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- Update query keys to include all relevant parameters (branches, agents) - Fix use-branches to pass includeRemote parameter to query key - Fix use-settings to include sources in agents query key - Update running-agents-view to use correct query key structure - Update use-spec-loading to properly use spec query hooks - Add missing queryClient invalidation in auto-mode mutations - Add missing cache invalidation in spec mutations after creation Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>