- AgentBootstrap._scaffold_project() calls scaffold_from_core_pack,
snapshots before/after, returns all new files
- finalize_setup() filters agent_files to only track files under the
agent's own directory tree (shared .specify/ files not tracked)
- All 25 bootstrap setup() methods call _scaffold_project() and return
the actual file list instead of []
- --agent init flow routes through setup() for scaffolding instead of
calling scaffold_from_core_pack directly
- 100 new tests (TestSetupReturnsFiles): verify every agent's setup()
returns non-empty, existing, absolute paths including agent-dir files
- Parity tests use CliRunner to invoke the real init command
- finalize_setup bug fix: skills-migrated agents (agy) now have their
skills directory scanned correctly
- 1262 tests pass (452 in test_agent_pack.py alone)
Co-authored-by: mnriem <15701806+mnriem@users.noreply.github.com>
Agent-Logs-Url: https://github.com/github/spec-kit/sessions/054690bb-c048-41e0-b553-377d5cb36b78
- `specify init --agent claude` resolves through the pack system and
records all installed files in .specify/agent-manifest-<id>.json via
finalize_setup() after the init pipeline finishes
- --agent and --ai are mutually exclusive; --agent additionally enables
tracked teardown/switch
- init-options.json gains "agent_pack" key when --agent is used
- 4 new parity tests verify: pack resolution matches AGENT_CONFIG,
commands_dir parity, finalize_setup records pipeline-created files,
pack metadata matches CommandRegistrar configuration
Co-authored-by: mnriem <15701806+mnriem@users.noreply.github.com>
Agent-Logs-Url: https://github.com/github/spec-kit/sessions/930d8c4d-ce42-41fb-a40f-561fb1468e81
Address code review: setup() now only creates directories, while
finalize_setup() (on base class) scans the agent's commands_dir
for all files and records them. This ensures files are tracked
after the full init pipeline has written them, not before.
- Add AgentBootstrap.finalize_setup() that scans commands_dir
- Remove premature record_installed_files() from all 25 setup() methods
- agent_switch calls finalize_setup() after setup() completes
- Update test helper to match new pattern
Co-authored-by: mnriem <15701806+mnriem@users.noreply.github.com>
Agent-Logs-Url: https://github.com/github/spec-kit/sessions/779eabf6-21d5-428b-9f01-dd363df4c84a
Setup records installed files and their SHA-256 hashes in
.specify/agent-manifest-<agent_id>.json. Teardown uses the manifest
to remove only individual files (never directories). If any tracked
file was modified since installation, teardown requires --force.
- Add record_installed_files(), check_modified_files(), remove_tracked_files()
and AgentFileModifiedError to agent_pack.py
- Update all 25 bootstrap modules to use file-tracked setup/teardown
- Add --force flag to 'specify agent switch'
- Add 11 new tests for file tracking (record, check, remove, force,
directory preservation, deleted-file handling, manifest structure)
Co-authored-by: mnriem <15701806+mnriem@users.noreply.github.com>
Agent-Logs-Url: https://github.com/github/spec-kit/sessions/779eabf6-21d5-428b-9f01-dd363df4c84a
- Copilot: only remove .github/agents/ (preserves workflows, templates)
- Tabnine: only remove .tabnine/agent/ (preserves other config)
- Amp/Codex: only remove respective subdirs (commands/skills)
to avoid deleting each other's files in shared .agents/ dir
- Tests: use flexible assertions instead of hardcoded >= 25 counts
Co-authored-by: mnriem <15701806+mnriem@users.noreply.github.com>
Agent-Logs-Url: https://github.com/github/spec-kit/sessions/ef8b4682-7f1a-4b04-a112-df0878236b6b
