fix: improve subtask & parent task management

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Ralph Khreish <35776126+Crunchyman-ralph@users.noreply.github.com>

.changeset/chore-fix-docs.md

@@ -0,0 +1,5 @@
+---
+"task-master-ai": patch
+---
+
+Improve `analyze-complexity` cli docs and `--research` flag documentation

.changeset/config.json

@@ -11,9 +11,6 @@
   "access": "public",
   "baseBranch": "main",
   "ignore": [
-    "docs",
+    "docs"
-    "@tm/cli",
-    "@tm/core",
-    "@tm/build-config"
   ]
 }

.changeset/curvy-weeks-flow.md

@@ -0,0 +1,5 @@
+---
+"task-master-ai": patch
+---
+
+Change parent task back to "pending" when all subtasks are in "pending" state

.changeset/mcp-timeout-configuration.md

@@ -0,0 +1,13 @@
+---
+"task-master-ai": minor
+---
+
+Enhanced Roo Code profile with MCP timeout configuration for improved reliability during long-running AI operations. The Roo profile now automatically configures a 300-second timeout for MCP server operations, preventing timeouts during complex tasks like `parse-prd`, `expand-all`, `analyze-complexity`, and `research` operations. This change also replaces static MCP configuration files with programmatic generation for better maintainability.
+
+**What's New:**
+- 300-second timeout for MCP operations (up from default 60 seconds)
+- Programmatic MCP configuration generation (replaces static asset files)
+- Enhanced reliability for AI-powered operations
+- Consistent with other AI coding assistant profiles
+
+**Migration:** No user action required - existing Roo Code installations will automatically receive the enhanced MCP configuration on next initialization.

.changeset/petite-ideas-grab.md

@@ -0,0 +1,5 @@
+---
+"task-master-ai": patch
+---
+
+Fix Claude Code settings validation for pathToClaudeCodeExecutable

.changeset/silly-pandas-find.md

@@ -0,0 +1,5 @@
+---
+"task-master-ai": patch
+---
+
+Fix sonar deep research model failing, should be called `sonar-deep-research`

.github/workflows/ci.yml

@@ -6,9 +6,6 @@ on:
       - main
       - next
   pull_request:
-    branches:
-      - main
-      - next
   workflow_dispatch:
 
 concurrency:

.manypkg.json

@@ -0,0 +1,6 @@
+{
+	"$schema": "https://unpkg.com/@manypkg/get-packages@1.1.3/schema.json",
+	"defaultBranch": "main",
+	"ignoredRules": ["ROOT_HAS_DEPENDENCIES", "INTERNAL_MISMATCH"],
+	"ignoredPackages": ["@tm/core", "@tm/cli", "@tm/build-config"]
+}

CHANGELOG.md

@@ -1,5 +1,34 @@
 # task-master-ai
 
+## 0.27.2
+
+### Patch Changes
+
+- [#1248](https://github.com/eyaltoledano/claude-task-master/pull/1248) [`044a7bf`](https://github.com/eyaltoledano/claude-task-master/commit/044a7bfc98049298177bc655cf341d7a8b6a0011) Thanks [@Crunchyman-ralph](https://github.com/Crunchyman-ralph)! - Fix set-status for subtasks:
+  - Parent tasks are now set as `done` when subtasks are all `done`
+  - Parent tasks are now set as `in-progress` when at least one subtask is `in-progress` or `done`
+
+## 0.27.1
+
+### Patch Changes
+
+- [#1232](https://github.com/eyaltoledano/claude-task-master/pull/1232) [`f487736`](https://github.com/eyaltoledano/claude-task-master/commit/f487736670ef8c484059f676293777eabb249c9e) Thanks [@Crunchyman-ralph](https://github.com/Crunchyman-ralph)! - Fix module not found for new 0.27.0 release
+
+- [#1233](https://github.com/eyaltoledano/claude-task-master/pull/1233) [`c911608`](https://github.com/eyaltoledano/claude-task-master/commit/c911608f60454253f4e024b57ca84e5a5a53f65c) Thanks [@Crunchyman-ralph](https://github.com/Crunchyman-ralph)! - Fix Zed MCP configuration by adding required "source" property
+  - Add "source": "custom" property to task-master-ai server in Zed settings.json
+
+## 0.27.1-rc.1
+
+### Patch Changes
+
+- [#1233](https://github.com/eyaltoledano/claude-task-master/pull/1233) [`1a18794`](https://github.com/eyaltoledano/claude-task-master/commit/1a1879483b86c118a4e46c02cbf4acebfcf6bcf9) Thanks [@Crunchyman-ralph](https://github.com/Crunchyman-ralph)! - One last testing final final
+
+## 0.27.1-rc.0
+
+### Patch Changes
+
+- [#1232](https://github.com/eyaltoledano/claude-task-master/pull/1232) [`f487736`](https://github.com/eyaltoledano/claude-task-master/commit/f487736670ef8c484059f676293777eabb249c9e) Thanks [@Crunchyman-ralph](https://github.com/Crunchyman-ralph)! - Fix module not found for new 0.27.0 release
+
 ## 0.27.0
 
