feat: refactor development and production launch scripts

- Introduced `dev.mjs` for development mode with hot reloading using Vite.
- Added `start.mjs` for production mode, serving pre-built static files without hot reloading.
- Created a new utility module `launcher-utils.mjs` for shared functions across scripts.
- Updated package.json scripts to reflect new launch commands.
- Removed deprecated `init.mjs` and associated MCP permission settings from the codebase.
- Added `.dockerignore` and updated `.gitignore` for better environment management.
- Enhanced README with updated usage instructions for starting the application.

apps/ui/src/store/app-store.ts

@@ -498,8 +498,6 @@ export interface AppState {
 
   // MCP Servers
   mcpServers: MCPServerConfig[]; // List of configured MCP servers for agent use
-  mcpAutoApproveTools: boolean; // Auto-approve MCP tool calls without permission prompts
-  mcpUnrestrictedTools: boolean; // Allow unrestricted tools when MCP servers are enabled
 
   // Prompt Customization
   promptCustomization: PromptCustomization; // Custom prompts for Auto Mode, Agent, Backlog Plan, Enhancement
@@ -784,8 +782,6 @@ export interface AppActions {
   setAutoLoadClaudeMd: (enabled: boolean) => Promise<void>;
   setEnableSandboxMode: (enabled: boolean) => Promise<void>;
   setSkipSandboxWarning: (skip: boolean) => Promise<void>;
-  setMcpAutoApproveTools: (enabled: boolean) => Promise<void>;
-  setMcpUnrestrictedTools: (enabled: boolean) => Promise<void>;
 
   // Prompt Customization actions
   setPromptCustomization: (customization: PromptCustomization) => Promise<void>;
@@ -987,8 +983,6 @@ const initialState: AppState = {
   enableSandboxMode: false, // Default to disabled (can be enabled for additional security)
   skipSandboxWarning: false, // Default to disabled (show sandbox warning dialog)
   mcpServers: [], // No MCP servers configured by default
-  mcpAutoApproveTools: true, // Default to enabled - bypass permission prompts for MCP tools
-  mcpUnrestrictedTools: true, // Default to enabled - don't filter allowedTools when MCP enabled
   promptCustomization: {}, // Empty by default - all prompts use built-in defaults
   aiProfiles: DEFAULT_AI_PROFILES,
   projectAnalysis: null,
@@ -1639,19 +1633,6 @@ export const useAppStore = create<AppState & AppActions>()(
         const { syncSettingsToServer } = await import('@/hooks/use-settings-migration');
         await syncSettingsToServer();
       },
-      setMcpAutoApproveTools: async (enabled) => {
-        set({ mcpAutoApproveTools: enabled });
-        // Sync to server settings file
-        const { syncSettingsToServer } = await import('@/hooks/use-settings-migration');
-        await syncSettingsToServer();
-      },
-      setMcpUnrestrictedTools: async (enabled) => {
-        set({ mcpUnrestrictedTools: enabled });
-        // Sync to server settings file
-        const { syncSettingsToServer } = await import('@/hooks/use-settings-migration');
-        await syncSettingsToServer();
-      },
-
       // Prompt Customization actions
       setPromptCustomization: async (customization) => {
         set({ promptCustomization: customization });
@@ -2940,8 +2921,6 @@ export const useAppStore = create<AppState & AppActions>()(
           skipSandboxWarning: state.skipSandboxWarning,
           // MCP settings
           mcpServers: state.mcpServers,
-          mcpAutoApproveTools: state.mcpAutoApproveTools,
-          mcpUnrestrictedTools: state.mcpUnrestrictedTools,
           // Prompt customization
           promptCustomization: state.promptCustomization,
           // Profiles and sessions