diff --git a/scripts/init.js b/scripts/init.js
index 933f2714..b5673a4f 100755
--- a/scripts/init.js
+++ b/scripts/init.js
@@ -477,26 +477,9 @@ function createProjectStructure(addAliases, dryRun) {
 
 	// Create directories
 	ensureDirectoryExists(path.join(targetDir, '.cursor', 'rules'));
-
-	// Create Roo directories
-	ensureDirectoryExists(path.join(targetDir, '.roo'));
-	ensureDirectoryExists(path.join(targetDir, '.roo', 'rules'));
-	for (const mode of [
-		'architect',
-		'ask',
-		'boomerang',
-		'code',
-		'debug',
-		'test'
-	]) {
-		ensureDirectoryExists(path.join(targetDir, '.roo', `rules-${mode}`));
-	}
-
 	ensureDirectoryExists(path.join(targetDir, 'scripts'));
 	ensureDirectoryExists(path.join(targetDir, 'tasks'));
 
-	// Removed root-level MCP configuration; handled by brand-specific logic only.
-
 	// Copy template files with replacements
 	const replacements = {
 		year: new Date().getFullYear()
@@ -545,32 +528,6 @@ function createProjectStructure(addAliases, dryRun) {
 		path.join(targetDir, '.cursor', 'rules', 'self_improve.mdc')
 	);
 
-	const rooSourceDir = path.join(__dirname, '..', 'assets', 'roocode');
-	const rooModesDir = path.join(rooSourceDir, '.roo');
-	const rooModes = ['architect', 'ask', 'boomerang', 'code', 'debug', 'test'];
-
-// Copy .roomodes to project root
-const roomodesSrc = path.join(rooSourceDir, '.roomodes');
-const roomodesDest = path.join(targetDir, '.roomodes');
-if (fs.existsSync(roomodesSrc)) {
-	fs.copyFileSync(roomodesSrc, roomodesDest);
-	log('info', `Copied .roomodes to ${roomodesDest}`);
-} else {
-	log('warn', `.roomodes not found at ${roomodesSrc}`);
-}
-
-// Copy each <mode>-rules file into the corresponding .roo/rules-<mode>/ folder
-for (const mode of rooModes) {
-	const src = path.join(rooModesDir, `rules-${mode}`, `${mode}-rules`);
-	const dest = path.join(targetDir, '.roo', `rules-${mode}`, `${mode}-rules`);
-	if (fs.existsSync(src)) {
-		fs.copyFileSync(src, dest);
-		log('info', `Copied ${src} to ${dest}`);
-	} else {
-		log('warn', `Roo rule file not found for mode '${mode}': ${src}`);
-	}
-}
-
 	// Copy example_prd.txt
 	copyTemplateFile(
 		'example_prd.txt',
diff --git a/scripts/modules/rule-transformer.js b/scripts/modules/rule-transformer.js
index 89cbe51d..554e7cc9 100644
--- a/scripts/modules/rule-transformer.js
+++ b/scripts/modules/rule-transformer.js
@@ -12,13 +12,11 @@ import { log } from './utils.js';
 // Import the shared MCP configuration helper
 import { setupMCPConfiguration } from './mcp-utils.js';
 
-// Import Roo Code conversionConfig and fileMap from profiles
-import { conversionConfig, fileMap } from '../profiles/roo.js';
 
 /**
  * Replace basic Cursor terms with brand equivalents
  */
-function replaceBasicTerms(content) {
+function replaceBasicTerms(content, conversionConfig) {
 	let result = content;
 
 	// Apply brand term replacements
@@ -41,7 +39,7 @@ function replaceBasicTerms(content) {
 /**
  * Replace Cursor tool references with brand tool equivalents
  */
-function replaceToolReferences(content) {
+function replaceToolReferences(content, conversionConfig) {
 	let result = content;
 