 ### Minor Changes

README.md

@@ -60,6 +60,19 @@ The following documentation is also available in the `docs` directory:
 
 > **Note:** After clicking the link, you'll still need to add your API keys to the configuration. The link installs the MCP server with placeholder keys that you'll need to replace with your actual API keys.
 
+#### Claude Code Quick Install
+
+For Claude Code users:
+
+```bash
+claude mcp add taskmaster-ai -- npx -y task-master-ai
+```
+
+Don't forget to add your API keys to the configuration:
+- in the root .env of your Project
+- in the "env" section of your mcp config for taskmaster-ai
+
+
 ## Requirements
 
 Taskmaster utilizes AI across several commands, and those require a separate API key. You can use a variety of models from different AI providers provided you add your API keys. For example, if you want to use Claude 3.7, you'll need an Anthropic API key.
@@ -92,10 +105,11 @@ MCP (Model Control Protocol) lets you run Task Master directly from your editor.
 |              | Project | `<project_folder>/.cursor/mcp.json`   | `<project_folder>\.cursor\mcp.json`               | `mcpServers` |
 | **Windsurf** | Global  | `~/.codeium/windsurf/mcp_config.json` | `%USERPROFILE%\.codeium\windsurf\mcp_config.json` | `mcpServers` |
 | **VS Code**  | Project | `<project_folder>/.vscode/mcp.json`   | `<project_folder>\.vscode\mcp.json`               | `servers`    |
+| **Q CLI**    | Global  | `~/.aws/amazonq/mcp.json`             |                                                   | `mcpServers` |
 
