pi Coding Agent consistency checks ---
    def test_pi_in_agent_config(self):
        """AGENT_CONFIG should include pi with correct folder and commands_subdir."""
        assert "pi" in AGENT_CONFIG
        assert AGENT_CONFIG["pi"]["folder"] == ".pi/"
        assert AGENT_CONFIG["pi"]["commands_subdir"] == "prompts"
        assert AGENT_CONFIG["pi"]["requires_cli"] is True
        assert AGENT_CONFIG["pi"]["install_url"] is not None
    def test_pi_in_extension_registrar(self):
        """Extension command registrar should include pi using .pi/prompts."""
        cfg = CommandRegistrar.AGENT_CONFIGS
        assert "pi" in cfg
        pi_cfg = cfg["pi"]
        assert pi_cfg["dir"] == ".pi/prompts"
        assert pi_cfg["format"] == "markdown"
        assert pi_cfg["args"] == "$ARGUMENTS"
        assert pi_cfg["extension"] == ".md"
    def test_pi_in_release_agent_lists(self):
        """Bash and PowerShell release scripts should include pi in agent lists."""
        sh_text = (REPO_ROOT / ".github" / "workflows" / "scripts" / "create-release-packages.sh").read_text(encoding="utf-8")
        ps_text = (REPO_ROOT / ".github" / "workflows" / "scripts" / "create-release-packages.ps1").read_text(encoding="utf-8")
        sh_match = re.search(r"ALL_AGENTS=\(([^)]*)\)", sh_text)
        assert sh_match is not None
        sh_agents = sh_match.group(1).split()
        ps_match = re.search(r"\$AllAgents = @\(([^)]*)\)", ps_text)
        assert ps_match is not None
        ps_agents = re.findall(r"'([^']+)'", ps_match.group(1))
        assert "pi" in sh_agents
        assert "pi" in ps_agents
    def test_release_scripts_generate_pi_prompt_templates(self):
        """Release scripts should generate Markdown prompt templates for pi in .pi/prompts."""
        sh_text = (REPO_ROOT / ".github" / "workflows" / "scripts" / "create-release-packages.sh").read_text(encoding="utf-8")
        ps_text = (REPO_ROOT / ".github" / "workflows" / "scripts" / "create-release-packages.ps1").read_text(encoding="utf-8")
        assert ".pi/prompts" in sh_text
        assert ".pi/prompts" in ps_text
        assert re.search(r"pi\)\s*\n.*?\.pi/prompts", sh_text, re.S) is not None
        assert re.search(r"'pi'\s*\{.*?\.pi/prompts", ps_text, re.S) is not None
    def test_pi_in_powershell_validate_set(self):
        """PowerShell update-agent-context script should include 'pi' in ValidateSet."""
        ps_text = (REPO_ROOT / "scripts" / "powershell" / "update-agent-context.ps1").read_text(encoding="utf-8")
        validate_set_match = re.search(r"\[ValidateSet\(([^)]*)\)\]", ps_text)
        assert validate_set_match is not None
        validate_set_values = re.findall(r"'([^']+)'", validate_set_match.group(1))
        assert "pi" in validate_set_values
    def test_pi_in_github_release_output(self):
        """GitHub release script should include pi template packages."""
        gh_release_text = (REPO_ROOT / ".github" / "workflows" / "scripts" / "create-github-release.sh").read_text(encoding="utf-8")
        assert "spec-kit-template-pi-sh-" in gh_release_text
        assert "spec-kit-template-pi-ps-" in gh_release_text
    def test_agent_context_scripts_include_pi(self):
        """Agent context scripts should support pi agent type."""
        bash_text = (REPO_ROOT / "scripts" / "bash" / "update-agent-context.sh").read_text(encoding="utf-8")
        pwsh_text = (REPO_ROOT / "scripts" / "powershell" / "update-agent-context.ps1").read_text(encoding="utf-8")
        assert "pi" in bash_text
        assert "Pi Coding Agent" in bash_text
        assert "pi" in pwsh_text
        assert "Pi Coding Agent" in pwsh_text
    def test_ai_help_includes_pi(self):
        """CLI help text for --ai should include pi."""
        assert "pi" in AI_ASSISTANT_HELP
    # --- iFlow CLI consistency checks ---
    def test_iflow_in_agent_config(self):
        """AGENT_CONFIG should include iflow with correct folder and commands_subdir."""
        assert "iflow" in AGENT_CONFIG
        assert AGENT_CONFIG["iflow"]["folder"] == ".iflow/"
        assert AGENT_CONFIG["iflow"]["commands_subdir"] == "commands"
        assert AGENT_CONFIG["iflow"]["requires_cli"] is True
    def test_iflow_in_extension_registrar(self):
        """Extension command registrar should include iflow targeting .iflow/commands."""
        cfg = CommandRegistrar.AGENT_CONFIGS
        assert "iflow" in cfg
        assert cfg["iflow"]["dir"] == ".iflow/commands"
        assert cfg["iflow"]["format"] == "markdown"
        assert cfg["iflow"]["args"] == "$ARGUMENTS"
    def test_iflow_in_release_agent_lists(self):
        """Bash and PowerShell release scripts should include iflow in agent lists."""
        sh_text = (REPO_ROOT / ".github" / "workflows" / "scripts" / "create-release-packages.sh").read_text(encoding="utf-8")
        ps_text = (REPO_ROOT / ".github" / "workflows" / "scripts" / "create-release-packages.ps1").read_text(encoding="utf-8")
        sh_match = re.search(r"ALL_AGENTS=\(([^)]*)\)", sh_text)
        assert sh_match is not None
        sh_agents = sh_match.group(1).split()
        ps_match = re.search(r"\$AllAgents = @\(([^)]*)\)", ps_text)
        assert ps_match is not None
        ps_agents = re.findall(r"'([^']+)'", ps_match.group(1))
        assert "iflow" in sh_agents
        assert "iflow" in ps_agents
    def test_iflow_in_release_scripts_build_variant(self):
        """Release scripts should generate Markdown commands for iflow in .iflow/commands."""