 	// Basic pattern for direct tool name replacements
@@ -72,7 +70,7 @@ function replaceToolReferences(content) {
 /**
  * Update documentation URLs to point to brand documentation
  */
-function updateDocReferences(content) {
+function updateDocReferences(content, conversionConfig) {
 	let result = content;
 
 	// Apply documentation URL replacements
@@ -90,7 +88,7 @@ function updateDocReferences(content) {
 /**
  * Update file references in markdown links
  */
-function updateFileReferences(content) {
+function updateFileReferences(content, conversionConfig) {
 	const { pathPattern, replacement } = conversionConfig.fileReferences;
 	return content.replace(pathPattern, replacement);
 }
@@ -218,6 +216,12 @@ function convertAllCursorRulesToBrandRules(projectDir, profile) {
 		'info',
 		`Rule conversion complete: ${success} successful, ${failed} failed`
 	);
+
+	// Call post-processing hook if defined (e.g., for Roo's rules-*mode* folders)
+	if (typeof profile.onPostConvertBrandRules === 'function') {
+		profile.onPostConvertBrandRules(projectDir);
+	}
+
 	return { success, failed };
 }
 /**
diff --git a/scripts/profiles/roo.js b/scripts/profiles/roo.js
index af97fa81..a6d72af5 100644
--- a/scripts/profiles/roo.js
+++ b/scripts/profiles/roo.js
@@ -125,8 +125,46 @@ const conversionConfig = {
 export function onAddBrandRules(targetDir) {
 	const sourceDir = path.resolve(__dirname, '../../assets/roocode');
 	copyRecursiveSync(sourceDir, targetDir);
+
+	// Enhanced error checking and logging for .roomodes and rules-*mode* files
+	const rooModesDir = path.join(sourceDir, '.roo');
+	const rooModes = ['architect', 'ask', 'boomerang', 'code', 'debug', 'test'];
+
+	// Copy .roomodes to project root
+	const roomodesSrc = path.join(sourceDir, '.roomodes');
+	const roomodesDest = path.join(targetDir, '.roomodes');
+	if (fs.existsSync(roomodesSrc)) {
+		try {
+			fs.copyFileSync(roomodesSrc, roomodesDest);
+			console.log(`[Roo] Copied .roomodes to ${roomodesDest}`);
+		} catch (err) {
+			console.warn(`[Roo] Failed to copy .roomodes: ${err.message}`);
+		}
+	} else {
+		console.warn(`[Roo] .roomodes not found at ${roomodesSrc}`);
+	}
+
+	// Copy each <mode>-rules file into the corresponding .roo/rules-<mode>/ folder
+	for (const mode of rooModes) {
+		const src = path.join(rooModesDir, `rules-${mode}`, `${mode}-rules`);
+		const dest = path.join(targetDir, '.roo', `rules-${mode}`, `${mode}-rules`);
+		if (fs.existsSync(src)) {
+			try {
+				// Ensure destination directory exists
+				const destDir = path.dirname(dest);
+				if (!fs.existsSync(destDir)) fs.mkdirSync(destDir, { recursive: true });
+				fs.copyFileSync(src, dest);
+				console.log(`[Roo] Copied ${src} to ${dest}`);
+			} catch (err) {
+				console.warn(`[Roo] Failed to copy ${src} to ${dest}: ${err.message}`);
+			}
+		} else {
+			console.warn(`[Roo] Roo rule file not found for mode '${mode}': ${src}`);
+		}
+	}
 }
 
+
 function copyRecursiveSync(src, dest) {
 	const exists = fs.existsSync(src);
 	const stats = exists && fs.statSync(src);
@@ -180,4 +218,10 @@ function isDirectoryEmpty(dirPath) {
 	return fs.readdirSync(dirPath).length === 0;
 }
 
-export { conversionConfig, fileMap, globalReplacements, brandName, rulesDir };
+function onPostConvertBrandRules(targetDir) {
+	onAddBrandRules(targetDir);
+}
+
+export { conversionConfig, fileMap, globalReplacements, brandName, rulesDir, onPostConvertBrandRules };
+
+