 ##### Manual Configuration
 
-###### Cursor & Windsurf (`mcpServers`)
+###### Cursor & Windsurf & Q Developer CLI (`mcpServers`)
 
 ```json
 {

apps/cli/CHANGELOG.md

@@ -1,5 +1,12 @@
 # @tm/cli
 
+## null
+
+### Patch Changes
+
+- Updated dependencies []:
+  - @tm/core@null
+
 ## 0.27.0
 
 ### Patch Changes

apps/cli/package.json

@@ -1,6 +1,5 @@
 {
 	"name": "@tm/cli",
-	"version": "0.27.0",
 	"description": "Task Master CLI - Command line interface for task management",
 	"type": "module",
 	"private": true,
@@ -24,12 +23,12 @@
 	},
 	"dependencies": {
 		"@tm/core": "*",
-		"boxen": "^7.1.1",
+		"boxen": "^8.0.1",
 		"chalk": "5.6.2",
 		"cli-table3": "^0.6.5",
 		"commander": "^12.1.0",
-		"inquirer": "^9.2.10",
+		"inquirer": "^12.5.0",
-		"ora": "^8.1.0"
+		"ora": "^8.2.0"
 	},
 	"devDependencies": {
 		"@biomejs/biome": "^1.9.4",

apps/cli/src/index.ts

@@ -18,7 +18,8 @@ export * as ui from './utils/ui.js';
 export {
 	checkForUpdate,
 	performAutoUpdate,
-	displayUpgradeNotification
+	displayUpgradeNotification,
+	compareVersions
 } from './utils/auto-update.js';
 
 // Re-export commonly used types from tm-core

apps/cli/src/utils/auto-update.ts

@@ -7,7 +7,6 @@ import https from 'https';
 import chalk from 'chalk';
 import ora from 'ora';
 import boxen from 'boxen';
-import packageJson from '../../../../package.json' with { type: 'json' };
 
 export interface UpdateInfo {
 	currentVersion: string;
@@ -16,15 +15,18 @@ export interface UpdateInfo {
 }
 
 /**
- * Get current version from package.json
+ * Get current version from build-time injected environment variable
  */
 function getCurrentVersion(): string {
-	try {
+	// Version is injected at build time via TM_PUBLIC_VERSION
-		return packageJson.version;
+	const version = process.env.TM_PUBLIC_VERSION;
-	} catch (error) {
+	if (version && version !== 'unknown') {
-		console.warn('Could not read package.json for version info');
+		return version;
-		return '0.0.0';
 	}
+
+	// Fallback for development or if injection failed
+	console.warn('Could not read version from TM_PUBLIC_VERSION, using fallback');
+	return '0.0.0';
 }
 
 /**
@@ -33,7 +35,7 @@ function getCurrentVersion(): string {
  * @param v2 - Second version
  * @returns -1 if v1 < v2, 0 if v1 = v2, 1 if v1 > v2
  */
-function compareVersions(v1: string, v2: string): number {
+export function compareVersions(v1: string, v2: string): number {
 	const toParts = (v: string) => {
 		const [core, pre = ''] = v.split('-', 2);
 		const nums = core.split('.').map((n) => Number.parseInt(n, 10) || 0);

apps/docs/CHANGELOG.md

@@ -1,5 +1,7 @@
 # docs
 
+## 0.0.4
+
 ## 0.0.3
 
 ## 0.0.2

apps/docs/README.md

@@ -1,22 +1,24 @@
 # Task Master Documentation
 
-Welcome to the Task Master documentation. Use the links below to navigate to the information you need:
+Welcome to the Task Master documentation. This documentation site provides comprehensive guides for getting started with Task Master.
 
 ## Getting Started
 
-- [Configuration Guide](archive/configuration.md) - Set up environment variables and customize Task Master
+- [Quick Start Guide](/getting-started/quick-start) - Complete setup and first-time usage guide
-- [Tutorial](archive/ctutorial.md) - Step-by-step guide to getting started with Task Master
+- [Requirements](/getting-started/quick-start/requirements) - What you need to get started
+- [Installation](/getting-started/quick-start/installation) - How to install Task Master
 
-## Reference
+## Core Capabilities
 
-- [Command Reference](archive/ccommand-reference.md) - Complete list of all available commands
+- [MCP Tools](/capabilities/mcp) - Model Control Protocol integration
-- [Task Structure](archive/ctask-structure.md) - Understanding the task format and features
+- [CLI Commands](/capabilities/cli-root-commands) - Command line interface reference
+- [Task Structure](/capabilities/task-structure) - Understanding tasks and subtasks
 
-## Examples & Licensing
+## Best Practices
 
-- [Example Interactions](archive/cexamples.md) - Common Cursor AI interaction examples
+- [Advanced Configuration](/best-practices/configuration-advanced) - Detailed configuration options
-- [Licensing Information](archive/clicensing.md) - Detailed information about the license
+- [Advanced Tasks](/best-practices/advanced-tasks) - Working with complex task structures
 
 ## Need More Help?
 
-If you can't find what you're looking for in these docs, please check the [main README](../README.md) or visit our [GitHub repository](https://github.com/eyaltoledano/claude-task-master).
+If you can't find what you're looking for in these docs, please check the root README.md or visit our [GitHub repository](https://github.com/eyaltoledano/claude-task-master).

apps/docs/capabilities/cli-root-commands.mdx

@@ -156,7 +156,7 @@ sidebarTitle: "CLI Commands"
     # Use an alternative tasks file
     task-master analyze-complexity --file=custom-tasks.json
 
-    # Use Perplexity AI for research-backed complexity analysis
+    # Use your configured research model for research-backed complexity analysis
     task-master analyze-complexity --research
     ```
   </Accordion>

apps/docs/getting-started/quick-start/configuration-quick.mdx

@@ -108,5 +108,5 @@ You don’t need to configure everything up front. Most settings can be left as
 </Accordion>
 
 <Note>
-For advanced configuration options and detailed customization, see our [Advanced Configuration Guide](/docs/best-practices/configuration-advanced) page.
+For advanced configuration options and detailed customization, see our [Advanced Configuration Guide](/best-practices/configuration-advanced) page.
 </Note>

apps/docs/getting-started/quick-start/execute-quick.mdx

@@ -56,4 +56,4 @@ If you ran into problems and had to debug errors you can create new rules as you
 
 By now you have all you need to get started executing code faster and smarter with Task Master.
 
-If you have any questions please check out [Frequently Asked Questions](/docs/getting-started/faq)
+If you have any questions please check out [Frequently Asked Questions](/getting-started/faq)

apps/docs/getting-started/quick-start/installation.mdx

@@ -30,6 +30,19 @@ cursor://anysphere.cursor-deeplink/mcp/install?name=taskmaster-ai&config=eyJjb21
 ```
 
