feat: update resumeFeature API to support optional useWorktrees parameter

- Modified the resumeFeature method across multiple files to accept an optional useWorktrees parameter, defaulting to false for improved control over worktree usage.
- Updated related hooks and service methods to ensure consistent handling of the new parameter.
- Enhanced server route logic to reflect the change, ensuring worktrees are only utilized when explicitly enabled.

apps/server/src/services/auto-mode-service.ts

@@ -193,7 +193,7 @@ export class AutoModeService {
   async executeFeature(
     projectPath: string,
     featureId: string,
-    useWorktrees = true,
+    useWorktrees = false,
     isAutoMode = false,
     providedWorktreePath?: string
   ): Promise<void> {
@@ -352,7 +352,7 @@ export class AutoModeService {
   async resumeFeature(
     projectPath: string,
     featureId: string,
-    useWorktrees = true
+    useWorktrees = false
   ): Promise<void> {
     // Check if context exists in .automaker directory
     const featureDir = getFeatureDir(projectPath, featureId);