Fix parameter ordering issues in CLI (#1669)

* chore: bump version to v0.0.6 [skip ci]

* Fix parameter ordering issues in CLI (#1641)

- Add validation to detect when option flags are consumed as values
- Provide clear error messages with helpful hints and examples
- Add 5 comprehensive tests to prevent regressions
- Update CODEOWNERS to @mnriem
- Bump version to 0.1.6 with changelog entry

Fixes: #1641

* Fix ruff linting errors: remove f-string prefix from strings without placeholders

---------

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

src/specify_cli/__init__.py

@@ -1256,6 +1256,20 @@ def init(
 
     show_banner()
 
+    # Detect when option values are likely misinterpreted flags (parameter ordering issue)
+    if ai_assistant and ai_assistant.startswith("--"):
+        console.print(f"[red]Error:[/red] Invalid value for --ai: '{ai_assistant}'")
+        console.print("[yellow]Hint:[/yellow] Did you forget to provide a value for --ai?")
+        console.print("[yellow]Example:[/yellow] specify init --ai claude --here")
+        console.print(f"[yellow]Available agents:[/yellow] {', '.join(AGENT_CONFIG.keys())}")
+        raise typer.Exit(1)
+    
+    if ai_commands_dir and ai_commands_dir.startswith("--"):
+        console.print(f"[red]Error:[/red] Invalid value for --ai-commands-dir: '{ai_commands_dir}'")
+        console.print("[yellow]Hint:[/yellow] Did you forget to provide a value for --ai-commands-dir?")
+        console.print("[yellow]Example:[/yellow] specify init --ai generic --ai-commands-dir .myagent/commands/")
+        raise typer.Exit(1)
+
     if project_name == ".":
         here = True
         project_name = None  # Clear project_name to use existing validation logic