        sh_text = (REPO_ROOT / ".github" / "workflows" / "scripts" / "create-release-packages.sh").read_text(encoding="utf-8")
        ps_text = (REPO_ROOT / ".github" / "workflows" / "scripts" / "create-release-packages.ps1").read_text(encoding="utf-8")
        assert ".iflow/commands" in sh_text
        assert ".iflow/commands" in ps_text
        assert re.search(r"'iflow'\s*\{.*?\.iflow/commands", ps_text, re.S) is not None
    def test_iflow_in_github_release_output(self):
        """GitHub release script should include iflow template packages."""
        gh_release_text = (REPO_ROOT / ".github" / "workflows" / "scripts" / "create-github-release.sh").read_text(encoding="utf-8")
        assert "spec-kit-template-iflow-sh-" in gh_release_text
        assert "spec-kit-template-iflow-ps-" in gh_release_text
    def test_iflow_in_agent_context_scripts(self):
        """Agent context scripts should support iflow agent type."""
        bash_text = (REPO_ROOT / "scripts" / "bash" / "update-agent-context.sh").read_text(encoding="utf-8")
        pwsh_text = (REPO_ROOT / "scripts" / "powershell" / "update-agent-context.ps1").read_text(encoding="utf-8")
        assert "iflow" in bash_text
        assert "IFLOW_FILE" in bash_text
        assert "iflow" in pwsh_text
        assert "IFLOW_FILE" in pwsh_text
    def test_ai_help_includes_iflow(self):
        """CLI help text for --ai should include iflow."""
        assert "iflow" in AI_ASSISTANT_HELP
--- a/tests/test_ai_skills.py
+++ b/tests/test_ai_skills.py
@@ -182,6 +182,11 @@ class TestGetSkillsDir:
        result = _get_skills_dir(project_dir, "kiro-cli")
        assert result == project_dir / ".kiro" / "skills"
    def test_pi_skills_dir(self, project_dir):
        """Pi should use .pi/skills/."""
        result = _get_skills_dir(project_dir, "pi")
        assert result == project_dir / ".pi" / "skills"
    def test_unknown_agent_uses_default(self, project_dir):
        """Unknown agents should fall back to DEFAULT_SKILLS_DIR."""
        result = _get_skills_dir(project_dir, "nonexistent-agent")
@@ -422,6 +427,27 @@ class TestInstallAiSkills:
        assert (cmds_dir / "speckit.specify.md").exists()
        assert (cmds_dir / "speckit.plan.md").exists()
    def test_pi_prompt_dir_installs_skills(self, project_dir):
        """Pi should install skills directly from .pi/prompts/."""
        prompts_dir = project_dir / ".pi" / "prompts"
        prompts_dir.mkdir(parents=True)
        (prompts_dir / "speckit.specify.md").write_text(
            "---\ndescription: Create or update the feature specification.\n---\n\n# Specify\n\nBody.\n"
        )
        (prompts_dir / "speckit.plan.md").write_text(
            "---\ndescription: Generate implementation plan.\n---\n\n# Plan\n\nBody.\n"
        )
        result = install_ai_skills(project_dir, "pi")
        assert result is True
        skills_dir = project_dir / ".pi" / "skills"
        assert skills_dir.exists()
        skill_dirs = [d.name for d in skills_dir.iterdir() if d.is_dir()]
        assert len(skill_dirs) >= 1
        assert (prompts_dir / "speckit.specify.md").exists()
        assert (prompts_dir / "speckit.plan.md").exists()
    @pytest.mark.parametrize("agent_key", [k for k in AGENT_CONFIG.keys() if k != "generic"])
    def test_skills_install_for_all_agents(self, temp_dir, agent_key):
        """install_ai_skills should produce skills for every configured agent."""
--- a/tests/test_extensions.py
+++ b/tests/test_extensions.py
@@ -420,6 +420,48 @@ class TestExtensionRegistry:
        assert registry.is_installed("test-ext")
        assert registry.get("test-ext")["version"] == "1.0.0"
    def test_restore_rejects_none_metadata(self, temp_dir):
        """Test restore() raises ValueError for None metadata."""
        extensions_dir = temp_dir / "extensions"
        extensions_dir.mkdir()
        registry = ExtensionRegistry(extensions_dir)
        with pytest.raises(ValueError, match="metadata must be a dict"):
            registry.restore("test-ext", None)
    def test_restore_rejects_non_dict_metadata(self, temp_dir):
        """Test restore() raises ValueError for non-dict metadata."""
        extensions_dir = temp_dir / "extensions"
        extensions_dir.mkdir()
        registry = ExtensionRegistry(extensions_dir)
        with pytest.raises(ValueError, match="metadata must be a dict"):
            registry.restore("test-ext", "not-a-dict")
        with pytest.raises(ValueError, match="metadata must be a dict"):
            registry.restore("test-ext", ["list", "not", "dict"])
    def test_restore_uses_deep_copy(self, temp_dir):
        """Test restore() deep copies metadata to prevent mutation."""
        extensions_dir = temp_dir / "extensions"
        extensions_dir.mkdir()
        registry = ExtensionRegistry(extensions_dir)
        original_metadata = {
            "version": "1.0.0",
            "nested": {"key": "original"},
        }
        registry.restore("test-ext", original_metadata)
        # Mutate the original metadata after restore
        original_metadata["version"] = "MUTATED"
        original_metadata["nested"]["key"] = "MUTATED"
        # Registry should have the original values
        stored = registry.get("test-ext")
        assert stored["version"] == "1.0.0"
        assert stored["nested"]["key"] == "original"
    def test_get_returns_deep_copy(self, temp_dir):
        """Test that get() returns deep copies for nested structures."""
