diff --git a/.changeset/two-bats-smoke.md b/.changeset/two-bats-smoke.md
index 171be06c..d5b5513c 100644
--- a/.changeset/two-bats-smoke.md
+++ b/.changeset/two-bats-smoke.md
@@ -14,4 +14,5 @@
 - Implement add-subtask MCP command for adding subtasks to existing tasks
 - Implement remove-subtask MCP command for removing subtasks from parent tasks
 - Implement analyze-complexity MCP command for analyzing task complexity and generating recommendations
+- Implement clear-subtasks MCP command for clearing subtasks from parent tasks
 - Document MCP server naming conventions in architecture.mdc and mcp.mdc files (file names use kebab-case, direct functions use camelCase with Direct suffix, tool registration functions use camelCase with Tool suffix, and MCP tool names use snake_case)
diff --git a/mcp-server/src/core/direct-functions/clear-subtasks.js b/mcp-server/src/core/direct-functions/clear-subtasks.js
new file mode 100644
index 00000000..1d2f249a
--- /dev/null
+++ b/mcp-server/src/core/direct-functions/clear-subtasks.js
@@ -0,0 +1,102 @@
+/**
+ * Direct function wrapper for clearSubtasks
+ */
+
+import { clearSubtasks } from '../../../../scripts/modules/task-manager.js';
+import { findTasksJsonPath } from '../utils/path-utils.js';
+import fs from 'fs';
+
+/**
+ * Clear subtasks from specified tasks
+ * @param {Object} args - Function arguments
+ * @param {string} [args.id] - Task IDs (comma-separated) to clear subtasks from
+ * @param {boolean} [args.all] - Clear subtasks from all tasks
+ * @param {string} [args.file] - Path to the tasks file
+ * @param {string} [args.projectRoot] - Project root directory
+ * @param {Object} log - Logger object
+ * @returns {Promise<{success: boolean, data?: Object, error?: {code: string, message: string}}>}
+ */
+export async function clearSubtasksDirect(args, log) {
+  try {
+    log.info(`Clearing subtasks with args: ${JSON.stringify(args)}`);
+    
+    // Either id or all must be provided
+    if (!args.id && !args.all) {
+      return {
+        success: false,
+        error: {
+          code: 'INPUT_VALIDATION_ERROR',
+          message: 'Either task IDs with id parameter or all parameter must be provided'
+        }
+      };
+    }
+
+    // Find the tasks.json path
+    const tasksPath = findTasksJsonPath(args.file, args.projectRoot);
+    
+    // Check if tasks.json exists
+    if (!fs.existsSync(tasksPath)) {
+      return {
+        success: false,
+        error: {
+          code: 'FILE_NOT_FOUND_ERROR',
+          message: `Tasks file not found at ${tasksPath}`
+        }
+      };
+    }
+    
+    let taskIds;
+    
+    // If all is specified, get all task IDs
+    if (args.all) {
+      log.info('Clearing subtasks from all tasks');
+      const data = JSON.parse(fs.readFileSync(tasksPath, 'utf8'));
+      if (!data || !data.tasks || data.tasks.length === 0) {
+        return {
+          success: false,
+          error: {
+            code: 'INPUT_VALIDATION_ERROR',
+            message: 'No valid tasks found in the tasks file'
+          }
+        };
+      }
+      taskIds = data.tasks.map(t => t.id).join(',');
+    } else {
+      // Use the provided task IDs
+      taskIds = args.id;
+    }
+    
+    log.info(`Clearing subtasks from tasks: ${taskIds}`);
+    
+    // Call the core function
+    clearSubtasks(tasksPath, taskIds);
+    
+    // Read the updated data to provide a summary
+    const updatedData = JSON.parse(fs.readFileSync(tasksPath, 'utf8'));
+    const taskIdArray = taskIds.split(',').map(id => parseInt(id.trim(), 10));
+    
+    // Build a summary of what was done
+    const clearedTasksCount = taskIdArray.length;
+    const taskSummary = taskIdArray.map(id => {
+      const task = updatedData.tasks.find(t => t.id === id);
+      return task ? { id, title: task.title } : { id, title: 'Task not found' };
+    });
+    
+    return {
+      success: true,
+      data: {
+        message: `Successfully cleared subtasks from ${clearedTasksCount} task(s)`,
+        tasksCleared: taskSummary
+      }
+    };
+  } catch (error) {
+    log.error(`Error in clearSubtasksDirect: ${error.message}`);
+    return {
+      success: false,
+      error: {
+        code: 'CORE_FUNCTION_ERROR',
+        message: error.message
+      }
+    };
+  }
+} 
\ No newline at end of file
diff --git a/mcp-server/src/core/task-master-core.js b/mcp-server/src/core/task-master-core.js
index d524943a..5dc55869 100644
--- a/mcp-server/src/core/task-master-core.js
+++ b/mcp-server/src/core/task-master-core.js
@@ -20,6 +20,7 @@ import { addTaskDirect } from './direct-functions/add-task.js';
 import { addSubtaskDirect } from './direct-functions/add-subtask.js';
 import { removeSubtaskDirect } from './direct-functions/remove-subtask.js';
 import { analyzeTaskComplexityDirect } from './direct-functions/analyze-task-complexity.js';
+import { clearSubtasksDirect } from './direct-functions/clear-subtasks.js';
 
