fix(mcp): make projectRoot optional in all MCP tools

- Update all tool definitions to use z.string().optional() for projectRoot
- Fix direct function implementations to use findTasksJsonPath(args, log) pattern
- Enables consistent project root detection without requiring explicit params
- Update changeset to document these improvements

This change ensures MCP tools work properly with the smart project root
detection system, removing the need for explicit projectRoot parameters in
client applications. Improves usability and reduces integration friction.

mcp-server/src/core/direct-functions/fix-dependencies.js

@@ -18,8 +18,8 @@ export async function fixDependenciesDirect(args, log) {
   try {
     log.info(`Fixing invalid dependencies in tasks...`);
     
-    // Determine the tasks file path
-    const tasksPath = args.file || await findTasksJsonPath(args.projectRoot);
+    // Find the tasks.json path
+    const tasksPath = findTasksJsonPath(args, log);
     
     // Verify the file exists
     if (!fs.existsSync(tasksPath)) {