        extensions_dir = temp_dir / "extensions"
@@ -439,6 +481,26 @@ class TestExtensionRegistry:
        internal = registry.data["extensions"]["test-ext"]
        assert internal["registered_commands"] == {"claude": ["cmd1"]}
    def test_get_returns_none_for_corrupted_entry(self, temp_dir):
        """Test that get() returns None for corrupted (non-dict) entries."""
        extensions_dir = temp_dir / "extensions"
        extensions_dir.mkdir()
        registry = ExtensionRegistry(extensions_dir)
        # Directly corrupt the registry with non-dict entries
        registry.data["extensions"]["corrupted-string"] = "not a dict"
        registry.data["extensions"]["corrupted-list"] = ["not", "a", "dict"]
        registry.data["extensions"]["corrupted-int"] = 42
        registry._save()
        # All corrupted entries should return None
        assert registry.get("corrupted-string") is None
        assert registry.get("corrupted-list") is None
        assert registry.get("corrupted-int") is None
        # Non-existent should also return None
        assert registry.get("nonexistent") is None
    def test_list_returns_deep_copy(self, temp_dir):
        """Test that list() returns deep copies for nested structures."""
        extensions_dir = temp_dir / "extensions"
@@ -458,6 +520,20 @@ class TestExtensionRegistry:
        internal = registry.data["extensions"]["test-ext"]
        assert internal["registered_commands"] == {"claude": ["cmd1"]}
    def test_list_returns_empty_dict_for_corrupted_registry(self, temp_dir):
        """Test that list() returns empty dict when extensions is not a dict."""
        extensions_dir = temp_dir / "extensions"
        extensions_dir.mkdir()
        registry = ExtensionRegistry(extensions_dir)
        # Corrupt the registry - extensions is a list instead of dict
        registry.data["extensions"] = ["not", "a", "dict"]
        registry._save()
        # list() should return empty dict, not crash
        result = registry.list()
        assert result == {}
 # ===== ExtensionManager Tests =====
@@ -593,6 +669,15 @@ class TestCommandRegistrar:
        assert "codex" in CommandRegistrar.AGENT_CONFIGS
        assert CommandRegistrar.AGENT_CONFIGS["codex"]["dir"] == ".codex/prompts"
    def test_pi_agent_config_present(self):
        """Pi should be mapped to .pi/prompts."""
        assert "pi" in CommandRegistrar.AGENT_CONFIGS
        cfg = CommandRegistrar.AGENT_CONFIGS["pi"]
        assert cfg["dir"] == ".pi/prompts"
        assert cfg["format"] == "markdown"
        assert cfg["args"] == "$ARGUMENTS"
        assert cfg["extension"] == ".md"
    def test_qwen_agent_config_is_markdown(self):
        """Qwen should use Markdown format with $ARGUMENTS (not TOML)."""
        assert "qwen" in CommandRegistrar.AGENT_CONFIGS
@@ -2500,6 +2585,40 @@ class TestExtensionPriority:
        assert [item[0] for item in result] == ["ext-high", "ext-invalid"]
        assert result[1][1]["priority"] == 10
    def test_list_by_priority_excludes_disabled(self, temp_dir):
        """Test that list_by_priority excludes disabled extensions by default."""
        extensions_dir = temp_dir / "extensions"
        extensions_dir.mkdir()
        registry = ExtensionRegistry(extensions_dir)
        registry.add("ext-enabled", {"version": "1.0.0", "enabled": True, "priority": 5})
        registry.add("ext-disabled", {"version": "1.0.0", "enabled": False, "priority": 1})
        registry.add("ext-default", {"version": "1.0.0", "priority": 10})  # no enabled field = True
        # Default: exclude disabled
        by_priority = registry.list_by_priority()
        ext_ids = [p[0] for p in by_priority]
        assert "ext-enabled" in ext_ids
        assert "ext-default" in ext_ids
        assert "ext-disabled" not in ext_ids
    def test_list_by_priority_includes_disabled_when_requested(self, temp_dir):
        """Test that list_by_priority includes disabled extensions when requested."""
        extensions_dir = temp_dir / "extensions"
        extensions_dir.mkdir()
        registry = ExtensionRegistry(extensions_dir)
        registry.add("ext-enabled", {"version": "1.0.0", "enabled": True, "priority": 5})
        registry.add("ext-disabled", {"version": "1.0.0", "enabled": False, "priority": 1})
        # Include disabled
        by_priority = registry.list_by_priority(include_disabled=True)
        ext_ids = [p[0] for p in by_priority]
        assert "ext-enabled" in ext_ids
        assert "ext-disabled" in ext_ids
        # Disabled ext has lower priority number, so it comes first when included
        assert ext_ids[0] == "ext-disabled"
    def test_install_with_priority(self, extension_dir, project_dir):
        """Test that install_from_directory stores priority."""
        manager = ExtensionManager(project_dir)
@@ -2541,8 +2660,8 @@ class TestExtensionPriority:
        assert updated["priority"] == 5  # Preserved
        assert updated["enabled"] is False  # Updated
-    def test_resolve_uses_unregistered_extension_dirs_when_registry_partially_corrupted(self, project_dir):
+    def test_corrupted_extension_entry_not_picked_up_as_unregistered(self, project_dir):
-        """Resolution scans unregistered extension dirs after valid registry entries."""
