Fixes readme files and makes sure that when you mark a parent task done that its sub tasks are also marked done

.cursor/rules/dev_workflow.mdc

@@ -1,6 +1,6 @@
 ---
 description: guide the Cursor Agent in using the meta-development script (scripts/dev.js). It also defines the overall workflow for reading, updating, and generating tasks during AI-driven development.
-globs: scripts/dev.js, tasks.json, tasks/*.txt
+globs: **/*
 alwaysApply: true
 ---
 rules:

README-task-master.md

@@ -280,6 +280,8 @@ npm run generate
 npm run dev -- set-status --id=<id> --status=<status>
 ```
 
+When marking a task as "done", all of its subtasks will automatically be marked as "done" as well.
+
 ### Expand Tasks
 ```bash
 npm run dev -- expand --id=<id> --subtasks=<number> --prompt="<context>"

package.json

@@ -47,7 +47,7 @@
     "scripts/dev.js",
     "assets/**",
     ".cursor/**",
-    "README.md",
+    "README-task-master.md",
     "index.js"
   ]
 }

scripts/README.md

@@ -97,6 +97,30 @@ Notes:
 - Only tasks that aren't marked as 'done' will be updated
 - Tasks with ID >= the specified --from value will be updated
 
+## Setting Task Status
+
+The `set-status` command allows you to change a task's status:
+
+```bash
+# Mark a task as done
+node scripts/dev.js set-status --id=3 --status=done
+
+# Mark a task as pending
+node scripts/dev.js set-status --id=4 --status=pending
+
+# Mark a specific subtask as done
+node scripts/dev.js set-status --id=3.1 --status=done
+
+# Mark multiple tasks at once
+node scripts/dev.js set-status --id=1,2,3 --status=done
+```
+
+Notes:
+- When marking a parent task as "done", all of its subtasks will automatically be marked as "done" as well
+- Common status values are 'done', 'pending', and 'deferred', but any string is accepted
+- You can specify multiple task IDs by separating them with commas
+- Subtask IDs are specified using the format `parentId.subtaskId` (e.g., `3.1`)
+
 ## Expanding Tasks
 
 The `expand` command allows you to break down tasks into subtasks for more detailed implementation:

scripts/dev.js

@@ -662,6 +662,17 @@ function setTaskStatus(tasksPath, taskIdInput, newStatus) {
   const oldStatus = task.status || 'pending';
   task.status = newStatus;
   
+  // Automatically update subtasks if the parent task is being marked as done
+  if (newStatus === 'done' && task.subtasks && Array.isArray(task.subtasks) && task.subtasks.length > 0) {
+    log('info', `Task ${taskId} has ${task.subtasks.length} subtasks that will be marked as done too.`);
+    
+    task.subtasks.forEach(subtask => {
+      const oldSubtaskStatus = subtask.status || 'pending';
+      subtask.status = newStatus;
+      log('info', `  └─ Updated subtask ${taskId}.${subtask.id} status from '${oldSubtaskStatus}' to '${newStatus}'`);
+    });
+  }
+  
   // Save the changes
   writeJSON(tasksPath, data);
   log('info', `Updated task ${taskId} status from '${oldStatus}' to '${newStatus}'`);

scripts/init.js

@@ -92,8 +92,8 @@ function copyTemplateFile(templateName, targetPath, replacements = {}) {
     case 'self_improve.mdc':
       sourcePath = path.join(__dirname, '..', '.cursor', 'rules', 'self_improve.mdc');
       break;
-    case 'README.md':
+    case 'README-task-master.md':
-      sourcePath = path.join(__dirname, '..', 'README.md');
+      sourcePath = path.join(__dirname, '..', 'README-task-master.md');
       break;
     default:
       // For other files like env.example, gitignore, etc. that don't have direct equivalents
@@ -212,7 +212,8 @@ function createProjectStructure(projectName, projectDescription, projectVersion,
       "@anthropic-ai/sdk": "^0.39.0",
       "chalk": "^4.1.2",
       "commander": "^11.1.0",
-      "dotenv": "^16.3.1"
+      "dotenv": "^16.3.1",
+      "openai": "^4.86.1"
     }
   };
   
@@ -256,7 +257,7 @@ function createProjectStructure(projectName, projectDescription, projectVersion,
   copyTemplateFile('example_prd.txt', path.join(targetDir, 'scripts', 'example_prd.txt'));
   
   // Create main README.md
-  copyTemplateFile('README.md', path.join(targetDir, 'README.md'), replacements);
+  copyTemplateFile('README-task-master.md', path.join(targetDir, 'README.md'), replacements);
   
