diff --git a/mcp-server/src/core/direct-functions/rules.js b/mcp-server/src/core/direct-functions/rules.js
index 222c195d..93c0cd20 100644
--- a/mcp-server/src/core/direct-functions/rules.js
+++ b/mcp-server/src/core/direct-functions/rules.js
@@ -13,7 +13,7 @@ import {
 	BRAND_NAMES,
 	isValidBrand,
 	getBrandProfile
-} from '../../../../scripts/modules/rule-transformer.js';
+} from '../../../../src/utils/rule-transformer.js';
 import path from 'path';
 import fs from 'fs';
 
diff --git a/scripts/init.js b/scripts/init.js
index 84b01c14..1cd0b1ec 100755
--- a/scripts/init.js
+++ b/scripts/init.js
@@ -24,7 +24,7 @@ import figlet from 'figlet';
 import boxen from 'boxen';
 import gradient from 'gradient-string';
 import { isSilentMode } from './modules/utils.js';
-import { convertAllRulesToBrandRules } from './modules/rule-transformer.js';
+import { convertAllRulesToBrandRules } from '../src/utils/rule-transformer.js';
 import { runInteractiveRulesSetup } from '../src/utils/rules-setup.js';
 import { execSync } from 'child_process';
 
@@ -748,7 +748,7 @@ function createProjectStructure(
 // Import MCP configuration helper
 import { setupMCPConfiguration } from '../src/utils/mcp-utils.js';
 // Import centralized brand profile logic
-import { BRAND_PROFILES, BRAND_NAMES } from './modules/rule-transformer.js';
+import { BRAND_PROFILES, BRAND_NAMES } from '../src/utils/rule-transformer.js';
 
 // Dynamically generate availableBrandRules from BRAND_NAMES and brand profiles
 const availableBrandRules = BRAND_NAMES.map((name) => {
diff --git a/scripts/modules/commands.js b/scripts/modules/commands.js
index a2f13b60..caecaacb 100644
--- a/scripts/modules/commands.js
+++ b/scripts/modules/commands.js
@@ -85,7 +85,7 @@ import {
 	BRAND_NAMES,
 	isValidBrand,
 	getBrandProfile
-} from './rule-transformer.js';
+} from '../../src/utils/rule-transformer.js';
 import { runInteractiveRulesSetup } from '../../src/utils/rules-setup.js';
 
 /**
diff --git a/scripts/modules/rule-transformer.js b/src/utils/rule-transformer.js
similarity index 98%
rename from scripts/modules/rule-transformer.js
rename to src/utils/rule-transformer.js
index 4e28f6d5..496aa91f 100644
--- a/scripts/modules/rule-transformer.js
+++ b/src/utils/rule-transformer.js
@@ -7,13 +7,13 @@
  */
 import fs from 'fs';
 import path from 'path';
-import { log } from './utils.js';
+import { log } from '../../scripts/modules/utils.js';
 
 // Import the shared MCP configuration helper
-import { setupMCPConfiguration } from '../../src/utils/mcp-utils.js';
+import { setupMCPConfiguration } from './mcp-utils.js';
 
 // --- Centralized Brand Helpers ---
-import { clineProfile, cursorProfile, rooProfile, windsurfProfile } from '../profiles/index.js';
+import { clineProfile, cursorProfile, rooProfile, windsurfProfile } from '../../scripts/profiles/index.js';
 
 export const BRAND_PROFILES = {
 	cline: clineProfile,
@@ -335,4 +335,4 @@ export {
 	convertAllRulesToBrandRules,
 	convertRuleToBrandRule,
 	removeBrandRules
-};
+}; 
\ No newline at end of file
diff --git a/src/utils/rules-setup.js b/src/utils/rules-setup.js
index 220f7e80..f338c9b6 100644
--- a/src/utils/rules-setup.js
+++ b/src/utils/rules-setup.js
@@ -1,7 +1,7 @@
 import readline from 'readline';
 import inquirer from 'inquirer';
 import chalk from 'chalk';
-import { BRAND_PROFILES, BRAND_NAMES } from '../../scripts/modules/rule-transformer.js';
+import { BRAND_PROFILES, BRAND_NAMES } from './rule-transformer.js';
 
 // Dynamically generate availableBrandRules from BRAND_NAMES and brand profiles
 const availableBrandRules = BRAND_NAMES.map((name) => {
diff --git a/tests/unit/rule-transformer-cursor.test.js b/tests/unit/rule-transformer-cursor.test.js
index 37c7c472..3c77ef1c 100644
--- a/tests/unit/rule-transformer-cursor.test.js
+++ b/tests/unit/rule-transformer-cursor.test.js
@@ -5,7 +5,7 @@ import { dirname } from 'path';
 import {
 	convertRuleToBrandRule,
 	convertAllRulesToBrandRules
-} from '../../scripts/modules/rule-transformer.js';
+} from '../../src/utils/rule-transformer.js';
 import * as cursorProfile from '../../scripts/profiles/cursor.js';
 
 const __filename = fileURLToPath(import.meta.url);
diff --git a/tests/unit/rule-transformer-roo.test.js b/tests/unit/rule-transformer-roo.test.js
index 9591451a..6abe0467 100644
--- a/tests/unit/rule-transformer-roo.test.js
+++ b/tests/unit/rule-transformer-roo.test.js
@@ -5,7 +5,7 @@ import { dirname } from 'path';
 import {
 	convertRuleToBrandRule,
 	convertAllRulesToBrandRules
-} from '../../scripts/modules/rule-transformer.js';
+} from '../../src/utils/rule-transformer.js';
 import * as rooProfile from '../../scripts/profiles/roo.js';
 
 const __filename = fileURLToPath(import.meta.url);
diff --git a/tests/unit/rule-transformer-windsurf.test.js b/tests/unit/rule-transformer-windsurf.test.js
index 644ebed1..7382cdcd 100644
--- a/tests/unit/rule-transformer-windsurf.test.js
+++ b/tests/unit/rule-transformer-windsurf.test.js
@@ -2,7 +2,7 @@ import fs from 'fs';
 import path from 'path';
 import { fileURLToPath } from 'url';
 import { dirname } from 'path';
-import { convertRuleToBrandRule } from '../../scripts/modules/rule-transformer.js';
+import { convertRuleToBrandRule } from '../../src/utils/rule-transformer.js';
 import * as windsurfProfile from '../../scripts/profiles/windsurf.js';
 
 const __filename = fileURLToPath(import.meta.url);