+        """Corrupted registry entries are still tracked and NOT picked up as unregistered."""
        extensions_dir = project_dir / ".specify" / "extensions"
        valid_dir = extensions_dir / "valid-ext" / "templates"
@@ -2555,20 +2674,21 @@ class TestExtensionPriority:
        registry = ExtensionRegistry(extensions_dir)
        registry.add("valid-ext", {"version": "1.0.0", "priority": 10})
        # Corrupt the entry - should still be tracked, not picked up as unregistered
        registry.data["extensions"]["broken-ext"] = "corrupted"
        registry._save()
        from specify_cli.presets import PresetResolver
        resolver = PresetResolver(project_dir)
        # Corrupted extension templates should NOT be resolved
        resolved = resolver.resolve("target-template")
-        sourced = resolver.resolve_with_source("target-template")
+        assert resolved is None
-        assert resolved is not None
+        # Valid extension template should still resolve
-        assert resolved.name == "target-template.md"
+        valid_resolved = resolver.resolve("other-template")
-        assert "Broken Target" in resolved.read_text()
+        assert valid_resolved is not None
-        assert sourced is not None
+        assert "Valid" in valid_resolved.read_text()
        assert sourced["source"] == "extension:broken-ext (unregistered)"
 class TestExtensionPriorityCLI:
--- a/tests/test_presets.py
+++ b/tests/test_presets.py
@@ -369,6 +369,172 @@ class TestPresetRegistry:
        registry = PresetRegistry(packs_dir)
        assert registry.get("nonexistent") is None
    def test_restore(self, temp_dir):
        """Test restore() preserves timestamps exactly."""
        packs_dir = temp_dir / "packs"
        packs_dir.mkdir()
        registry = PresetRegistry(packs_dir)
        # Create original entry with a specific timestamp
        original_metadata = {
            "version": "1.0.0",
            "source": "local",
            "installed_at": "2025-01-15T10:30:00+00:00",
            "enabled": True,
        }
        registry.restore("test-pack", original_metadata)
        # Verify exact restoration
        restored = registry.get("test-pack")
        assert restored["installed_at"] == "2025-01-15T10:30:00+00:00"
        assert restored["version"] == "1.0.0"
        assert restored["enabled"] is True
    def test_restore_rejects_none_metadata(self, temp_dir):
        """Test restore() raises ValueError for None metadata."""
        packs_dir = temp_dir / "packs"
        packs_dir.mkdir()
        registry = PresetRegistry(packs_dir)
        with pytest.raises(ValueError, match="metadata must be a dict"):
            registry.restore("test-pack", None)
    def test_restore_rejects_non_dict_metadata(self, temp_dir):
        """Test restore() raises ValueError for non-dict metadata."""
        packs_dir = temp_dir / "packs"
        packs_dir.mkdir()
        registry = PresetRegistry(packs_dir)
        with pytest.raises(ValueError, match="metadata must be a dict"):
            registry.restore("test-pack", "not-a-dict")
        with pytest.raises(ValueError, match="metadata must be a dict"):
            registry.restore("test-pack", ["list", "not", "dict"])
    def test_restore_uses_deep_copy(self, temp_dir):
        """Test restore() deep copies metadata to prevent mutation."""
        packs_dir = temp_dir / "packs"
        packs_dir.mkdir()
        registry = PresetRegistry(packs_dir)
        original_metadata = {
            "version": "1.0.0",
            "nested": {"key": "original"},
        }
        registry.restore("test-pack", original_metadata)
        # Mutate the original metadata after restore
        original_metadata["version"] = "MUTATED"
        original_metadata["nested"]["key"] = "MUTATED"
        # Registry should have the original values
        stored = registry.get("test-pack")
        assert stored["version"] == "1.0.0"
        assert stored["nested"]["key"] == "original"
    def test_get_returns_deep_copy(self, temp_dir):
        """Test that get() returns a deep copy to prevent mutation."""
        packs_dir = temp_dir / "packs"
        packs_dir.mkdir()
        registry = PresetRegistry(packs_dir)
        registry.add("test-pack", {"version": "1.0.0", "nested": {"key": "original"}})
        # Get and mutate the returned copy
        metadata = registry.get("test-pack")
        metadata["version"] = "MUTATED"
        metadata["nested"]["key"] = "MUTATED"
        # Original should be unchanged
        fresh = registry.get("test-pack")
        assert fresh["version"] == "1.0.0"
        assert fresh["nested"]["key"] == "original"
    def test_get_returns_none_for_corrupted_entry(self, temp_dir):
        """Test that get() returns None for corrupted (non-dict) entries."""
        packs_dir = temp_dir / "packs"
        packs_dir.mkdir()
        registry = PresetRegistry(packs_dir)
        # Directly corrupt the registry with non-dict entries
        registry.data["presets"]["corrupted-string"] = "not a dict"
        registry.data["presets"]["corrupted-list"] = ["not", "a", "dict"]
        registry.data["presets"]["corrupted-int"] = 42
        registry._save()
        # All corrupted entries should return None
        assert registry.get("corrupted-string") is None
        assert registry.get("corrupted-list") is None
        assert registry.get("corrupted-int") is None
        # Non-existent should also return None
        assert registry.get("nonexistent") is None
    def test_list_returns_deep_copy(self, temp_dir):
        """Test that list() returns deep copies to prevent mutation."""
        packs_dir = temp_dir / "packs"
        packs_dir.mkdir()
        registry = PresetRegistry(packs_dir)
        registry.add("test-pack", {"version": "1.0.0", "nested": {"key": "original"}})
        # Get list and mutate
        all_packs = registry.list()
        all_packs["test-pack"]["version"] = "MUTATED"
        all_packs["test-pack"]["nested"]["key"] = "MUTATED"
        # Original should be unchanged
        fresh = registry.get("test-pack")
        assert fresh["version"] == "1.0.0"
        assert fresh["nested"]["key"] == "original"
    def test_list_returns_empty_dict_for_corrupted_registry(self, temp_dir):
        """Test that list() returns empty dict when presets is not a dict."""
        packs_dir = temp_dir / "packs"
        packs_dir.mkdir()
        registry = PresetRegistry(packs_dir)
        # Corrupt the registry - presets is a list instead of dict
        registry.data["presets"] = ["not", "a", "dict"]
        registry._save()
        # list() should return empty dict, not crash
        result = registry.list()
        assert result == {}
    def test_list_by_priority_excludes_disabled(self, temp_dir):
        """Test that list_by_priority excludes disabled presets by default."""
