feat: Enhanced project initialization with Git worktree detection (#743)

* Fix Cursor deeplink installation with copy-paste instructions (#723)

* detect git worktree

* add changeset

* add aliases and git flags

* add changeset

* rename and update test

* add store tasks in git functionality

* update changeset

* fix newline

* remove unused import

* update command wording

* update command option text

scripts/modules/commands.js

@@ -3342,6 +3342,11 @@ ${result.result}
 		.option('--skip-install', 'Skip installing dependencies')
 		.option('--dry-run', 'Show what would be done without making changes')
 		.option('--aliases', 'Add shell aliases (tm, taskmaster)')
+		.option('--no-aliases', 'Skip shell aliases (tm, taskmaster)')
+		.option('--git', 'Initialize Git repository')
+		.option('--no-git', 'Skip Git repository initialization')
+		.option('--git-tasks', 'Store tasks in Git')
+		.option('--no-git-tasks', 'No Git storage of tasks')
 		.action(async (cmdOptions) => {
 			// cmdOptions contains parsed arguments
 			// Parse rules: accept space or comma separated, default to all available rules

scripts/modules/utils/git-utils.js

@@ -349,6 +349,25 @@ function getCurrentBranchSync(projectRoot) {
 	}
 }
 
+/**
+ * Check if the current working directory is inside a Git work-tree.
+ * Uses `git rev-parse --is-inside-work-tree` which is more specific than --git-dir
+ * for detecting work-trees (excludes bare repos and .git directories).
+ * This is ideal for preventing accidental git init in existing work-trees.
+ * @returns {boolean} True if inside a Git work-tree, false otherwise.
+ */
+function insideGitWorkTree() {
+	try {
+		execSync('git rev-parse --is-inside-work-tree', {
+			stdio: 'ignore',
+			cwd: process.cwd()
+		});
+		return true;
+	} catch {
+		return false;
+	}
+}
+
 // Export all functions
 export {
 	isGitRepository,
@@ -366,5 +385,6 @@ export {
 	checkAndAutoSwitchGitTag,
 	checkAndAutoSwitchGitTagSync,
 	isGitRepositorySync,
-	getCurrentBranchSync
+	getCurrentBranchSync,
+	insideGitWorkTree
 };