 > **Note:** After clicking the link, you'll still need to add your API keys to the configuration. The link installs the MCP server with placeholder keys that you'll need to replace with your actual API keys.
+
+### Claude Code Quick Install
+
+For Claude Code users:
+
+```bash
+claude mcp add taskmaster-ai -- npx -y task-master-ai
+```
+
+Don't forget to add your API keys to the configuration:
+- in the root .env of your Project
+- in the "env" section of your mcp config for taskmaster-ai
+
 </Accordion>
 ## Installation Options
 

apps/docs/getting-started/quick-start/quick-start.mdx

@@ -6,13 +6,13 @@ sidebarTitle: "Quick Start"
 This guide is for new users who want to start using Task Master with minimal setup time.
 
 It covers:
-- [Requirements](/docs/getting-started/quick-start/requirements): You will need Node.js and an AI model API Key.
+- [Requirements](/getting-started/quick-start/requirements): You will need Node.js and an AI model API Key.
-- [Installation](/docs/getting-started/quick-start/installation): How to Install Task Master.
+- [Installation](/getting-started/quick-start/installation): How to Install Task Master.
-- [Configuration](/docs/getting-started/quick-start/configuration-quick): Setting up your API Key, MCP, and more.
+- [Configuration](/getting-started/quick-start/configuration-quick): Setting up your API Key, MCP, and more.
-- [PRD](/docs/getting-started/quick-start/prd-quick): Writing and parsing your first PRD.
+- [PRD](/getting-started/quick-start/prd-quick): Writing and parsing your first PRD.
-- [Task Setup](/docs/getting-started/quick-start/tasks-quick): Preparing your tasks for execution.
+- [Task Setup](/getting-started/quick-start/tasks-quick): Preparing your tasks for execution.
-- [Executing Tasks](/docs/getting-started/quick-start/execute-quick): Using Task Master to execute tasks.
+- [Executing Tasks](/getting-started/quick-start/execute-quick): Using Task Master to execute tasks.
-- [Rules & Context](/docs/getting-started/quick-start/rules-quick): Learn how and why to build context in your project over time.
+- [Rules & Context](/getting-started/quick-start/rules-quick): Learn how and why to build context in your project over time.
 
 <Tip>
 By the end of this guide, you'll have everything you need to begin working productively with Task Master.