        packs_dir = temp_dir / "packs"
        packs_dir.mkdir()
        registry = PresetRegistry(packs_dir)
        registry.add("pack-enabled", {"version": "1.0.0", "enabled": True, "priority": 5})
        registry.add("pack-disabled", {"version": "1.0.0", "enabled": False, "priority": 1})
        registry.add("pack-default", {"version": "1.0.0", "priority": 10})  # no enabled field = True
        # Default: exclude disabled
        by_priority = registry.list_by_priority()
        pack_ids = [p[0] for p in by_priority]
        assert "pack-enabled" in pack_ids
        assert "pack-default" in pack_ids
        assert "pack-disabled" not in pack_ids
    def test_list_by_priority_includes_disabled_when_requested(self, temp_dir):
        """Test that list_by_priority includes disabled presets when requested."""
        packs_dir = temp_dir / "packs"
        packs_dir.mkdir()
        registry = PresetRegistry(packs_dir)
        registry.add("pack-enabled", {"version": "1.0.0", "enabled": True, "priority": 5})
        registry.add("pack-disabled", {"version": "1.0.0", "enabled": False, "priority": 1})
        # Include disabled
        by_priority = registry.list_by_priority(include_disabled=True)
        pack_ids = [p[0] for p in by_priority]
        assert "pack-enabled" in pack_ids
        assert "pack-disabled" in pack_ids
        # Disabled pack has lower priority number, so it comes first when included
        assert pack_ids[0] == "pack-disabled"
 # ===== PresetManager Tests =====
@@ -707,6 +873,44 @@ class TestPresetResolver:
        assert result is not None
        assert "Extension Custom Template" in result.read_text()
    def test_resolve_disabled_extension_templates_skipped(self, project_dir):
        """Test that disabled extension templates are not resolved."""
        # Create extension with templates
        ext_dir = project_dir / ".specify" / "extensions" / "disabled-ext"
        ext_templates_dir = ext_dir / "templates"
        ext_templates_dir.mkdir(parents=True)
        ext_template = ext_templates_dir / "disabled-template.md"
        ext_template.write_text("# Disabled Extension Template\n")
        # Register extension as disabled
        extensions_dir = project_dir / ".specify" / "extensions"
        ext_registry = ExtensionRegistry(extensions_dir)
        ext_registry.add("disabled-ext", {"version": "1.0.0", "priority": 1, "enabled": False})
        # Template should NOT be resolved because extension is disabled
        resolver = PresetResolver(project_dir)
        result = resolver.resolve("disabled-template")
        assert result is None, "Disabled extension template should not be resolved"
    def test_resolve_disabled_extension_not_picked_up_as_unregistered(self, project_dir):
        """Test that disabled extensions are not picked up via unregistered dir scan."""
        # Create extension directory with templates
        ext_dir = project_dir / ".specify" / "extensions" / "test-disabled-ext"
        ext_templates_dir = ext_dir / "templates"
        ext_templates_dir.mkdir(parents=True)
        ext_template = ext_templates_dir / "unique-disabled-template.md"
        ext_template.write_text("# Should Not Resolve\n")
        # Register the extension but disable it
        extensions_dir = project_dir / ".specify" / "extensions"
        ext_registry = ExtensionRegistry(extensions_dir)
        ext_registry.add("test-disabled-ext", {"version": "1.0.0", "enabled": False})
        # Verify the template is NOT resolved (even though the directory exists)
        resolver = PresetResolver(project_dir)
        result = resolver.resolve("unique-disabled-template")
        assert result is None, "Disabled extension should not be picked up as unregistered"
    def test_resolve_pack_over_extension(self, project_dir, pack_dir, temp_dir, valid_pack_data):
        """Test that pack templates take priority over extension templates."""
        # Create extension with templates
@@ -2001,3 +2205,189 @@ class TestPresetPriorityBackwardsCompatibility:
            "legacy-pack",
            "low-priority-pack",
        ]
 class TestPresetEnableDisable:
    """Test preset enable/disable CLI commands."""
    def test_disable_preset(self, project_dir, pack_dir):
        """Test disable command sets enabled=False."""
        from typer.testing import CliRunner
        from unittest.mock import patch
        from specify_cli import app
        runner = CliRunner()
        # Install preset
        manager = PresetManager(project_dir)
        manager.install_from_directory(pack_dir, "0.1.5")
        # Verify initially enabled
        assert manager.registry.get("test-pack").get("enabled", True) is True
        with patch.object(Path, "cwd", return_value=project_dir):
            result = runner.invoke(app, ["preset", "disable", "test-pack"])
        assert result.exit_code == 0, result.output
        assert "disabled" in result.output.lower()
        # Reload registry to see updated value
        manager2 = PresetManager(project_dir)
        assert manager2.registry.get("test-pack")["enabled"] is False
    def test_enable_preset(self, project_dir, pack_dir):
        """Test enable command sets enabled=True."""
        from typer.testing import CliRunner
        from unittest.mock import patch
        from specify_cli import app
        runner = CliRunner()
        # Install preset and disable it
        manager = PresetManager(project_dir)
        manager.install_from_directory(pack_dir, "0.1.5")
        manager.registry.update("test-pack", {"enabled": False})
        # Verify disabled
        assert manager.registry.get("test-pack")["enabled"] is False
        with patch.object(Path, "cwd", return_value=project_dir):
            result = runner.invoke(app, ["preset", "enable", "test-pack"])
        assert result.exit_code == 0, result.output
        assert "enabled" in result.output.lower()
        # Reload registry to see updated value
        manager2 = PresetManager(project_dir)
        assert manager2.registry.get("test-pack")["enabled"] is True
    def test_disable_already_disabled(self, project_dir, pack_dir):
        """Test disable on already disabled preset shows warning."""