 // Re-export utility functions
 export { findTasksJsonPath } from './utils/path-utils.js';
@@ -40,7 +41,8 @@ export const directFunctions = new Map([
   ['addTaskDirect', addTaskDirect],
   ['addSubtaskDirect', addSubtaskDirect],
   ['removeSubtaskDirect', removeSubtaskDirect],
-  ['analyzeTaskComplexityDirect', analyzeTaskComplexityDirect]
+  ['analyzeTaskComplexityDirect', analyzeTaskComplexityDirect],
+  ['clearSubtasksDirect', clearSubtasksDirect]
 ]);
 
 // Re-export all direct function implementations
@@ -59,5 +61,6 @@ export {
   addTaskDirect,
   addSubtaskDirect,
   removeSubtaskDirect,
-  analyzeTaskComplexityDirect
+  analyzeTaskComplexityDirect,
+  clearSubtasksDirect
 }; 
\ No newline at end of file
diff --git a/mcp-server/src/tools/clear-subtasks.js b/mcp-server/src/tools/clear-subtasks.js
new file mode 100644
index 00000000..60f52c2b
--- /dev/null
+++ b/mcp-server/src/tools/clear-subtasks.js
@@ -0,0 +1,52 @@
+/**
+ * tools/clear-subtasks.js
+ * Tool for clearing subtasks from parent tasks
+ */
+
+import { z } from "zod";
+import {
+  handleApiResult,
+  createErrorResponse
+} from "./utils.js";
+import { clearSubtasksDirect } from "../core/task-master-core.js";
+
+/**
+ * Register the clearSubtasks tool with the MCP server
+ * @param {Object} server - FastMCP server instance
+ */
+export function registerClearSubtasksTool(server) {
+  server.addTool({
+    name: "clear_subtasks",
+    description: "Clear subtasks from specified tasks",
+    parameters: z.object({
+      id: z.string().optional().describe("Task IDs (comma-separated) to clear subtasks from"),
+      all: z.boolean().optional().describe("Clear subtasks from all tasks"),
+      file: z.string().optional().describe("Path to the tasks file (default: tasks/tasks.json)"),
+      projectRoot: z.string().optional().describe("Root directory of the project (default: current working directory)")
+    }).refine(data => data.id || data.all, {
+      message: "Either 'id' or 'all' parameter must be provided",
+      path: ["id", "all"]
+    }),
+    execute: async (args, { log }) => {
+      try {
+        log.info(`Clearing subtasks with args: ${JSON.stringify(args)}`);
+        
+        // Call the direct function wrapper
+        const result = await clearSubtasksDirect(args, log);
+        
+        // Log result
+        if (result.success) {
+          log.info(`Subtasks cleared successfully: ${result.data.message}`);
+        } else {
+          log.error(`Failed to clear subtasks: ${result.error.message}`);
+        }
+        
+        // Use handleApiResult to format the response
+        return handleApiResult(result, log, 'Error clearing subtasks');
+      } catch (error) {
+        log.error(`Error in clearSubtasks tool: ${error.message}`);
+        return createErrorResponse(error.message);
+      }
+    },
+  });
+} 
\ No newline at end of file
diff --git a/mcp-server/src/tools/index.js b/mcp-server/src/tools/index.js
index fe719457..dc582ca1 100644
--- a/mcp-server/src/tools/index.js
+++ b/mcp-server/src/tools/index.js
@@ -18,6 +18,7 @@ import { registerAddTaskTool } from "./add-task.js";
 import { registerAddSubtaskTool } from "./add-subtask.js";
 import { registerRemoveSubtaskTool } from "./remove-subtask.js";
 import { registerAnalyzeTool } from "./analyze.js";
+import { registerClearSubtasksTool } from "./clear-subtasks.js";
 
