refactor(06-03): migrate Batch 5 secondary routes and wire router index

- features/routes/list.ts: Add facadeFactory parameter, use facade.detectOrphanedFeatures
- projects/routes/overview.ts: Add facadeFactory parameter, use facade.getRunningAgents/getStatusForProject
- features/index.ts: Pass facadeFactory to list handler
- projects/index.ts: Pass facadeFactory to overview handler
- auto-mode/index.ts: Accept facadeFactory parameter and wire to all route handlers
- All routes maintain backward compatibility with autoModeService fallback

apps/server/src/routes/projects/index.ts

@@ -5,6 +5,7 @@
 import { Router } from 'express';
 import type { FeatureLoader } from '../../services/feature-loader.js';
 import type { AutoModeService } from '../../services/auto-mode-service.js';
+import type { AutoModeServiceFacade } from '../../services/auto-mode/index.js';
 import type { SettingsService } from '../../services/settings-service.js';
 import type { NotificationService } from '../../services/notification-service.js';
 import { createOverviewHandler } from './routes/overview.js';
@@ -13,14 +14,21 @@ export function createProjectsRoutes(
   featureLoader: FeatureLoader,
   autoModeService: AutoModeService,
   settingsService: SettingsService,
-  notificationService: NotificationService
+  notificationService: NotificationService,
+  facadeFactory?: (projectPath: string) => AutoModeServiceFacade
 ): Router {
   const router = Router();
 
   // GET /overview - Get aggregate status for all projects
   router.get(
     '/overview',
-    createOverviewHandler(featureLoader, autoModeService, settingsService, notificationService)
+    createOverviewHandler(
+      featureLoader,
+      autoModeService,
+      settingsService,
+      notificationService,
+      facadeFactory
+    )
   );
 
   return router;

apps/server/src/routes/projects/routes/overview.ts

@@ -10,6 +10,11 @@
 import type { Request, Response } from 'express';
 import type { FeatureLoader } from '../../../services/feature-loader.js';
 import type { AutoModeService } from '../../../services/auto-mode-service.js';
+import type {
+  AutoModeServiceFacade,
+  RunningAgentInfo,
+  ProjectAutoModeStatus,
+} from '../../../services/auto-mode/index.js';
 import type { SettingsService } from '../../../services/settings-service.js';
 import type { NotificationService } from '../../../services/notification-service.js';
 import type {
@@ -149,7 +154,8 @@ export function createOverviewHandler(
   featureLoader: FeatureLoader,
   autoModeService: AutoModeService,
   settingsService: SettingsService,
-  notificationService: NotificationService
+  notificationService: NotificationService,
+  facadeFactory?: (projectPath: string) => AutoModeServiceFacade
 ) {
   return async (_req: Request, res: Response): Promise<void> => {
     try {
@@ -158,7 +164,15 @@ export function createOverviewHandler(
       const projectRefs: ProjectRef[] = settings.projects || [];
 
       // Get all running agents once to count live running features per project
-      const allRunningAgents = await autoModeService.getRunningAgents();
+      // Use facade if available, otherwise fall back to autoModeService
+      let allRunningAgents: RunningAgentInfo[];
+      if (facadeFactory && projectRefs.length > 0) {
+        // For running agents, we can use any project's facade since it's a global query
+        const facade = facadeFactory(projectRefs[0].path);
+        allRunningAgents = await facade.getRunningAgents();
+      } else {
+        allRunningAgents = await autoModeService.getRunningAgents();
+      }
 
       // Collect project statuses in parallel
       const projectStatusPromises = projectRefs.map(async (projectRef): Promise<ProjectStatus> => {
@@ -169,7 +183,13 @@ export function createOverviewHandler(
           const totalFeatures = features.length;
 
           // Get auto-mode status for this project (main worktree, branchName = null)
-          const autoModeStatus = autoModeService.getStatusForProject(projectRef.path, null);
+          let autoModeStatus: ProjectAutoModeStatus;
+          if (facadeFactory) {
+            const facade = facadeFactory(projectRef.path);
+            autoModeStatus = facade.getStatusForProject(null);
+          } else {
+            autoModeStatus = autoModeService.getStatusForProject(projectRef.path, null);
+          }
           const isAutoModeRunning = autoModeStatus.isAutoLoopRunning;
 
           // Count live running features for this project (across all branches)