        from typer.testing import CliRunner
        from unittest.mock import patch
        from specify_cli import app
        runner = CliRunner()
        # Install preset and disable it
        manager = PresetManager(project_dir)
        manager.install_from_directory(pack_dir, "0.1.5")
        manager.registry.update("test-pack", {"enabled": False})
        with patch.object(Path, "cwd", return_value=project_dir):
            result = runner.invoke(app, ["preset", "disable", "test-pack"])
        assert result.exit_code == 0, result.output
        assert "already disabled" in result.output.lower()
    def test_enable_already_enabled(self, project_dir, pack_dir):
        """Test enable on already enabled preset shows warning."""
        from typer.testing import CliRunner
        from unittest.mock import patch
        from specify_cli import app
        runner = CliRunner()
        # Install preset (enabled by default)
        manager = PresetManager(project_dir)
        manager.install_from_directory(pack_dir, "0.1.5")
        with patch.object(Path, "cwd", return_value=project_dir):
            result = runner.invoke(app, ["preset", "enable", "test-pack"])
        assert result.exit_code == 0, result.output
        assert "already enabled" in result.output.lower()
    def test_disable_not_installed(self, project_dir):
        """Test disable fails for non-installed preset."""
        from typer.testing import CliRunner
        from unittest.mock import patch
        from specify_cli import app
        runner = CliRunner()
        with patch.object(Path, "cwd", return_value=project_dir):
            result = runner.invoke(app, ["preset", "disable", "nonexistent"])
        assert result.exit_code == 1, result.output
        assert "not installed" in result.output.lower()
    def test_enable_not_installed(self, project_dir):
        """Test enable fails for non-installed preset."""
        from typer.testing import CliRunner
        from unittest.mock import patch
        from specify_cli import app
        runner = CliRunner()
        with patch.object(Path, "cwd", return_value=project_dir):
            result = runner.invoke(app, ["preset", "enable", "nonexistent"])
        assert result.exit_code == 1, result.output
        assert "not installed" in result.output.lower()
    def test_disabled_preset_excluded_from_resolution(self, project_dir, pack_dir):
        """Test that disabled presets are excluded from template resolution."""
        # Install preset with a template
        manager = PresetManager(project_dir)
        manager.install_from_directory(pack_dir, "0.1.5")
        # Create a template in the preset directory
        preset_template = project_dir / ".specify" / "presets" / "test-pack" / "templates" / "test-template.md"
        preset_template.parent.mkdir(parents=True, exist_ok=True)
        preset_template.write_text("# Template from test-pack")
        resolver = PresetResolver(project_dir)
        # Template should be found when enabled
        result = resolver.resolve("test-template", "template")
        assert result is not None
        assert "test-pack" in str(result)
        # Disable the preset
        manager.registry.update("test-pack", {"enabled": False})
        # Template should NOT be found when disabled
        resolver2 = PresetResolver(project_dir)
        result2 = resolver2.resolve("test-template", "template")
        assert result2 is None
    def test_enable_corrupted_registry_entry(self, project_dir, pack_dir):
        """Test enable fails gracefully for corrupted registry entry."""
        from typer.testing import CliRunner
        from unittest.mock import patch
        from specify_cli import app
        runner = CliRunner()
        # Install preset then corrupt the registry entry
        manager = PresetManager(project_dir)
        manager.install_from_directory(pack_dir, "0.1.5")
        manager.registry.data["presets"]["test-pack"] = "corrupted-string"
        manager.registry._save()
        with patch.object(Path, "cwd", return_value=project_dir):
            result = runner.invoke(app, ["preset", "enable", "test-pack"])
        assert result.exit_code == 1
        assert "corrupted state" in result.output.lower()
    def test_disable_corrupted_registry_entry(self, project_dir, pack_dir):
        """Test disable fails gracefully for corrupted registry entry."""
        from typer.testing import CliRunner
        from unittest.mock import patch
        from specify_cli import app
        runner = CliRunner()
        # Install preset then corrupt the registry entry
        manager = PresetManager(project_dir)
        manager.install_from_directory(pack_dir, "0.1.5")
        manager.registry.data["presets"]["test-pack"] = "corrupted-string"
        manager.registry._save()
        with patch.object(Path, "cwd", return_value=project_dir):
            result = runner.invoke(app, ["preset", "disable", "test-pack"])
        assert result.exit_code == 1
        assert "corrupted state" in result.output.lower()
Author	SHA1	Message	Date
github-actions[bot]	77c88ae211	chore: bump version to 0.3.2	2026-03-19 13:24:09 +00:00
Li-Xian Chen	2f25e2d575	Add conduct extension to community catalog (#1908 ) - Extension ID: conduct - Version: 1.0.0 - Author: twbrandon7 - Description: Executes a single spec-kit phase via sub-agent delegation to reduce context pollution.	2026-03-19 08:12:29 -05:00
davesharpe13	7484eb521a	feat(extensions): add verify-tasks extension to community catalog (#1871 ) * feat(extensions): add verify-tasks extension to community catalog - Extension ID: verify-tasks - Version: 1.0.0 - Detects phantom completions: tasks marked [X] in tasks.md with no real implementation Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> * Replace email with name in verify-tasks catalog entry Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> --------- Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>	2026-03-19 08:11:31 -05:00
