Add Cleanup Extension to catalog (#1617)

**Repository**: https://github.com/dsrednicki/spec-kit-cleanup
**Version**: 1.0.0
**License**: MIT
**Author**: @dsrednicki

Adds catalog entry for the Cleanup Extension - a post-implementation
quality gate that fixes small issues (scout rule), creates tasks for
medium issues, and generates analysis for large issues.

.github/CODEOWNERS

@@ -1,3 +1,3 @@
 # Global code owner
-* @localden
+* @mnriem
 

AGENTS.md

@@ -66,6 +66,7 @@ AGENT_CONFIG = {
     "new-agent-cli": {  # Use the ACTUAL CLI tool name (what users type in terminal)
         "name": "New Agent Display Name",
         "folder": ".newagent/",  # Directory for agent files
+        "commands_subdir": "commands",  # Subdirectory name for command files (default: "commands")
         "install_url": "https://example.com/install",  # URL for installation docs (or None if IDE-based)
         "requires_cli": True,  # True if CLI tool required, False for IDE-based agents
     },
@@ -83,6 +84,10 @@ This eliminates the need for special-case mappings throughout the codebase.
 
 - `name`: Human-readable display name shown to users
 - `folder`: Directory where agent-specific files are stored (relative to project root)
+- `commands_subdir`: Subdirectory name within the agent folder where command/prompt files are stored (default: `"commands"`)
+  - Most agents use `"commands"` (e.g., `.claude/commands/`)
+  - Some agents use alternative names: `"agents"` (copilot), `"workflows"` (windsurf, kilocode, agy), `"prompts"` (codex, q), `"command"` (opencode - singular)
+  - This field enables `--ai-skills` to locate command templates correctly for skill generation
 - `install_url`: Installation documentation URL (set to `None` for IDE-based agents)
 - `requires_cli`: Whether the agent requires a CLI tool check during initialization
 

CHANGELOG.md

@@ -2,18 +2,38 @@
 
 <!-- markdownlint-disable MD024 -->
 
-All notable changes to the Specify CLI and templates are documented here.
+Recent changes to the Specify CLI and templates are documented here.
 
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## [0.1.4] - Unreleased
+## [0.1.6] - 2026-02-23
+
+### Fixed
+
+- **Parameter Ordering Issues (#1641)**: Fixed CLI parameter parsing issue where option flags were incorrectly consumed as values for preceding options
+  - Added validation to detect when `--ai` or `--ai-commands-dir` incorrectly consume following flags like `--here` or `--ai-skills`
+  - Now provides clear error messages: "Invalid value for --ai: '--here'"
+  - Includes helpful hints suggesting proper usage and listing available agents
+  - Commands like `specify init --ai-skills --ai --here` now fail with actionable feedback instead of confusing "Must specify project name" errors
+  - Added comprehensive test suite (5 new tests) to prevent regressions
+
+## [0.1.5] - 2026-02-21
+
+### Fixed
+
+- **AI Skills Installation Bug (#1658)**: Fixed `--ai-skills` flag not generating skill files for GitHub Copilot and other agents with non-standard command directory structures
+  - Added `commands_subdir` field to `AGENT_CONFIG` to explicitly specify the subdirectory name for each agent
+  - Affected agents now work correctly: copilot (`.github/agents/`), opencode (`.opencode/command/`), windsurf (`.windsurf/workflows/`), codex (`.codex/prompts/`), kilocode (`.kilocode/workflows/`), q (`.amazonq/prompts/`), and agy (`.agent/workflows/`)
+  - The `install_ai_skills()` function now uses the correct path for all agents instead of assuming `commands/` for everyone
+
+## [0.1.4] - 2026-02-20
 
 ### Fixed
 
 - **Qoder CLI detection**: Renamed `AGENT_CONFIG` key from `"qoder"` to `"qodercli"` to match the actual executable name, fixing `specify check` and `specify init --ai` detection failures
 
-## [0.1.3] - Unreleased
+## [0.1.3] - 2026-02-20
 
 ### Added
 
@@ -60,7 +80,3 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 ## [0.0.94] - 2026-02-11
 
 - Add stale workflow for 180-day inactive issues and PRs (#1594)
-
-## [0.0.93] - 2026-02-10
-
-- Add modular extension system (#1551)

docs/quickstart.md

@@ -81,6 +81,9 @@ Then, use the `/speckit.implement` slash command to execute the plan.
 /speckit.implement
 ```
 
+> [!TIP]
+> **Phased Implementation**: For complex projects, implement in phases to avoid overwhelming the agent's context. Start with core functionality, validate it works, then add features incrementally.
+
 ## Detailed Example: Building Taskify
 
 Here's a complete example of building a team productivity platform:
@@ -135,7 +138,15 @@ Be specific about your tech stack and technical requirements:
 /speckit.plan We are going to generate this using .NET Aspire, using Postgres as the database. The frontend should use Blazor server with drag-and-drop task boards, real-time updates. There should be a REST API created with a projects API, tasks API, and a notifications API.
 ```
 