apps/docs/getting-started/quick-start/tasks-quick.mdx

@@ -61,9 +61,25 @@ Task Master can provide a complexity report which can be helpful to read before
 Can you analyze the complexity of our tasks to help me understand which ones need to be broken down further?
 ```
 
+The agent will use the `analyze_project_complexity` MCP tool, or you can run it directly with the CLI command:
+```bash
+task-master analyze-complexity
+```
+
+For more comprehensive analysis using your configured research model, you can use:
+```bash
+task-master analyze-complexity --research
+```
+
+<Tip>
+The `--research` flag uses whatever research model you have configured in `.taskmaster/config.json` (configurable via `task-master models --setup`) for research-backed complexity analysis, providing more informed recommendations.
+</Tip>
+
 You can view the report in a friendly table using:
 ```
 Can you show me the complexity report in a more readable format?
 ```
 
-<Check>Now you are ready to begin [executing tasks](/docs/getting-started/quick-start/execute-quick)</Check>
+For more detailed CLI options, see the [Analyze Task Complexity](/capabilities/cli-root-commands#analyze-task-complexity) section.
+
+<Check>Now you are ready to begin [executing tasks](/getting-started/quick-start/execute-quick)</Check>

apps/docs/introduction.mdx

@@ -4,7 +4,7 @@ Welcome to v1 of the Task Master Docs. Expect weekly updates as we expand and re
 
 We've organized the docs into three sections depending on your experience level and goals:
 
-### Getting Started - Jump in to [Quick Start](/docs/getting-started/quick-start)
+### Getting Started - Jump in to [Quick Start](/getting-started/quick-start)
 Designed for first-time users. Get set up, create your first PRD, and run your first task.
 
 ### Best Practices

apps/docs/package.json

@@ -1,6 +1,6 @@
 {
 	"name": "docs",
-	"version": "0.0.3",
+	"version": "0.0.4",
 	"private": true,
 	"description": "Task Master documentation powered by Mintlify",
 	"scripts": {

apps/extension/CHANGELOG.md

@@ -1,5 +1,33 @@
 # Change Log
 
+## 0.25.3
+
+### Patch Changes
+
+- Updated dependencies [[`044a7bf`](https://github.com/eyaltoledano/claude-task-master/commit/044a7bfc98049298177bc655cf341d7a8b6a0011)]:
+  - task-master-ai@0.27.2
+
+## 0.25.2
+
+### Patch Changes
+
+- Updated dependencies [[`f487736`](https://github.com/eyaltoledano/claude-task-master/commit/f487736670ef8c484059f676293777eabb249c9e), [`c911608`](https://github.com/eyaltoledano/claude-task-master/commit/c911608f60454253f4e024b57ca84e5a5a53f65c), [`1a18794`](https://github.com/eyaltoledano/claude-task-master/commit/1a1879483b86c118a4e46c02cbf4acebfcf6bcf9)]:
+  - task-master-ai@0.27.1
+
+## 0.25.2-rc.1
+
+### Patch Changes
+
+- Updated dependencies [[`1a18794`](https://github.com/eyaltoledano/claude-task-master/commit/1a1879483b86c118a4e46c02cbf4acebfcf6bcf9)]:
+  - task-master-ai@0.27.1-rc.1
+
+## 0.25.2-rc.0
+
+### Patch Changes
+
+- Updated dependencies [[`f487736`](https://github.com/eyaltoledano/claude-task-master/commit/f487736670ef8c484059f676293777eabb249c9e)]:
+  - task-master-ai@0.27.1-rc.0
+
 ## 0.25.0
 
 ### Minor Changes

apps/extension/package.json

@@ -3,7 +3,7 @@
 	"private": true,
 	"displayName": "TaskMaster",
 	"description": "A visual Kanban board interface for TaskMaster projects in VS Code",
-	"version": "0.25.0",
+	"version": "0.25.3",
 	"publisher": "Hamster",
 	"icon": "assets/icon.png",
 	"engines": {
@@ -240,7 +240,7 @@
 		"check-types": "tsc --noEmit"
 	},
 	"dependencies": {
-		"task-master-ai": "*"
+		"task-master-ai": "0.27.2"
 	},
 	"devDependencies": {
 		"@dnd-kit/core": "^6.3.1",
@@ -254,8 +254,9 @@
 		"@radix-ui/react-separator": "^1.1.7",
 		"@radix-ui/react-slot": "^1.2.3",
 		"@tailwindcss/postcss": "^4.1.11",
+		"@tanstack/react-query": "^5.83.0",
 		"@types/mocha": "^10.0.10",
-		"@types/node": "20.x",
+		"@types/node": "^22.10.5",
 		"@types/react": "19.1.8",
 		"@types/react-dom": "19.1.6",
 		"@types/vscode": "^1.101.0",
@@ -271,12 +272,11 @@
 		"lucide-react": "^0.525.0",
 		"npm-run-all": "^4.1.5",
 		"postcss": "8.5.6",
+		"react": "^19.0.0",
+		"react-dom": "^19.0.0",
 		"tailwind-merge": "^3.3.1",
 		"tailwindcss": "4.1.11",
-		"typescript": "^5.8.3",
+		"typescript": "^5.7.3"
-		"@tanstack/react-query": "^5.83.0",
-		"react": "^19.0.0",
-		"react-dom": "^19.0.0"
 	},
 	"overrides": {
 		"glob@<8": "^10.4.5",