Michal Bachorik	2bf655e261	feat(presets): add enable/disable toggle and update semantics (#1891 ) * feat(presets): add enable/disable toggle and update semantics Add preset enable/disable CLI commands and update semantics to match the extension system capabilities. Changes: - Add `preset enable` and `preset disable` CLI commands - Add `restore()` method to PresetRegistry for rollback scenarios - Update `get()` and `list()` to return deep copies (prevents mutation) - Update `list_by_priority()` to filter disabled presets by default - Add input validation to `restore()` for defensive programming - Add 16 new tests covering all functionality and edge cases Closes #1851 Closes #1852 Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * fix: address PR review - deep copy and error message accuracy - Fix error message in restore() to match actual validation ("dict" not "non-empty dict") - Use copy.deepcopy() in restore() to prevent caller mutation - Apply same fixes to ExtensionRegistry for parity - Add /defensive-check command for pre-PR validation - Add tests for restore() validation and deep copy behavior Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * revert: remove defensive-check command from PR * fix: address PR review - clarify messaging and add parity - Add note to enable/disable output clarifying commands/skills remain active - Add include_disabled parameter to ExtensionRegistry.list_by_priority for parity - Add tests for extension disabled filtering Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * fix: address PR review - disabled extension resolution and corrupted entries - Fix _get_all_extensions_by_priority to use include_disabled=True for tracking registered IDs, preventing disabled extensions from being picked up as unregistered directories - Add corrupted entry handling to get() - returns None for non-dict entries - Add integration tests for disabled extension template resolution - Add tests for get() corrupted entry handling in both registries Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * fix: handle corrupted registry in list() methods - Add defensive handling to list() when presets/extensions is not a dict - Return empty dict instead of crashing on corrupted registry - Apply same fix to both PresetRegistry and ExtensionRegistry for parity - Add tests for corrupted registry handling Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * fix: validate top-level registry structure in get() and restore() - get() now validates self.data["presets/extensions"] is a dict before accessing - restore() ensures presets/extensions dict exists before writing - Prevents crashes when registry JSON is parseable but has corrupted structure - Applied same fixes to both PresetRegistry and ExtensionRegistry for parity Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * fix: validate root-level JSON structure in _load() and is_installed() - _load() now validates json.load() result is a dict before returning - is_installed() validates presets/extensions is a dict before checking membership - Prevents crashes when registry file is valid JSON but wrong type (e.g., array) - Applied same fixes to both registries for parity Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * fix: normalize presets/extensions field in _load() - _load() now normalizes the presets/extensions field to {} if not a dict - Makes corrupted registries recoverable for add/update/remove operations - Applied same fix to both registries for parity Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * fix: use raw registry keys to track corrupted extensions - Use registry.list().keys() instead of list_by_priority() for tracking - Corrupted entries are now treated as tracked, not picked up as unregistered - Tighten test assertion for disabled preset resolution - Update test to match new expected behavior for corrupted entries Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * fix: handle None metadata in ExtensionManager.remove() - Add defensive check for corrupted metadata in remove() - Match existing pattern in PresetManager.remove() Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * fix: add keys() method and filter corrupted entries in list() - Add lightweight keys() method that returns IDs without deep copy - Update list() to filter out non-dict entries (match type contract) - Use keys() instead of list().keys() for performance - Fix comment to reflect actual behavior Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * fix: address defensive-check findings - deep copy, corruption guards, parity - Extension enable/disable: use delta pattern matching presets - add(): use copy.deepcopy(metadata) in both registries - remove(): guard outer field for corruption in both registries - update(): guard outer field for corruption in both registries Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> * fix: deep copy updates in update() to prevent caller mutation Both PresetRegistry.update() and ExtensionRegistry.update() now deep copy the input updates/metadata dict to prevent callers from mutating nested objects after the call. Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com> --------- Co-authored-by: iamaeroplane <michal.bachorik@gmail.com> Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>	2026-03-19 07:48:48 -05:00
fuyongde	f6794685b6	feat: add iFlow CLI support (#1875 ) Add `iflow` as a supported AI agent (the key users pass to --ai) across all relevant configuration files, release scripts, agent context scripts, and README. Includes consistency tests following the same pattern as kimi/tabnine additions. - README: describe `check` generically (git + all AGENT_CONFIG CLI agents) - README: describe `--ai` with reference to AGENT_CONFIG for full list Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>	2026-03-19 06:44:22 -05:00
Matt Van Horn	333a76535b	feat(commands): wire before/after hook events into specify and plan templates (#1886 ) * feat(commands): wire before/after hook events into specify and plan templates Replicates the hook evaluation pattern from tasks.md and implement.md (introduced in PR #1702) into the specify and plan command templates. This completes the hook lifecycle across all SDD phases. Changes: - specify.md: Add before_specify/after_specify hook blocks - plan.md: Add before_plan/after_plan hook blocks - EXTENSION-API-REFERENCE.md: Document new hook events - EXTENSION-USER-GUIDE.md: List all available hook events Fixes #1788 Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * Mark before_commit/after_commit as planned in extension docs These hook events are defined in the API reference but not yet wired into any core command template. Marking them as planned rather than removing them, since the infrastructure supports them. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com> * Fix hook enablement to default true when field is absent Matches HookExecutor.get_hooks_for_event() semantics where hooks without an explicit enabled field are treated as enabled. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com> * fix(docs): mark commit hooks as planned in user guide config example The yaml config comment listed before_commit/after_commit as "Available events" but they are not yet wired into core templates. Moved them to a separate "Planned" line, consistent with the API reference. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> * fix(commands): align enabled-filtering semantics across all hook templates tasks.md and implement.md previously said "Filter to only hooks where enabled: true", which would skip hooks that omit the enabled field. Updated to match specify.md/plan.md and HookExecutor's h.get('enabled', True) behavior: filter out only hooks where enabled is explicitly false. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>	2026-03-19 06:37:03 -05:00