   // Initialize git repository if git is available
   try {

scripts/prepare-package.js

@@ -120,7 +120,7 @@ function preparePackage() {
   // Check for required files
   const requiredFiles = [
     'package.json',
-    'README.md',
+    'README-task-master.md',
     'index.js',
     'scripts/init.js',
     'scripts/dev.js',

templates/README-task-master.md

@@ -7,6 +7,27 @@ A task management system for AI-driven development with Claude, designed to work
 - Node.js 14.0.0 or higher
 - Anthropic API key (Claude API)
 - Anthropic SDK version 0.39.0 or higher
+- OpenAI SDK (for Perplexity API integration, optional)
+
+## Configuration
+
+The script can be configured through environment variables in a `.env` file at the root of the project:
+
+### Required Configuration
+- `ANTHROPIC_API_KEY`: Your Anthropic API key for Claude
+
+### Optional Configuration
+- `MODEL`: Specify which Claude model to use (default: "claude-3-7-sonnet-20250219")
+- `MAX_TOKENS`: Maximum tokens for model responses (default: 4000)
+- `TEMPERATURE`: Temperature for model responses (default: 0.7)
+- `PERPLEXITY_API_KEY`: Your Perplexity API key for research-backed subtask generation
+- `PERPLEXITY_MODEL`: Specify which Perplexity model to use (default: "sonar-medium-online")
+- `DEBUG`: Enable debug logging (default: false)
+- `LOG_LEVEL`: Log level - debug, info, warn, error (default: info)
+- `DEFAULT_SUBTASKS`: Default number of subtasks when expanding (default: 3)
+- `DEFAULT_PRIORITY`: Default priority for generated tasks (default: medium)
+- `PROJECT_NAME`: Override default project name in tasks.json
+- `PROJECT_VERSION`: Override default version in tasks.json
 
 ## Installation
 
@@ -105,6 +126,7 @@ What tasks are available to work on next?
 
 The agent will:
 - Run `node scripts/dev.js list` to see all tasks
+- Run `node scripts/dev.js list --with-subtasks` to see tasks with their subtasks
 - Analyze dependencies to determine which tasks are ready to be worked on
 - Prioritize tasks based on priority level and ID order
 - Suggest the next task(s) to implement
@@ -194,6 +216,26 @@ The agent will execute:
 node scripts/dev.js expand --all
 ```
 
+For research-backed subtask generation using Perplexity AI:
+```
+Please break down task 5 using research-backed generation.
+```
+
+The agent will execute:
+```bash
+node scripts/dev.js expand --id=5 --research
+```
+
+You can also apply research-backed generation to all tasks:
+```
+Please break down all pending tasks using research-backed generation.
+```
+
+The agent will execute:
+```bash
+node scripts/dev.js expand --all --research
+```
+
 ## Manual Command Reference
 
 While the Cursor agent will handle most commands for you, you can also run them manually:
@@ -208,6 +250,21 @@ npm run parse-prd -- --input=<prd-file.txt>
 npm run list
 ```
 
+# List tasks with a specific status
+```bash
+npm run dev -- list --status=<status>
+```
+
+# List tasks with subtasks
+```bash
+npm run dev -- list --with-subtasks
+```
+
+# List tasks with a specific status and include subtasks
+```bash
+npm run dev -- list --status=<status> --with-subtasks
+```
+
 ### Update Tasks
 ```bash
 npm run dev -- update --from=<id> --prompt="<prompt>"
@@ -223,6 +280,8 @@ npm run generate
 npm run dev -- set-status --id=<id> --status=<status>
 ```
 
+When marking a task as "done", all of its subtasks will automatically be marked as "done" as well.
+
 ### Expand Tasks
 ```bash
 npm run dev -- expand --id=<id> --subtasks=<number> --prompt="<context>"
@@ -232,6 +291,15 @@ or
 npm run dev -- expand --all
 ```
 
+For research-backed subtask generation:
+```bash
+npm run dev -- expand --id=<id> --research
+```
+or
+```bash
+npm run dev -- expand --all --research
+```
+
 ## Task Structure
 
 Tasks in tasks.json have the following structure:

templates/cursor_rules.mdc

@@ -0,0 +1,53 @@
+---
+description: Guidelines for creating and maintaining Cursor rules to ensure consistency and effectiveness.
+globs: .cursor/rules/*.mdc
+alwaysApply: true
+---
+
+- **Required Rule Structure:**
+  ```markdown
+  ---
+  description: Clear, one-line description of what the rule enforces
+  globs: path/to/files/*.ext, other/path/**/*
+  alwaysApply: boolean
+  ---
+
+  - **Main Points in Bold**
+    - Sub-points with details
+    - Examples and explanations
+  ```
+
+- **File References:**
+  - Use `[filename](mdc:path/to/file)` ([filename](mdc:filename)) to reference files
+  - Example: [prisma.mdc](mdc:.cursor/rules/prisma.mdc) for rule references
+  - Example: [schema.prisma](mdc:prisma/schema.prisma) for code references
+
+- **Code Examples:**
+  - Use language-specific code blocks
+  ```typescript
+  // ✅ DO: Show good examples
+  const goodExample = true;
+  
+  // ❌ DON'T: Show anti-patterns
+  const badExample = false;
+  ```
+
+- **Rule Content Guidelines:**
+  - Start with high-level overview
+  - Include specific, actionable requirements
+  - Show examples of correct implementation
+  - Reference existing code when possible
+  - Keep rules DRY by referencing other rules
+
+- **Rule Maintenance:**
+  - Update rules when new patterns emerge
+  - Add examples from actual codebase
+  - Remove outdated patterns
+  - Cross-reference related rules
+
+- **Best Practices:**
+  - Use bullet points for clarity
+  - Keep descriptions concise
+  - Include both DO and DON'T examples
+  - Reference actual code over theoretical examples
+  - Use consistent formatting across rules 

templates/scripts_README.md

@@ -56,6 +56,30 @@ The script can be configured through environment variables in a `.env` file at t
 
    Run `node scripts/dev.js` without arguments to see detailed usage information.
 
+## Setting Task Status
+
+The `set-status` command allows you to change a task's status:
+
+```bash
+# Mark a task as done
+node scripts/dev.js set-status --id=3 --status=done
+
+# Mark a task as pending
+node scripts/dev.js set-status --id=4 --status=pending
+
+# Mark a specific subtask as done
+node scripts/dev.js set-status --id=3.1 --status=done
+
+# Mark multiple tasks at once
+node scripts/dev.js set-status --id=1,2,3 --status=done
+```
+
+Notes:
+- When marking a parent task as "done", all of its subtasks will automatically be marked as "done" as well
+- Common status values are 'done', 'pending', and 'deferred', but any string is accepted
+- You can specify multiple task IDs by separating them with commas
+- Subtask IDs are specified using the format `parentId.subtaskId` (e.g., `3.1`)
+
 ## Expanding Tasks
 
 The `expand` command allows you to break down tasks into subtasks for more detailed implementation:

templates/self_improve.mdc

@@ -0,0 +1,73 @@
+---
+description: Guidelines for continuously improving Cursor rules based on emerging code patterns and best practices.
+globs: **/*
+alwaysApply: true
+---
+
+- **Rule Improvement Triggers:**
+  - New code patterns not covered by existing rules
+  - Repeated similar implementations across files
+  - Common error patterns that could be prevented
+  - New libraries or tools being used consistently
+  - Emerging best practices in the codebase
+
+- **Analysis Process:**
+  - Compare new code with existing rules
+  - Identify patterns that should be standardized
+  - Look for references to external documentation
+  - Check for consistent error handling patterns
+  - Monitor test patterns and coverage
+
+- **Rule Updates:**
+  - **Add New Rules When:**
+    - A new technology/pattern is used in 3+ files
+    - Common bugs could be prevented by a rule
+    - Code reviews repeatedly mention the same feedback
+    - New security or performance patterns emerge
+
+  - **Modify Existing Rules When:**
+    - Better examples exist in the codebase
+    - Additional edge cases are discovered
+    - Related rules have been updated
+    - Implementation details have changed
+
+- **Example Pattern Recognition:**
+  ```typescript
+  // If you see repeated patterns like:
+  const data = await prisma.user.findMany({
+    select: { id: true, email: true },
+    where: { status: 'ACTIVE' }
+  });
+  
+  // Consider adding to [prisma.mdc](mdc:.cursor/rules/prisma.mdc):
+  // - Standard select fields
+  // - Common where conditions
+  // - Performance optimization patterns
+  ```
+
+- **Rule Quality Checks:**
+  - Rules should be actionable and specific
+  - Examples should come from actual code
+  - References should be up to date
+  - Patterns should be consistently enforced
+
+- **Continuous Improvement:**
+  - Monitor code review comments
+  - Track common development questions
+  - Update rules after major refactors
+  - Add links to relevant documentation
+  - Cross-reference related rules
+
+- **Rule Deprecation:**
+  - Mark outdated patterns as deprecated
+  - Remove rules that no longer apply
+  - Update references to deprecated rules
+  - Document migration paths for old patterns
+
+- **Documentation Updates:**
+  - Keep examples synchronized with code
+  - Update references to external docs
+  - Maintain links between related rules
+  - Document breaking changes
+
+Follow [cursor_rules.mdc](mdc:.cursor/rules/cursor_rules.mdc) for proper rule formatting and structure.