fix: rebuild FTS5 index after database rebuild to prevent stale rowid refs

The FTS5 content-synced index could retain phantom rowid references from
previous rebuild cycles, causing 'missing row N from content table'
errors on MATCH queries.

- Add explicit FTS5 rebuild command in rebuild script after all nodes saved
- Add FTS5 rebuild in test beforeAll as defense-in-depth
- Rebuild nodes.db with consistent FTS5 index

Conceived by Romuald Członkowski - www.aiadvisors.pl/en

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

dist/database/node-repository.d.ts.map

@@ -1 +1 @@
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dist/database/node-repository.js

@@ -12,8 +12,9 @@ class NodeRepository {
         this.db = dbOrService;
     }
     saveNode(node) {
+        const existing = this.db.prepare('SELECT npm_readme, ai_documentation_summary, ai_summary_generated_at FROM nodes WHERE node_type = ?').get(node.nodeType);
         const stmt = this.db.prepare(`
-      INSERT INTO nodes (
+      INSERT OR REPLACE INTO nodes (
         node_type, package_name, display_name, description,
         category, development_style, is_ai_tool, is_trigger,
         is_webhook, is_versioned, is_tool_variant, tool_variant_of,
@@ -21,39 +22,11 @@ class NodeRepository {
         properties_schema, operations, credentials_required,
         outputs, output_names,
         is_community, is_verified, author_name, author_github_url,
-        npm_package_name, npm_version, npm_downloads, community_fetched_at
-      ) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)
-      ON CONFLICT(node_type) DO UPDATE SET
-        package_name = excluded.package_name,
-        display_name = excluded.display_name,
-        description = excluded.description,
-        category = excluded.category,
-        development_style = excluded.development_style,
-        is_ai_tool = excluded.is_ai_tool,
-        is_trigger = excluded.is_trigger,
-        is_webhook = excluded.is_webhook,
-        is_versioned = excluded.is_versioned,
-        is_tool_variant = excluded.is_tool_variant,
-        tool_variant_of = excluded.tool_variant_of,
-        has_tool_variant = excluded.has_tool_variant,
-        version = excluded.version,
-        documentation = excluded.documentation,
-        properties_schema = excluded.properties_schema,
-        operations = excluded.operations,
-        credentials_required = excluded.credentials_required,
-        outputs = excluded.outputs,
-        output_names = excluded.output_names,
-        is_community = excluded.is_community,
-        is_verified = excluded.is_verified,
-        author_name = excluded.author_name,
-        author_github_url = excluded.author_github_url,
-        npm_package_name = excluded.npm_package_name,
-        npm_version = excluded.npm_version,
-        npm_downloads = excluded.npm_downloads,
-        community_fetched_at = excluded.community_fetched_at,
-        updated_at = CURRENT_TIMESTAMP
+        npm_package_name, npm_version, npm_downloads, community_fetched_at,
+        npm_readme, ai_documentation_summary, ai_summary_generated_at
+      ) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)
     `);
-        stmt.run(node.nodeType, node.packageName, node.displayName, node.description, node.category, node.style, node.isAITool ? 1 : 0, node.isTrigger ? 1 : 0, node.isWebhook ? 1 : 0, node.isVersioned ? 1 : 0, node.isToolVariant ? 1 : 0, node.toolVariantOf || null, node.hasToolVariant ? 1 : 0, node.version, node.documentation || null, JSON.stringify(node.properties, null, 2), JSON.stringify(node.operations, null, 2), JSON.stringify(node.credentials, null, 2), node.outputs ? JSON.stringify(node.outputs, null, 2) : null, node.outputNames ? JSON.stringify(node.outputNames, null, 2) : null, node.isCommunity ? 1 : 0, node.isVerified ? 1 : 0, node.authorName || null, node.authorGithubUrl || null, node.npmPackageName || null, node.npmVersion || null, node.npmDownloads || 0, node.communityFetchedAt || null);
+        stmt.run(node.nodeType, node.packageName, node.displayName, node.description, node.category, node.style, node.isAITool ? 1 : 0, node.isTrigger ? 1 : 0, node.isWebhook ? 1 : 0, node.isVersioned ? 1 : 0, node.isToolVariant ? 1 : 0, node.toolVariantOf || null, node.hasToolVariant ? 1 : 0, node.version, node.documentation || null, JSON.stringify(node.properties, null, 2), JSON.stringify(node.operations, null, 2), JSON.stringify(node.credentials, null, 2), node.outputs ? JSON.stringify(node.outputs, null, 2) : null, node.outputNames ? JSON.stringify(node.outputNames, null, 2) : null, node.isCommunity ? 1 : 0, node.isVerified ? 1 : 0, node.authorName || null, node.authorGithubUrl || null, node.npmPackageName || null, node.npmVersion || null, node.npmDownloads || 0, node.communityFetchedAt || null, existing?.npm_readme || null, existing?.ai_documentation_summary || null, existing?.ai_summary_generated_at || null);
     }
     getNode(nodeType) {
         const normalizedType = node_type_normalizer_1.NodeTypeNormalizer.normalizeToFullForm(nodeType);

dist/scripts/rebuild.js

@@ -130,6 +130,9 @@ async function rebuild() {
         }
     }
     console.log(`💾 Save completed: ${saved} nodes saved successfully`);
+    console.log('\n🔍 Rebuilding FTS5 search index...');
+    db.prepare("INSERT INTO nodes_fts(nodes_fts) VALUES('rebuild')").run();
+    console.log('✅ FTS5 index rebuilt successfully');
     console.log('\n🔍 Running validation checks...');
     try {
         const validationResults = validateDatabase(repository);