Matt Van Horn	6d0b84ab5b	docs(catalog): add speckit-utils to community catalog (#1896 ) * docs(catalog): add speckit-utils to community catalog Adds SDD Utilities extension (resume, doctor, validate) to the community catalog and README table. Hosted at mvanhorn/speckit-utils. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com> * Bump catalog updated_at to current date Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com> --------- Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com> Co-authored-by: Manfred Riem <15701806+mnriem@users.noreply.github.com>	2026-03-18 14:27:27 -05:00
Manfred Riem	497b5885e1	docs: Add Extensions & Presets section to README (#1898 ) * docs: add Extensions & Presets section to README Add a new 'Making Spec Kit Your Own: Extensions & Presets' section that covers: - Layering diagram (Mermaid) showing resolution order - Extensions: what they are, when to use, examples - Presets: what they are, when to use, examples - When-to-use-which comparison table - Links to extensions/README.md and presets/README.md * docs: clarify project-local overrides in layering diagram Address review feedback: explain the project-local overrides layer shown in the diagram, and adjust the intro to acknowledge it as a third customization mechanism alongside extensions and presets. * docs: Clarify template vs command resolution in README - Separate template resolution (top-down, first-match-wins stack) from command registration (written directly into agent directories) - Update Mermaid diagram paths to use <preset-id> and <ext-id> placeholders consistent with existing documentation Addresses PR review feedback on #1898. * docs: Clarify install-time vs runtime resolution for commands and templates - README: label templates as runtime-resolved (stack walk) and commands as install-time (copied into agent directories, last-installed wins) - presets/README: add runtime note to template resolution, contrast with install-time command registration * docs: Address review — fix template copy wording, tighten command override description - presets/README: clarify that preset files are copied at install but template resolution still walks the stack at runtime - README: describe priority-based command resolution and automatic restoration on removal instead of vague 'replacing whatever was there'	2026-03-18 14:21:20 -05:00
Ricardo Accioly	33c83a6162	chore: update DocGuard extension to v0.9.11 (#1899 ) Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>	2026-03-18 14:07:44 -05:00
LADISLAV BIHARI	f97c8e95a6	Update cognitive-squad catalog entry — Triadic Model, full lifecycle (#1884 ) Updated description to version-independent wording: "Multi-agent cognitive system with Triadic Model: understanding, internalization, application — with quality gates, backpropagation verification, and self-healing" Changes: - description: version-independent (no counts) - provides.commands: 7 → 10 - tags: pre-code,analysis → full-lifecycle,verification - updated_at: bumped to 2026-03-18 Co-authored-by: Ladislav Bihari <ladislav.bihari@statsperform.com> Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>	2026-03-18 11:50:36 -05:00
Vianca M.	cfd99ad499	feat: register spec-kit-iterate extension (#1887 ) * feat: register spec-kit-iterate extension * fix: copilot review * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> --------- Co-authored-by: Manfred Riem <15701806+mnriem@users.noreply.github.com> Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>	2026-03-18 08:50:19 -05:00
Matt Van Horn	96712e1cdf	fix(scripts): add explicit positional binding to PowerShell create-new-feature params (#1885 ) The $Number (Int32) parameter was implicitly receiving positional arguments intended for $FeatureDescription, causing a ParameterBindingArgumentTransformationException when AI agents called the script with positional strings. Add [Parameter(Position = 0)] to $FeatureDescription so it binds first, and mark $Number with [Parameter()] (no Position) so it only binds by name (-Number N). Fixes #1879 Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>	2026-03-18 08:00:16 -05:00
Pierluigi Lenoci	2e55bdd3f2	fix(scripts): encode residual JSON control chars as \uXXXX instead of stripping (#1872 ) * fix(scripts): encode residual control chars as \uXXXX instead of stripping json_escape() was silently deleting control characters (U+0000-U+001F) that were not individually handled (\n, \t, \r, \b, \f). Per RFC 8259, these must be encoded as \uXXXX sequences to preserve data integrity. Replace the tr -d strip with a char-by-char loop that emits proper \uXXXX escapes for any remaining control characters. * fix(scripts): address Copilot review on json_escape control char loop - Set LC_ALL=C for the entire loop (not just printf) so that ${#s} and ${s:$i:1} operate on bytes deterministically across locales - Fix comment: U+0000 (NUL) cannot exist in bash strings, range is U+0001-U+001F; adjust code guard accordingly (code >= 1) - Emit directly to stdout instead of accumulating in a variable, avoiding quadratic string concatenation on longer inputs * perf(scripts): use printf -v to avoid subshell in json_escape loop Replace code=$(printf ...) with printf -v code to assign the character code without spawning a subshell on every byte, reducing overhead for longer inputs.	2026-03-18 07:58:34 -05:00
Ricardo Accioly	eecb723663	chore: update DocGuard extension to v0.9.10 (#1890 ) Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>	2026-03-18 07:43:42 -05:00
Greazly	1a21bdef01	Feature/spec kit add pi coding agent pullrequest (#1853 ) * feat(ai): add native support for Pi coding agent by pi+gpt 5.4 * docs(pi): document MCP limitations for Pi agent * fix: unitended kimi agent mention added to update-agent-context.ps1 * fix: address reviewer feedback * Apply suggestions from code review Changes in AGENTS.md weren't part of my PR, but the Copilot feedback seems to be correct is correct. I've doublechecked it with contents of test_agent_config_consistency.py and create-release-packages scripts Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>	2026-03-17 14:50:18 -05:00
Vianca M.	f21eb71990	feat: register spec-kit-learn extension (#1883 ) * feat: register spec-kit-learn extension * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> resolve copilot review Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>	2026-03-17 13:31:00 -05:00
Manfred Riem	b471b5e6f3	chore: bump version to 0.3.1 (#1880 ) * chore: bump version to 0.3.1 * fix: correct 0.3.1 CHANGELOG.md entries (#1882) * Initial plan * fix: correct 0.3.1 CHANGELOG.md entries - fix truncated title and remove duplicates Co-authored-by: mnriem <15701806+mnriem@users.noreply.github.com> --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: mnriem <15701806+mnriem@users.noreply.github.com> --------- Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Copilot <198982749+Copilot@users.noreply.github.com>	2026-03-17 12:41:29 -05:00