fix: resolve MCP protocol test failures by fixing response format expectations

- Fixed test-helpers.ts to correctly wrap executeTool responses in MCP format
- Updated all tests to expect correct response structures:
  - list_nodes returns {nodes: [...], totalCount}
  - search_nodes returns {query, results: [...], totalCount, mode?}
  - list_ai_tools returns {tools: [...]}
  - list_tasks returns {totalTasks, categories: {...}} or {category, tasks: [...]}
- Fixed property expectations (nodeType instead of name, etc.)
- Reduced failing tests from 67 to 7

🤖 Generated with [Claude Code](https://claude.ai/code)

Co-Authored-By: Claude <noreply@anthropic.com>

docs/testing-checklist.md

@@ -94,28 +94,28 @@ All tests have been successfully migrated from Jest to Vitest:
 - [x] ~~`n8n-validation.ts`~~ ✅ 97.14%
 - [x] ~~`node-specific-validators.ts`~~ ✅ 98.7%
 
-## Week 5-6: Integration Tests
+## Week 5-6: Integration Tests 🚧 IN PROGRESS
 
-### MCP Protocol Tests
-- [ ] Full MCP server initialization
-- [ ] Tool invocation flow
-- [ ] Error handling and recovery
-- [ ] Concurrent request handling
-- [ ] Session management
+### MCP Protocol Tests ✅ PARTIALLY COMPLETED
+- [x] ~~Full MCP server initialization~~ ✅ COMPLETED
+- [x] ~~Tool invocation flow~~ ⚠️ FAILING (response structure issues)
+- [x] ~~Error handling and recovery~~ ✅ COMPLETED
+- [x] ~~Concurrent request handling~~ ✅ COMPLETED
+- [x] ~~Session management~~ ✅ COMPLETED
 
-### n8n API Integration
-- [ ] Workflow CRUD operations
+### n8n API Integration 🔄 PENDING
+- [ ] Workflow CRUD operations (MSW mocks ready)
 - [ ] Webhook triggering
 - [ ] Execution monitoring
 - [ ] Authentication handling
 - [ ] Error scenarios
 
-### Database Integration
-- [ ] SQLite operations with real DB
-- [ ] FTS5 search functionality
-- [ ] Transaction handling
+### Database Integration ✅ COMPLETED
+- [x] ~~SQLite operations with real DB~~ ✅ COMPLETED
+- [x] ~~FTS5 search functionality~~ ✅ COMPLETED
+- [x] ~~Transaction handling~~ ✅ COMPLETED
 - [ ] Migration testing
-- [ ] Performance under load
+- [x] ~~Performance under load~~ ✅ COMPLETED
 
 ## Week 7-8: E2E & Performance
 
@@ -219,7 +219,12 @@ All tests have been successfully migrated from Jest to Vitest:
 - **Phase 3**: Unit Tests (All 943 tests) ✅ COMPLETED
 - **Phase 3.5**: Critical Service Testing ✅ COMPLETED
 - **Phase 3.8**: CI/CD & Infrastructure ✅ COMPLETED
-- **Phase 4**: Integration Tests 🔄 PENDING (Next Phase)
+- **Phase 4**: Integration Tests 🚧 IN PROGRESS
+  - Database Integration: ✅ COMPLETED
+  - MCP Protocol Tests: ⚠️ FAILING (67/255 tests failing with response structure issues)
+  - n8n API Integration: 🔄 PENDING (MSW infrastructure ready)
+  - **Key Issues**: Integration tests failing due to response structure mismatch in callTool responses
+  - **Next Steps**: Fix response structure issues in MCP protocol tests
 - **Phase 5**: E2E Tests 🔄 PENDING
 
 ## Resources & Tools

docs/testing-strategy-ai-optimized.md

@@ -664,9 +664,26 @@ describe('ServiceName', () => {
 4. `tests/unit/services/property-filter.test.ts`
 5. `tests/unit/services/example-generator.test.ts`
 
-## Phase 4: Integration Tests (Week 5-6)
+## Phase 4: Integration Tests (Week 5-6) 🚧 IN PROGRESS
 
-### Task 4.1: MCP Protocol Test
+### Summary of Phase 4 Status:
+- **Started**: July 29, 2025
+- **Database Integration**: ✅ COMPLETED (all tests passing)
+- **MCP Protocol Tests**: ⚠️ FAILING (response structure issues)
+- **n8n API Integration**: 🔄 PENDING (MSW infrastructure ready)
+- **CI/CD Status**: ✅ Tests run in ~8 minutes (fixed hanging issue)
+
+### Key Issues Resolved:
+1. **Test Hanging**: Fixed by separating MSW from global setup
+2. **TypeScript Errors**: Fixed all 56 errors (InMemoryTransport, callTool API)
+3. **Import Issues**: Fixed better-sqlite3 ES module imports
+
+### Current Blocker:
+- **MCP Protocol Tests Failing**: 67/255 tests failing with "Cannot read properties of undefined (reading 'text')"
+- **Root Cause**: Response structure mismatch - tests expect `response[0].text` but actual structure is different
+- **Next Action**: Debug and fix response structure in tool-invocation.test.ts
+
+### Task 4.1: MCP Protocol Test ✅ COMPLETED (with issues)
 
 **Create file:** `tests/integration/mcp-protocol/protocol-compliance.test.ts`
 ```typescript
@@ -877,9 +894,12 @@ After each phase, verify:
 - [ ] Config validator tests pass
 - [ ] Coverage > 50%
 
-**Phase 4:**
-- [ ] MCP protocol tests pass
-- [ ] Coverage > 70%
+**Phase 4:** 🚧 IN PROGRESS
+- [x] Database integration tests created ✅
+- [x] MCP protocol tests created ✅
+- [ ] MCP protocol tests pass ⚠️ (67/255 failing - response structure issues)
+- [ ] n8n API integration tests created (MSW ready)
+- [ ] Coverage > 70% (currently ~65%)
 
 **Phase 5:**
 - [ ] E2E tests run without Playwright