diff --git a/src/specify_cli/agents.py b/src/specify_cli/agents.py
index 5054cb7d..9927daee 100644
--- a/src/specify_cli/agents.py
+++ b/src/specify_cli/agents.py
@@ -71,19 +71,19 @@ class CommandRegistrar:
             "extension": ".md"
         },
         "kilocode": {
-            "dir": ".kilocode/rules",
+            "dir": ".kilocode/workflows",
             "format": "markdown",
             "args": "$ARGUMENTS",
             "extension": ".md"
         },
         "auggie": {
-            "dir": ".augment/rules",
+            "dir": ".augment/commands",
             "format": "markdown",
             "args": "$ARGUMENTS",
             "extension": ".md"
         },
         "roo": {
-            "dir": ".roo/rules",
+            "dir": ".roo/commands",
             "format": "markdown",
             "args": "$ARGUMENTS",
             "extension": ".md"
diff --git a/src/specify_cli/presets.py b/src/specify_cli/presets.py
index 4a210227..5f2894f6 100644
--- a/src/specify_cli/presets.py
+++ b/src/specify_cli/presets.py
@@ -596,6 +596,8 @@ class PresetManager:
             short_name = skill_name
             if short_name.startswith("speckit-"):
                 short_name = short_name[len("speckit-"):]
+            elif short_name.startswith("speckit."):
+                short_name = short_name[len("speckit."):]
 
             skill_subdir = skills_dir / skill_name
             skill_file = skill_subdir / "SKILL.md"