-### Step 6: Validate and Implement
+### Step 6: Define Tasks
+
+Generate an actionable task list using the `/speckit.tasks` command:
+
+```bash
+/speckit.tasks
+```
+
+### Step 7: Validate and Implement
 
 Have your AI agent audit the implementation plan using `/speckit.analyze`:
 
@@ -149,6 +160,9 @@ Finally, implement the solution:
 /speckit.implement
 ```
 
+> [!TIP]
+> **Phased Implementation**: For large projects like Taskify, consider implementing in phases (e.g., Phase 1: Basic project/task structure, Phase 2: Kanban functionality, Phase 3: Comments and assignments). This prevents context saturation and allows for validation at each stage.
+
 ## Key Principles
 
 - **Be explicit** about what you're building and why

extensions/catalog.community.json

@@ -1,15 +1,41 @@
 {
   "schema_version": "1.0",
-  "updated_at": "2026-02-20T00:00:00Z",
+  "updated_at": "2026-02-22T00:00:00Z",
   "catalog_url": "https://raw.githubusercontent.com/github/spec-kit/main/extensions/catalog.community.json",
   "extensions": {
+    "cleanup": {
+      "name": "Cleanup Extension",
+      "id": "cleanup",
+      "description": "Post-implementation quality gate that reviews changes, fixes small issues (scout rule), creates tasks for medium issues, and generates analysis for large issues.",
+      "author": "dsrednicki",
+      "version": "1.0.0",
+      "download_url": "https://github.com/dsrednicki/spec-kit-cleanup/archive/refs/tags/v1.0.0.zip",
+      "repository": "https://github.com/dsrednicki/spec-kit-cleanup",
+      "homepage": "https://github.com/dsrednicki/spec-kit-cleanup",
+      "documentation": "https://github.com/dsrednicki/spec-kit-cleanup/blob/main/README.md",
+      "changelog": "https://github.com/dsrednicki/spec-kit-cleanup/blob/main/CHANGELOG.md",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.1.0"
+      },
+      "provides": {
+        "commands": 1,
+        "hooks": 1
+      },
+      "tags": ["quality", "tech-debt", "review", "cleanup", "scout-rule"],
+      "verified": false,
+      "downloads": 0,
+      "stars": 0,
+      "created_at": "2026-02-22T00:00:00Z",
+      "updated_at": "2026-02-22T00:00:00Z"
+    },
     "v-model": {
       "name": "V-Model Extension Pack",
       "id": "v-model",
       "description": "Enforces V-Model paired generation of development specs and test specs with full traceability.",
       "author": "leocamello",
-      "version": "0.2.0",
+      "version": "0.4.0",
-      "download_url": "https://github.com/leocamello/spec-kit-v-model/archive/refs/tags/v0.2.0.zip",
+      "download_url": "https://github.com/leocamello/spec-kit-v-model/archive/refs/tags/v0.4.0.zip",
       "repository": "https://github.com/leocamello/spec-kit-v-model",
       "homepage": "https://github.com/leocamello/spec-kit-v-model",
       "documentation": "https://github.com/leocamello/spec-kit-v-model/blob/main/README.md",
@@ -19,7 +45,7 @@
         "speckit_version": ">=0.1.0"
       },
       "provides": {
-        "commands": 5,
+        "commands": 9,
         "hooks": 1
       },
       "tags": ["v-model", "traceability", "testing", "compliance", "safety-critical"],
@@ -27,7 +53,7 @@
       "downloads": 0,
       "stars": 0,
       "created_at": "2026-02-20T00:00:00Z",
-      "updated_at": "2026-02-20T00:00:00Z"
+      "updated_at": "2026-02-22T00:00:00Z"
     }
   }
 }

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "specify-cli"
-version = "0.1.4"
+version = "0.1.6"
 description = "Specify CLI, part of GitHub Spec Kit. A tool to bootstrap your projects for Spec-Driven Development (SDD)."
 requires-python = ">=3.11"
 dependencies = [

src/specify_cli/__init__.py

@@ -123,119 +123,138 @@ def _format_rate_limit_error(status_code: int, headers: httpx.Headers, url: str)
     
     return "\n".join(lines)
 
-# Agent configuration with name, folder, install URL, and CLI tool requirement
+# Agent configuration with name, folder, install URL, CLI tool requirement, and commands subdirectory
 AGENT_CONFIG = {
     "copilot": {
         "name": "GitHub Copilot",
         "folder": ".github/",
+        "commands_subdir": "agents",  # Special: uses agents/ not commands/
         "install_url": None,  # IDE-based, no CLI check needed
         "requires_cli": False,
     },
     "claude": {
         "name": "Claude Code",
         "folder": ".claude/",
+        "commands_subdir": "commands",