 /**
  * Register all Task Master tools with the MCP server
@@ -38,6 +39,7 @@ export function registerTaskMasterTools(server) {
   registerAddSubtaskTool(server);
   registerRemoveSubtaskTool(server);
   registerAnalyzeTool(server);
+  registerClearSubtasksTool(server);
   
   logger.info("Registered all Task Master tools with MCP server");
 }
diff --git a/tasks/task_023.txt b/tasks/task_023.txt
index db9c4d7c..61446690 100644
--- a/tasks/task_023.txt
+++ b/tasks/task_023.txt
@@ -736,7 +736,7 @@ Following MCP implementation standards:
    - Unit test for analyzeTaskComplexityDirect.js
    - Integration test for MCP tool
 
-## 29. Implement clear-subtasks MCP command [pending]
+## 29. Implement clear-subtasks MCP command [done]
 ### Dependencies: None
 ### Description: Create direct function wrapper and MCP tool for clearing subtasks from a parent task.
 ### Details:
diff --git a/tasks/tasks.json b/tasks/tasks.json
index f6014f8e..6a24247c 100644
--- a/tasks/tasks.json
+++ b/tasks/tasks.json
@@ -1609,7 +1609,7 @@
           "title": "Implement clear-subtasks MCP command",
           "description": "Create direct function wrapper and MCP tool for clearing subtasks from a parent task.",
           "details": "Following MCP implementation standards:\n\n1. Create clearSubtasksDirect.js in mcp-server/src/core/direct-functions/:\n   - Import clearSubtasks from task-manager.js\n   - Handle file paths using findTasksJsonPath utility\n   - Process arguments: taskId\n   - Validate inputs and handle errors with try/catch\n   - Return standardized { success, data/error } object\n\n2. Export from task-master-core.js:\n   - Import the function from its file\n   - Add to directFunctions map\n\n3. Create clear-subtasks.js MCP tool in mcp-server/src/tools/:\n   - Import z from zod for parameter schema\n   - Import executeMCPToolAction from ./utils.js\n   - Import clearSubtasksDirect from task-master-core.js\n   - Define parameters matching CLI options using zod schema\n   - Implement registerClearSubtasksTool(server) with server.addTool\n   - Use executeMCPToolAction in execute method\n\n4. Register in tools/index.js with tool name 'clear_subtasks'\n\n5. Add to .cursor/mcp.json with appropriate schema\n\n6. Write tests following testing guidelines:\n   - Unit test for clearSubtasksDirect.js\n   - Integration test for MCP tool",
-          "status": "pending",
+          "status": "done",
           "dependencies": [],
           "parentTaskId": 23
         },