Refactors parse-prd MCP tool to properly handle project root and path resolution, fixing the 'Input file not found: /scripts/prd.txt' error.
Key changes include: Made projectRoot a required parameter, prioritized args.projectRoot over session-derived paths, added validation to prevent parsing in invalid directories (/, home dir), improved error handling with detailed messages, and added creation of output directory if needed.
This resolves issues similar to those fixed in initialize-project, where the tool was incorrectly resolving paths when session context was incomplete.
Refactors the initialize_project MCP tool to call a dedicated direct function (initializeProjectDirect) instead of executing the CLI command. This improves reliability and aligns it with other MCP tools.
Key changes include: Modified initialize-project.js to call initializeProjectDirect, required projectRoot parameter, implemented handleApiResult for MCP response formatting, enhanced direct function to prioritize args.projectRoot over session-derived paths, added validation to prevent initialization in invalid directories, forces yes:true for non-interactive use, ensures process.chdir() targets validated directory, and added isSilentMode() checks to suppress console output during MCP operations.
This resolves issues where the tool previously failed due to incorrect fallback directory resolution when session context was incomplete.