         "install_url": "https://docs.anthropic.com/en/docs/claude-code/setup",
         "requires_cli": True,
     },
     "gemini": {
         "name": "Gemini CLI",
         "folder": ".gemini/",
+        "commands_subdir": "commands",
         "install_url": "https://github.com/google-gemini/gemini-cli",
         "requires_cli": True,
     },
     "cursor-agent": {
         "name": "Cursor",
         "folder": ".cursor/",
+        "commands_subdir": "commands",
         "install_url": None,  # IDE-based
         "requires_cli": False,
     },
     "qwen": {
         "name": "Qwen Code",
         "folder": ".qwen/",
+        "commands_subdir": "commands",
         "install_url": "https://github.com/QwenLM/qwen-code",
         "requires_cli": True,
     },
     "opencode": {
         "name": "opencode",
         "folder": ".opencode/",
+        "commands_subdir": "command",  # Special: singular 'command' not 'commands'
         "install_url": "https://opencode.ai",
         "requires_cli": True,
     },
     "codex": {
         "name": "Codex CLI",
         "folder": ".codex/",
+        "commands_subdir": "prompts",  # Special: uses prompts/ not commands/
         "install_url": "https://github.com/openai/codex",
         "requires_cli": True,
     },
     "windsurf": {
         "name": "Windsurf",
         "folder": ".windsurf/",
+        "commands_subdir": "workflows",  # Special: uses workflows/ not commands/
         "install_url": None,  # IDE-based
         "requires_cli": False,
     },
     "kilocode": {
         "name": "Kilo Code",
         "folder": ".kilocode/",
+        "commands_subdir": "workflows",  # Special: uses workflows/ not commands/
         "install_url": None,  # IDE-based
         "requires_cli": False,
     },
     "auggie": {
         "name": "Auggie CLI",
         "folder": ".augment/",
+        "commands_subdir": "commands",
         "install_url": "https://docs.augmentcode.com/cli/setup-auggie/install-auggie-cli",
         "requires_cli": True,
     },
     "codebuddy": {
         "name": "CodeBuddy",
         "folder": ".codebuddy/",
+        "commands_subdir": "commands",
         "install_url": "https://www.codebuddy.ai/cli",
         "requires_cli": True,
     },
     "qodercli": {
         "name": "Qoder CLI",
         "folder": ".qoder/",
+        "commands_subdir": "commands",
         "install_url": "https://qoder.com/cli",
         "requires_cli": True,
     },
     "roo": {
         "name": "Roo Code",
         "folder": ".roo/",
+        "commands_subdir": "commands",
         "install_url": None,  # IDE-based
         "requires_cli": False,
     },
     "q": {
         "name": "Amazon Q Developer CLI",
         "folder": ".amazonq/",
+        "commands_subdir": "prompts",  # Special: uses prompts/ not commands/
         "install_url": "https://aws.amazon.com/developer/learning/q-developer-cli/",
         "requires_cli": True,
     },
     "amp": {
         "name": "Amp",
         "folder": ".agents/",
+        "commands_subdir": "commands",
         "install_url": "https://ampcode.com/manual#install",
         "requires_cli": True,
     },
     "shai": {
         "name": "SHAI",
         "folder": ".shai/",
+        "commands_subdir": "commands",
         "install_url": "https://github.com/ovh/shai",
         "requires_cli": True,
     },
     "agy": {
         "name": "Antigravity",
         "folder": ".agent/",
+        "commands_subdir": "workflows",  # Special: uses workflows/ not commands/
         "install_url": None,  # IDE-based
         "requires_cli": False,
     },
     "bob": {
         "name": "IBM Bob",
         "folder": ".bob/",
+        "commands_subdir": "commands",
         "install_url": None,  # IDE-based
         "requires_cli": False,
     },
     "generic": {
         "name": "Generic (bring your own agent)",
         "folder": None,  # Set dynamically via --ai-commands-dir
+        "commands_subdir": "commands",
         "install_url": None,
         "requires_cli": False,
     },
@@ -1056,10 +1075,11 @@ def install_ai_skills(project_path: Path, selected_ai: str, tracker: StepTracker
     # download_and_extract_template() already placed the .md files here.
     agent_config = AGENT_CONFIG.get(selected_ai, {})
     agent_folder = agent_config.get("folder", "")
+    commands_subdir = agent_config.get("commands_subdir", "commands")
     if agent_folder:
-        templates_dir = project_path / agent_folder.rstrip("/") / "commands"
+        templates_dir = project_path / agent_folder.rstrip("/") / commands_subdir
     else:
-        templates_dir = project_path / "commands"
+        templates_dir = project_path / commands_subdir
 
     if not templates_dir.exists() or not any(templates_dir.glob("*.md")):
         # Fallback: try the repo-relative path (for running from source checkout)
@@ -1236,6 +1256,20 @@ def init(
 
     show_banner()
 
+    # Detect when option values are likely misinterpreted flags (parameter ordering issue)
+    if ai_assistant and ai_assistant.startswith("--"):
+        console.print(f"[red]Error:[/red] Invalid value for --ai: '{ai_assistant}'")
+        console.print("[yellow]Hint:[/yellow] Did you forget to provide a value for --ai?")
+        console.print("[yellow]Example:[/yellow] specify init --ai claude --here")
+        console.print(f"[yellow]Available agents:[/yellow] {', '.join(AGENT_CONFIG.keys())}")
+        raise typer.Exit(1)
+    
+    if ai_commands_dir and ai_commands_dir.startswith("--"):
+        console.print(f"[red]Error:[/red] Invalid value for --ai-commands-dir: '{ai_commands_dir}'")
+        console.print("[yellow]Hint:[/yellow] Did you forget to provide a value for --ai-commands-dir?")
+        console.print("[yellow]Example:[/yellow] specify init --ai generic --ai-commands-dir .myagent/commands/")
+        raise typer.Exit(1)
+
     if project_name == ".":
         here = True
         project_name = None  # Clear project_name to use existing validation logic

tests/test_ai_skills.py

@@ -630,3 +630,65 @@ class TestCliValidation:
         plain = re.sub(r'\x1b\[[0-9;]*m', '', result.output)
         assert "--ai-skills" in plain
         assert "agent skills" in plain.lower()
+
+
+class TestParameterOrderingIssue:
+    """Test fix for GitHub issue #1641: parameter ordering issues."""
+
+    def test_ai_flag_consuming_here_flag(self):
+        """--ai without value should not consume --here flag (issue #1641)."""
+        from typer.testing import CliRunner
+
+        runner = CliRunner()
+        # This used to fail with "Must specify project name" because --here was consumed by --ai
+        result = runner.invoke(app, ["init", "--ai-skills", "--ai", "--here"])
+
+        assert result.exit_code == 1
+        assert "Invalid value for --ai" in result.output
+        assert "--here" in result.output  # Should mention the invalid value
+
+    def test_ai_flag_consuming_ai_skills_flag(self):
+        """--ai without value should not consume --ai-skills flag."""
+        from typer.testing import CliRunner
+
+        runner = CliRunner()
+        # This should fail with helpful error about missing --ai value
+        result = runner.invoke(app, ["init", "--here", "--ai", "--ai-skills"])
+
+        assert result.exit_code == 1
+        assert "Invalid value for --ai" in result.output
+        assert "--ai-skills" in result.output  # Should mention the invalid value
+
+    def test_error_message_provides_hint(self):
+        """Error message should provide helpful hint about missing value."""
+        from typer.testing import CliRunner
+
+        runner = CliRunner()
+        result = runner.invoke(app, ["init", "--ai", "--here"])
+
+        assert result.exit_code == 1
+        assert "Hint:" in result.output or "hint" in result.output.lower()
+        assert "forget to provide a value" in result.output.lower()
+
+    def test_error_message_lists_available_agents(self):
+        """Error message should list available agents."""
+        from typer.testing import CliRunner
+
+        runner = CliRunner()
+        result = runner.invoke(app, ["init", "--ai", "--here"])
+
+        assert result.exit_code == 1
+        # Should mention some known agents
+        output_lower = result.output.lower()
+        assert any(agent in output_lower for agent in ["claude", "copilot", "gemini"])
+
+    def test_ai_commands_dir_consuming_flag(self):
+        """--ai-commands-dir without value should not consume next flag."""
+        from typer.testing import CliRunner
+
+        runner = CliRunner()
+        result = runner.invoke(app, ["init", "myproject", "--ai", "generic", "--ai-commands-dir", "--here"])
+
+        assert result.exit_code == 1
+        assert "Invalid value for --ai-commands-dir" in result.output
+        assert "--here" in result.output