Merge branch 'v0.13.0rc' into feat/react-query

Merged latest changes from v0.13.0rc into feat/react-query while preserving
React Query migration. Key merge decisions:

- Kept React Query hooks for data fetching (useRunningAgents, useStopFeature, etc.)
- Added backlog plan handling to running-agents-view stop functionality
- Imported both SkeletonPulse and Spinner for CLI status components
- Used Spinner for refresh buttons across all settings sections
- Preserved isBacklogPlan check in agent-output-modal TaskProgressPanel
- Added handleOpenInIntegratedTerminal to worktree actions while keeping React Query mutations

apps/ui/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@automaker/ui",
-  "version": "0.11.0",
+  "version": "0.12.0",
   "description": "An autonomous AI development studio that helps you build software faster using AI-powered agents",
   "homepage": "https://github.com/AutoMaker-Org/automaker",
   "repository": {
@@ -40,6 +40,7 @@
   },
   "dependencies": {
     "@automaker/dependency-resolver": "1.0.0",
+    "@automaker/spec-parser": "1.0.0",
     "@automaker/types": "1.0.0",
     "@codemirror/lang-xml": "6.1.0",
     "@codemirror/language": "^6.12.1",
@@ -48,6 +49,22 @@
     "@dnd-kit/core": "6.3.1",
     "@dnd-kit/sortable": "10.0.0",
     "@dnd-kit/utilities": "3.2.2",
+    "@fontsource/cascadia-code": "^5.2.3",
+    "@fontsource/fira-code": "^5.2.7",
+    "@fontsource/ibm-plex-mono": "^5.2.7",
+    "@fontsource/inconsolata": "^5.2.8",
+    "@fontsource/inter": "^5.2.8",
+    "@fontsource/iosevka": "^5.2.5",
+    "@fontsource/jetbrains-mono": "^5.2.8",
+    "@fontsource/lato": "^5.2.7",
+    "@fontsource/montserrat": "^5.2.8",
+    "@fontsource/open-sans": "^5.2.7",
+    "@fontsource/poppins": "^5.2.7",
+    "@fontsource/raleway": "^5.2.8",
+    "@fontsource/roboto": "^5.2.9",
+    "@fontsource/source-code-pro": "^5.2.7",
+    "@fontsource/source-sans-3": "^5.2.9",
+    "@fontsource/work-sans": "^5.2.8",
     "@lezer/highlight": "1.2.3",
     "@radix-ui/react-checkbox": "1.3.3",
     "@radix-ui/react-collapsible": "1.1.12",
@@ -205,12 +222,34 @@
           "arch": [
             "x64"
           ]
+        },
+        {
+          "target": "rpm",
+          "arch": [
+            "x64"
+          ]
         }
       ],
       "category": "Development",
       "icon": "public/logo_larger.png",
       "maintainer": "webdevcody@gmail.com",
-      "executableName": "automaker"
+      "executableName": "automaker",
+      "description": "An autonomous AI development studio that helps you build software faster using AI-powered agents",
+      "synopsis": "AI-powered autonomous development studio"
+    },
+    "rpm": {
+      "depends": [
+        "gtk3",
+        "libnotify",
+        "nss",
+        "libXScrnSaver",
+        "libXtst",
+        "xdg-utils",
+        "at-spi2-core",
+        "libuuid"
+      ],
+      "compression": "xz",
+      "vendor": "AutoMaker Team"
     },
     "nsis": {
       "oneClick": false,