Fix concurrency limits and remote branch fetching issues (#788)

* Changes from fix/bug-fixes

* feat: Refactor worktree iteration and improve error logging across services

* feat: Extract URL/port patterns to module level and fix abort condition

* fix: Improve IPv6 loopback handling, select component layout, and terminal UI

* feat: Add thinking level defaults and adjust list row padding

* Update apps/ui/src/store/app-store.ts

Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>

* feat: Add worktree-aware terminal creation and split options, fix npm security issues from audit

* feat: Add tracked remote detection to pull dialog flow

* feat: Add merge state tracking to git operations

* feat: Improve merge detection and add post-merge action preferences

* Update apps/ui/src/components/views/board-view/dialogs/git-pull-dialog.tsx

Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>

* Update apps/ui/src/components/views/board-view/dialogs/git-pull-dialog.tsx

Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>

* fix: Pass merge detection info to stash reapplication and handle merge state consistently

* fix: Call onPulled callback in merge handlers and add validation checks

---------

Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>

apps/ui/src/hooks/use-settings-migration.ts

@@ -166,6 +166,7 @@ export function parseLocalStorageSettings(): Partial<GlobalSettings> | null {
       defaultSkipTests: state.defaultSkipTests as boolean,
       enableDependencyBlocking: state.enableDependencyBlocking as boolean,
       skipVerificationInAutoMode: state.skipVerificationInAutoMode as boolean,
+      mergePostAction: (state.mergePostAction as 'commit' | 'manual' | null) ?? null,
       useWorktrees: state.useWorktrees as boolean,
       defaultPlanningMode: state.defaultPlanningMode as GlobalSettings['defaultPlanningMode'],
       defaultRequirePlanApproval: state.defaultRequirePlanApproval as boolean,
@@ -704,6 +705,7 @@ export function hydrateStoreFromSettings(settings: GlobalSettings): void {
     defaultSkipTests: settings.defaultSkipTests ?? true,
     enableDependencyBlocking: settings.enableDependencyBlocking ?? true,
     skipVerificationInAutoMode: settings.skipVerificationInAutoMode ?? false,
+    mergePostAction: settings.mergePostAction ?? null,
     useWorktrees: settings.useWorktrees ?? true,
     defaultPlanningMode: settings.defaultPlanningMode ?? 'skip',
     defaultRequirePlanApproval: settings.defaultRequirePlanApproval ?? false,
@@ -718,6 +720,8 @@ export function hydrateStoreFromSettings(settings: GlobalSettings): void {
     enhancementModel: settings.enhancementModel ?? 'claude-sonnet',
     validationModel: settings.validationModel ?? 'claude-opus',
     phaseModels: settings.phaseModels ?? current.phaseModels,
+    defaultThinkingLevel: settings.defaultThinkingLevel ?? 'none',
+    defaultReasoningEffort: settings.defaultReasoningEffort ?? 'none',
     enabledCursorModels: allCursorModels, // Always use ALL cursor models
     cursorDefaultModel: sanitizedCursorDefaultModel,
     enabledOpencodeModels: sanitizedEnabledOpencodeModels,
@@ -749,6 +753,7 @@ export function hydrateStoreFromSettings(settings: GlobalSettings): void {
     projectHistory: settings.projectHistory ?? [],
     projectHistoryIndex: settings.projectHistoryIndex ?? -1,
     lastSelectedSessionByProject: settings.lastSelectedSessionByProject ?? {},
+    currentWorktreeByProject: settings.currentWorktreeByProject ?? {},
     // UI State
     worktreePanelCollapsed: settings.worktreePanelCollapsed ?? false,
     lastProjectDir: settings.lastProjectDir ?? '',
@@ -802,6 +807,7 @@ function buildSettingsUpdateFromStore(): Record<string, unknown> {
     defaultSkipTests: state.defaultSkipTests,
     enableDependencyBlocking: state.enableDependencyBlocking,
     skipVerificationInAutoMode: state.skipVerificationInAutoMode,
+    mergePostAction: state.mergePostAction,
     useWorktrees: state.useWorktrees,
     defaultPlanningMode: state.defaultPlanningMode,
     defaultRequirePlanApproval: state.defaultRequirePlanApproval,
@@ -812,6 +818,8 @@ function buildSettingsUpdateFromStore(): Record<string, unknown> {
     enhancementModel: state.enhancementModel,
     validationModel: state.validationModel,
     phaseModels: state.phaseModels,
+    defaultThinkingLevel: state.defaultThinkingLevel,
+    defaultReasoningEffort: state.defaultReasoningEffort,
     enabledDynamicModelIds: state.enabledDynamicModelIds,
     disabledProviders: state.disabledProviders,
     autoLoadClaudeMd: state.autoLoadClaudeMd,
@@ -836,6 +844,7 @@ function buildSettingsUpdateFromStore(): Record<string, unknown> {
     projectHistory: state.projectHistory,
     projectHistoryIndex: state.projectHistoryIndex,
     lastSelectedSessionByProject: state.lastSelectedSessionByProject,
+    currentWorktreeByProject: state.currentWorktreeByProject,
     worktreePanelCollapsed: state.worktreePanelCollapsed,
     lastProjectDir: state.lastProjectDir,
     recentFolders: state.recentFolders,