refactor: remove MCP permission settings and streamline SDK options for autonomous mode

- Removed MCP permission settings from the application, including related functions and UI components.
- Updated SDK options to always bypass permissions and allow unrestricted tool access in autonomous mode.
- Adjusted related components and services to reflect the removal of MCP permission configurations, ensuring a cleaner and more efficient codebase.

apps/ui/src/hooks/use-settings-migration.ts

@@ -230,8 +230,6 @@ export async function syncSettingsToServer(): Promise<boolean> {
       keyboardShortcuts: state.keyboardShortcuts,
       aiProfiles: state.aiProfiles,
       mcpServers: state.mcpServers,
-      mcpAutoApproveTools: state.mcpAutoApproveTools,
-      mcpUnrestrictedTools: state.mcpUnrestrictedTools,
       promptCustomization: state.promptCustomization,
       projects: state.projects,
       trashedProjects: state.trashedProjects,
@@ -336,12 +334,10 @@ export async function loadMCPServersFromServer(): Promise<boolean> {
     }
 
     const mcpServers = result.settings.mcpServers || [];
-    const mcpAutoApproveTools = result.settings.mcpAutoApproveTools ?? true;
-    const mcpUnrestrictedTools = result.settings.mcpUnrestrictedTools ?? true;
 
     // Clear existing and add all from server
     // We need to update the store directly since we can't use hooks here
-    useAppStore.setState({ mcpServers, mcpAutoApproveTools, mcpUnrestrictedTools });
+    useAppStore.setState({ mcpServers });
 
     console.log(`[Settings Load] Loaded ${mcpServers.length} MCP servers from server`);
     return true;