czlonkowski 1d464e29e5 test: add Phase 4 database integration tests (partial) ...

- Add comprehensive test utilities for database testing
- Implement connection management tests for in-memory and file databases
- Add transaction tests including nested transactions and savepoints
- Test database lifecycle, error handling, and performance
- Include tests for WAL mode, connection pooling, and constraints

Part of Phase 4: Integration Testing

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..

.gitkeep

feat: implement node parser and property extractor with versioned node support

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nodes.db

test: add Phase 4 database integration tests (partial)

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nodes.db-shm

mostly working

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nodes.db-wal

mostly working

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nodes.db.backup

restore CLAUDE.md

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